Wall clock time and date at job start Tue Mar 31 2020 07:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38093 * 119.96026 * 2 1 4 4 C 1.38508 * 120.39193 * 180.02562 * 3 2 1 5 5 C 1.37828 * 120.29819 * 0.23298 * 4 3 2 6 6 C 1.39671 * 119.90675 * 359.46893 * 5 4 3 7 7 C 1.47541 * 120.18987 * 180.27833 * 6 5 4 8 8 O 1.21589 * 119.99590 * 180.27680 * 7 6 5 9 9 N 1.34777 * 120.00132 * 0.27064 * 7 6 5 10 10 C 1.46502 * 119.99730 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46750 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46919 * 299.99831 * 11 10 9 13 13 C 1.53000 * 109.47505 * 59.99379 * 11 10 9 14 14 C 1.52998 * 109.47382 * 180.02562 * 11 10 9 15 15 C 1.50696 * 109.47576 * 179.97438 * 14 11 10 16 16 H 1.08000 * 119.99657 * 359.97438 * 15 14 11 17 17 C 1.37874 * 119.99998 * 180.02562 * 15 14 11 18 18 N 1.31515 * 120.00029 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00057 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47101 * 89.99384 * 19 17 15 21 21 H 1.48489 * 109.47346 * 209.99884 * 19 17 15 22 22 H 1.48502 * 109.46917 * 329.99742 * 19 17 15 23 23 C 1.38671 * 119.95530 * 179.97438 * 2 1 3 24 24 O 1.35654 * 120.15245 * 359.97438 * 23 2 1 25 25 H 1.09008 * 109.47189 * 90.00160 * 1 2 3 26 26 H 1.09003 * 109.47859 * 210.00001 * 1 2 3 27 27 H 1.08999 * 109.47710 * 330.00802 * 1 2 3 28 28 H 1.08000 * 119.80545 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.84813 * 179.97438 * 4 3 2 30 30 H 1.08000 * 120.04789 * 179.74233 * 5 4 3 31 31 H 0.96997 * 119.99976 * 0.02562 * 9 7 6 32 32 H 1.08995 * 109.46940 * 299.99649 * 10 9 7 33 33 H 1.08994 * 109.47245 * 60.00036 * 10 9 7 34 34 H 1.08992 * 109.47668 * 60.00140 * 12 11 10 35 35 H 1.09004 * 109.46827 * 180.02562 * 12 11 10 36 36 H 1.09008 * 109.46889 * 299.99799 * 12 11 10 37 37 H 1.09000 * 109.46653 * 60.00087 * 13 11 10 38 38 H 1.09004 * 109.47250 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.47471 * 300.00414 * 13 11 10 40 40 H 1.09000 * 109.46760 * 299.99903 * 14 11 10 41 41 H 1.09000 * 109.47125 * 59.99061 * 14 11 10 42 42 H 0.97005 * 119.99905 * 180.02562 * 18 17 15 43 43 H 0.96710 * 113.99879 * 89.99914 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1966 1.1964 0.0000 4 6 3.5816 1.2068 -0.0005 5 6 4.2859 0.0221 -0.0059 6 6 3.6011 -1.1952 0.0004 7 6 4.3488 -2.4671 0.0009 8 8 3.7490 -3.5248 0.0013 9 7 5.6965 -2.4566 0.0008 10 6 6.4388 -3.7196 0.0007 11 6 7.9408 -3.4283 0.0012 12 6 8.3045 -2.6228 -1.2478 13 6 8.3038 -2.6233 1.2506 14 6 8.7162 -4.7472 0.0005 15 6 10.1956 -4.4603 0.0004 16 1 10.5476 -3.4393 0.0003 17 6 11.0997 -5.5013 -0.0008 18 7 10.6710 -6.7446 -0.0013 19 14 12.9336 -5.1457 -0.0017 20 1 13.4203 -5.0521 1.3982 21 1 13.6499 -6.2412 -0.7027 22 1 13.1882 -3.8607 -0.7012 23 6 2.1994 -1.2015 0.0005 24 8 1.5233 -2.3775 0.0016 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3635 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6528 2.1295 -0.0004 29 1 4.1121 2.1476 -0.0009 30 1 5.3658 0.0350 -0.0105 31 1 6.1749 -1.6128 0.0007 32 1 6.1800 -4.2931 0.8907 33 1 6.1799 -4.2932 -0.8892 34 1 7.7522 -1.6832 -1.2479 35 1 9.3747 -2.4157 -1.2477 36 1 8.0459 -3.1964 -2.1380 37 1 8.0447 -3.1971 2.1404 38 1 9.3740 -2.4161 1.2512 39 1 7.7515 -1.6836 1.2507 40 1 8.4572 -5.3214 0.8900 41 1 8.4575 -5.3203 -0.8899 42 1 11.3071 -7.4770 -0.0017 43 1 1.3269 -2.7191 -0.8816 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436734845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:50 Heat of formation + Delta-G solvation = -96.412840 kcal Electronic energy + Delta-G solvation = -23088.988541 eV Core-core repulsion = 19711.651806 eV Total energy + Delta-G solvation = -3377.336735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.56754 -40.03733 -38.51143 -37.63497 -35.27814 -34.20736 -33.42073 -31.18483 -29.11648 -28.04000 -27.97776 -27.43918 -25.36045 -24.06259 -22.74085 -21.30665 -20.03683 -19.23719 -18.40266 -18.22949 -17.33927 -16.75070 -16.54686 -16.27725 -16.10764 -15.63149 -15.25046 -14.99741 -14.82940 -14.47587 -14.22631 -14.01714 -13.94588 -13.80179 -13.27384 -13.11059 -12.89573 -12.78093 -12.72046 -12.59014 -12.41256 -12.35041 -12.23147 -11.99038 -11.69203 -11.55417 -11.13270 -10.90381 -10.71763 -10.51644 -10.18995 -9.79884 -9.54262 -8.14046 -6.22140 -0.20442 0.26390 1.42828 1.43348 1.53711 1.85760 2.14782 2.44985 2.72883 3.20480 3.27858 3.66983 3.78854 3.96339 4.03284 4.05996 4.19621 4.30817 4.35094 4.62087 4.67507 4.69537 4.75543 4.79594 4.83211 4.87480 4.94234 5.08177 5.10953 5.22419 5.27287 5.35688 5.40214 5.44743 5.48107 5.49057 5.51840 5.56288 5.79007 5.83699 5.89376 6.29625 6.54489 6.79115 6.93060 7.21375 7.45762 8.98646 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036565 B = 0.003021 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.568784 B = 9265.112914 C = 9826.460970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.131 4.131 3 C -0.075 4.075 4 C -0.128 4.128 5 C -0.079 4.079 6 C -0.184 4.184 7 C 0.546 3.454 8 O -0.573 6.573 9 N -0.705 5.705 10 C 0.142 3.858 11 C -0.064 4.064 12 C -0.122 4.122 13 C -0.122 4.122 14 C 0.040 3.960 15 C -0.513 4.513 16 H 0.075 0.925 17 C -0.006 4.006 18 N -0.940 5.940 19 Si 0.960 3.040 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.258 1.258 23 C 0.141 3.859 24 O -0.495 6.495 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.164 0.836 29 H 0.165 0.835 30 H 0.147 0.853 31 H 0.411 0.589 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.035 0.965 38 H 0.059 0.941 39 H 0.069 0.931 40 H -0.016 1.016 41 H -0.014 1.014 42 H 0.259 0.741 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.953 21.966 -1.829 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.131 4.131 3 C -0.093 4.093 4 C -0.145 4.145 5 C -0.098 4.098 6 C -0.188 4.188 7 C 0.335 3.665 8 O -0.454 6.454 9 N -0.358 5.358 10 C 0.018 3.982 11 C -0.065 4.065 12 C -0.179 4.179 13 C -0.180 4.180 14 C 0.002 3.998 15 C -0.551 4.551 16 H 0.093 0.907 17 C -0.203 4.203 18 N -0.581 5.581 19 Si 0.785 3.215 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.182 1.182 23 C 0.095 3.905 24 O -0.307 6.307 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.181 0.819 29 H 0.183 0.817 30 H 0.164 0.836 31 H 0.250 0.750 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.003 0.997 41 H 0.004 0.996 42 H 0.068 0.932 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -17.266 21.084 -1.235 27.280 hybrid contribution 1.270 -0.938 -0.419 1.633 sum -15.996 20.147 -1.654 25.778 Atomic orbital electron populations 1.20721 0.88766 1.03683 1.03364 1.20522 0.98252 0.91825 1.02526 1.21584 0.94535 0.97854 0.95287 1.21500 0.94401 0.98680 0.99947 1.21518 1.00988 0.90855 0.96421 1.20412 0.94071 0.93457 1.10855 1.18639 0.82362 0.89295 0.76174 1.90767 1.69417 1.33879 1.51298 1.45881 1.05510 1.10116 1.74305 1.21232 0.91461 0.85351 1.00136 1.20713 0.91027 0.97461 0.97260 1.21700 1.01940 0.98646 0.95586 1.21707 1.01975 0.98648 0.95639 1.18971 0.94769 0.91725 0.94325 1.21588 0.91669 0.93094 1.48728 0.90748 1.25972 1.03909 0.94965 0.95460 1.70131 1.35887 0.99475 1.52603 0.85522 0.79660 0.78102 0.78223 1.20186 1.21627 1.18166 1.18657 0.88356 0.86278 0.97255 1.84681 1.75566 1.36078 1.34398 0.89905 0.92088 0.89344 0.81860 0.81701 0.83583 0.75015 0.93851 0.93456 0.91196 0.92276 0.94393 0.94593 0.92187 0.91249 0.99729 0.99557 0.93183 0.73910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.79 71.23 0.70 -0.63 16 2 C -0.13 -2.22 5.89 -19.80 -0.12 -2.34 16 3 C -0.07 -0.89 9.68 22.30 0.22 -0.68 16 4 C -0.13 -1.54 10.02 22.24 0.22 -1.32 16 5 C -0.08 -1.37 9.54 22.52 0.21 -1.16 16 6 C -0.18 -4.66 5.89 -20.01 -0.12 -4.77 16 7 C 0.55 17.86 7.76 86.70 0.67 18.53 16 8 O -0.57 -23.57 15.16 16.92 0.26 -23.31 16 9 N -0.70 -20.97 4.91 -466.27 -2.29 -23.26 16 10 C 0.14 5.31 4.56 86.38 0.39 5.71 16 11 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 12 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 13 C -0.12 -4.15 8.05 71.98 0.58 -3.57 16 14 C 0.04 2.04 4.04 29.85 0.12 2.16 16 15 C -0.51 -27.50 7.65 25.60 0.20 -27.30 16 16 H 0.07 3.70 5.68 -2.91 -0.02 3.69 16 17 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 18 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 19 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 23 C 0.14 3.40 6.69 22.84 0.15 3.55 16 24 O -0.50 -13.21 10.62 -68.78 -0.73 -13.94 16 25 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.06 0.93 7.53 -2.39 -0.02 0.92 16 27 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 28 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 29 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.15 1.91 6.40 -2.91 -0.02 1.89 16 31 H 0.41 9.44 4.19 -92.71 -0.39 9.05 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 35 H 0.06 2.09 6.61 -2.38 -0.02 2.08 16 36 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 2.14 6.62 -2.38 -0.02 2.12 16 39 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 40 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 41 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 42 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 43 H 0.40 8.04 9.06 -74.05 -0.67 7.37 16 Total: -1.00 -75.32 347.77 3.76 -71.56 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -0.03 Total: 18.32 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 4.25 Total: -17.66 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -2.00 Total: -80.55 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.47 Total: -37.25 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -75.32 3.76 -71.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436734845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.858 kcal (2) G-P(sol) polarization free energy of solvation -75.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds