Wall clock time and date at job start Tue Mar 31 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38292 * 119.94266 * 2 1 4 4 C 1.38122 * 120.05886 * 179.97438 * 3 2 1 5 5 C 1.38752 * 119.94029 * 0.02562 * 4 3 2 6 6 O 1.35903 * 120.05696 * 180.02562 * 5 4 3 7 7 C 1.42906 * 116.99515 * 0.02562 * 6 5 4 8 8 C 1.53006 * 109.46748 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46626 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46957 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99692 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00142 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99867 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.46922 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00371 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99795 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00253 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99916 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46797 * 90.00240 * 18 16 14 20 20 H 1.48500 * 109.47411 * 210.00445 * 18 16 14 21 21 H 1.48501 * 109.47147 * 330.00830 * 18 16 14 22 22 C 1.38716 * 119.89270 * 0.28427 * 5 4 3 23 23 C 1.50694 * 120.03095 * 179.72390 * 22 5 4 24 24 C 1.38162 * 119.93935 * 359.44148 * 22 5 4 25 25 H 1.09007 * 109.47139 * 90.00258 * 1 2 3 26 26 H 1.09001 * 109.46968 * 209.99583 * 1 2 3 27 27 H 1.08992 * 109.47750 * 330.00088 * 1 2 3 28 28 H 1.08002 * 119.97380 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.03247 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47490 * 59.99635 * 7 6 5 31 31 H 1.09001 * 109.47232 * 299.98989 * 7 6 5 32 32 H 1.08993 * 109.46955 * 299.99993 * 8 7 6 33 33 H 1.09000 * 109.47050 * 59.99822 * 8 7 6 34 34 H 1.08993 * 109.47839 * 299.99931 * 9 8 7 35 35 H 1.09000 * 109.47160 * 60.00369 * 9 8 7 36 36 H 0.96999 * 120.00047 * 359.97438 * 12 10 9 37 37 H 1.09004 * 109.47074 * 299.99559 * 13 12 10 38 38 H 1.09004 * 109.47714 * 59.99650 * 13 12 10 39 39 H 0.97002 * 120.00081 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.47540 * 89.99533 * 23 22 5 41 41 H 1.09002 * 109.47089 * 209.99801 * 23 22 5 42 42 H 1.09003 * 109.46931 * 329.99610 * 23 22 5 43 43 H 1.07997 * 119.97294 * 180.27980 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2011 0.0005 5 6 4.2734 0.0002 0.0005 6 8 5.6324 0.0002 0.0016 7 6 6.2811 1.2735 0.0032 8 6 7.7980 1.0731 0.0049 9 6 8.4924 2.4364 0.0060 10 6 9.9865 2.2390 0.0070 11 8 10.4501 1.1183 0.0073 12 7 10.8075 3.3079 0.0086 13 6 12.2598 3.1160 0.0089 14 6 12.9439 4.4587 0.0102 15 1 12.3557 5.3645 0.0110 16 6 14.3208 4.5309 0.0112 17 7 15.0371 3.4281 0.0107 18 14 15.1688 6.1954 0.0120 19 1 15.3925 6.6362 1.4123 20 1 16.4744 6.0862 -0.6871 21 1 14.3136 7.1870 -0.6884 22 6 3.5787 -1.2005 -0.0060 23 6 4.3304 -2.5066 -0.0123 24 6 2.1971 -1.1979 -0.0008 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6558 2.1329 -0.0004 29 1 4.1170 2.1372 0.0010 30 1 5.9875 1.8298 0.8934 31 1 5.9890 1.8313 -0.8866 32 1 8.0898 0.5155 0.8948 33 1 8.0919 0.5167 -0.8851 34 1 8.2006 2.9936 -0.8841 35 1 8.1986 2.9931 0.8958 36 1 10.4367 4.2042 0.0087 37 1 12.5523 2.5580 0.8985 38 1 12.5532 2.5599 -0.8815 39 1 16.0058 3.4789 0.0111 40 1 4.5112 -2.8268 1.0138 41 1 3.7404 -3.2628 -0.5303 42 1 5.2832 -2.3750 -0.5250 43 1 1.6558 -2.1324 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427635816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:41 Heat of formation + Delta-G solvation = -103.438134 kcal Electronic energy + Delta-G solvation = -21615.755768 eV Core-core repulsion = 18238.114394 eV Total energy + Delta-G solvation = -3377.641375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24673 -40.54207 -38.74758 -36.21420 -34.99053 -34.34882 -33.85600 -32.42749 -29.92804 -28.21564 -28.04194 -26.71910 -24.90184 -23.60018 -22.05882 -21.62750 -21.21018 -19.21094 -18.69202 -17.58697 -17.42277 -17.03637 -16.93080 -16.38728 -16.04536 -15.78840 -15.25354 -15.11781 -14.79139 -14.46980 -14.22900 -14.07535 -13.98954 -13.92986 -13.69204 -13.34473 -13.24302 -12.83056 -12.75806 -12.74203 -12.66083 -12.39976 -12.22926 -12.17919 -12.03812 -11.60819 -11.49318 -11.46346 -10.81201 -10.78992 -9.83306 -9.74325 -8.89260 -8.29884 -6.46830 0.39203 0.48149 1.42905 1.45438 1.56676 1.77821 2.10032 2.35616 2.72644 2.78028 3.04989 3.74711 3.86624 3.89084 3.92392 4.02963 4.10046 4.24732 4.39307 4.39880 4.45532 4.46975 4.62366 4.67850 4.71290 4.79141 4.82907 4.90540 5.02918 5.05231 5.12060 5.16434 5.23108 5.23977 5.35335 5.41711 5.48694 5.52664 5.69615 5.71019 5.84281 5.94373 6.50995 6.64791 6.91274 7.22921 7.51251 8.82350 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.042941 B = 0.002030 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.898325 B =13790.835543 C =14401.074341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.130 4.130 3 C -0.094 4.094 4 C -0.209 4.209 5 C 0.101 3.899 6 O -0.333 6.333 7 C 0.065 3.935 8 C -0.098 4.098 9 C -0.119 4.119 10 C 0.491 3.509 11 O -0.608 6.608 12 N -0.708 5.708 13 C 0.263 3.737 14 C -0.556 4.556 15 H 0.086 0.914 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.987 3.013 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.254 1.254 22 C -0.136 4.136 23 C -0.104 4.104 24 C -0.091 4.091 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.411 0.589 37 H -0.014 1.014 38 H -0.014 1.014 39 H 0.268 0.732 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.077 -2.180 -0.044 31.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.131 4.131 3 C -0.112 4.112 4 C -0.227 4.227 5 C 0.056 3.944 6 O -0.247 6.247 7 C -0.009 4.009 8 C -0.136 4.136 9 C -0.158 4.158 10 C 0.279 3.721 11 O -0.491 6.491 12 N -0.358 5.358 13 C 0.140 3.860 14 C -0.594 4.594 15 H 0.104 0.896 16 C -0.198 4.198 17 N -0.570 5.570 18 Si 0.810 3.190 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.178 1.178 22 C -0.136 4.136 23 C -0.161 4.161 24 C -0.109 4.109 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.247 0.753 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -30.419 -3.178 -0.049 30.584 hybrid contribution 1.146 0.784 0.014 1.389 sum -29.273 -2.394 -0.035 29.371 Atomic orbital electron populations 1.20752 0.89198 1.03518 1.02861 1.20188 0.97647 0.92769 1.02463 1.21141 0.93093 0.98773 0.98174 1.21502 0.96028 0.97139 1.08070 1.19133 0.82276 0.94674 0.98359 1.86032 1.16770 1.33166 1.88760 1.22859 0.91344 0.83577 1.03132 1.21107 0.92320 0.96940 1.03237 1.21498 0.87814 0.99015 1.07521 1.21584 0.91071 0.84094 0.75361 1.90653 1.79478 1.26142 1.52798 1.46209 1.07403 1.09417 1.72750 1.18543 0.76782 0.96669 0.93968 1.21641 0.92453 0.92476 1.52852 0.89593 1.26107 0.98218 1.01617 0.93865 1.70143 1.06798 1.30114 1.49984 0.85131 0.77468 0.77858 0.78591 1.19606 1.21053 1.17781 1.19580 0.94190 0.93869 1.05985 1.20600 0.99663 0.93400 1.02411 1.21023 0.91871 0.99018 0.99007 0.90689 0.90887 0.90763 0.83755 0.83837 0.90013 0.90023 0.92275 0.92289 0.85532 0.85518 0.75332 0.99646 0.99633 0.92274 0.91322 0.90062 0.92668 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 71.23 0.71 -0.26 16 2 C -0.13 -1.97 5.88 -19.85 -0.12 -2.09 16 3 C -0.09 -1.46 9.69 22.25 0.22 -1.24 16 4 C -0.21 -3.81 9.04 22.37 0.20 -3.60 16 5 C 0.10 2.27 6.66 22.51 0.15 2.42 16 6 O -0.33 -8.31 9.18 -92.46 -0.85 -9.16 16 7 C 0.07 1.27 4.74 71.98 0.34 1.62 16 8 C -0.10 -2.49 4.87 30.60 0.15 -2.35 16 9 C -0.12 -2.79 5.70 29.85 0.17 -2.62 16 10 C 0.49 19.14 7.83 87.66 0.69 19.82 16 11 O -0.61 -30.48 15.98 -3.03 -0.05 -30.53 16 12 N -0.71 -29.32 5.55 -466.78 -2.59 -31.91 16 13 C 0.26 14.55 5.43 85.63 0.46 15.01 16 14 C -0.56 -30.21 9.28 25.60 0.24 -29.98 16 15 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.08 5.46 84.66 0.46 0.54 16 17 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 18 Si 0.99 42.17 29.54 68.60 2.03 44.20 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 22 C -0.14 -2.84 5.89 -19.77 -0.12 -2.96 16 23 C -0.10 -1.98 9.79 71.23 0.70 -1.29 16 24 C -0.09 -1.53 9.35 22.25 0.21 -1.32 16 25 H 0.07 0.58 8.14 -2.38 -0.02 0.57 16 26 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 27 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 28 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 29 H 0.14 2.03 6.30 -2.91 -0.02 2.01 16 30 H 0.08 1.27 7.66 -2.39 -0.02 1.25 16 31 H 0.08 1.27 7.66 -2.39 -0.02 1.25 16 32 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 33 H 0.06 1.75 8.10 -2.39 -0.02 1.73 16 34 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.41 13.56 8.32 -92.71 -0.77 12.78 16 37 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 38 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 42 H 0.05 1.23 7.53 -2.39 -0.02 1.21 16 43 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -76.50 363.28 3.51 -72.98 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.22 Total: 18.99 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 4.46 Total: -8.28 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -2.30 Total: -88.20 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.90 Total: -39.69 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -76.50 3.51 -72.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427635816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.455 kcal (2) G-P(sol) polarization free energy of solvation -76.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds