Wall clock time and date at job start Tue Mar 31 2020 06:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37722 * 120.04443 * 2 1 4 4 C 1.38979 * 120.08656 * 180.31694 * 3 2 1 5 5 O 1.35713 * 119.91344 * 179.69675 * 4 3 2 6 6 C 1.39018 * 120.17417 * 359.67663 * 4 3 2 7 7 C 1.50702 * 119.95184 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47154 * 120.02356 * 7 6 4 9 9 C 1.53009 * 109.46715 * 240.02019 * 7 6 4 10 10 C 1.37680 * 120.08915 * 0.04131 * 6 4 3 11 11 C 1.39711 * 120.04310 * 179.73550 * 2 1 3 12 12 C 1.47603 * 120.08891 * 359.97438 * 11 2 1 13 13 O 1.21584 * 119.99712 * 353.46660 * 12 11 2 14 14 N 1.34775 * 120.00255 * 173.46472 * 12 11 2 15 15 C 1.46495 * 120.00451 * 179.97438 * 14 12 11 16 16 H 1.09004 * 109.46708 * 35.00092 * 15 14 12 17 17 C 1.53004 * 109.47439 * 275.00642 * 15 14 12 18 18 C 1.50699 * 109.47315 * 154.99954 * 15 14 12 19 19 H 1.07997 * 119.99848 * 0.02562 * 18 15 14 20 20 C 1.37874 * 119.99825 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00316 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99909 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47254 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47122 * 119.99967 * 22 20 18 25 25 H 1.48497 * 109.47408 * 239.99916 * 22 20 18 26 26 H 1.08992 * 109.47421 * 263.65065 * 1 2 3 27 27 H 1.08999 * 109.46860 * 23.65021 * 1 2 3 28 28 H 1.09004 * 109.46835 * 143.64716 * 1 2 3 29 29 H 1.07996 * 119.95931 * 0.03565 * 3 2 1 30 30 H 0.96699 * 113.99882 * 269.98519 * 5 4 3 31 31 H 1.08996 * 109.47057 * 0.02562 * 7 6 4 32 32 H 1.08994 * 109.47354 * 59.99571 * 8 7 6 33 33 H 1.08996 * 109.46793 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.46665 * 299.99550 * 8 7 6 35 35 H 1.09001 * 109.46717 * 180.02562 * 9 7 6 36 36 H 1.08994 * 109.47134 * 300.00025 * 9 7 6 37 37 H 1.08996 * 109.46834 * 59.99977 * 9 7 6 38 38 H 1.08004 * 120.04105 * 180.02562 * 10 6 4 39 39 H 0.96999 * 119.99787 * 0.02562 * 14 12 11 40 40 H 1.08996 * 109.47316 * 180.02562 * 17 15 14 41 41 H 1.09000 * 109.47273 * 59.99255 * 17 15 14 42 42 H 1.09008 * 109.46560 * 299.99919 * 17 15 14 43 43 H 0.97003 * 119.99969 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1922 0.0000 4 6 3.5863 1.1932 -0.0067 5 8 4.2622 2.3700 -0.0129 6 6 4.2860 -0.0081 -0.0065 7 6 5.7930 -0.0011 -0.0132 8 6 6.3118 -0.7172 1.2354 9 6 6.3007 -0.7229 -1.2631 10 6 3.6040 -1.2041 -0.0007 11 6 2.2065 -1.2094 0.0056 12 6 1.4714 -2.4894 0.0121 13 8 0.2616 -2.4949 0.1324 14 7 2.1413 -3.6519 -0.1154 15 6 1.4119 -4.9223 -0.1084 16 1 0.4471 -4.7899 -0.5982 17 6 1.1923 -5.3765 1.3361 18 6 2.2113 -5.9647 -0.8469 19 1 3.1673 -5.7067 -1.2779 20 6 1.7221 -7.2476 -0.9722 21 7 0.5577 -7.5616 -0.4478 22 14 2.7134 -8.5399 -1.8870 23 1 3.9789 -7.9374 -2.3777 24 1 3.0247 -9.6657 -0.9699 25 1 1.9249 -9.0442 -3.0398 26 1 -0.3634 -0.1136 1.0213 27 1 -0.3633 0.9414 -0.4123 28 1 -0.3633 -0.8277 -0.6092 29 1 1.6566 2.1275 0.0006 30 1 4.4541 2.7087 -0.8980 31 1 6.1515 1.0282 -0.0170 32 1 5.9532 -1.7464 1.2393 33 1 7.4017 -0.7125 1.2303 34 1 5.9501 -0.2030 2.1257 35 1 7.3907 -0.7183 -1.2677 36 1 5.9422 -1.7522 -1.2592 37 1 5.9311 -0.2128 -2.1526 38 1 4.1483 -2.1369 -0.0002 39 1 3.1066 -3.6474 -0.2110 40 1 0.6500 -6.3219 1.3412 41 1 0.6141 -4.6225 1.8702 42 1 2.1572 -5.5088 1.8258 43 1 0.2134 -8.4641 -0.5363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436875787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:07 Heat of formation + Delta-G solvation = -75.420372 kcal Electronic energy + Delta-G solvation = -23578.462785 eV Core-core repulsion = 20202.036352 eV Total energy + Delta-G solvation = -3376.426433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45453 -38.76707 -36.65994 -35.79215 -34.73299 -32.62725 -31.23857 -30.31901 -28.50331 -27.22741 -26.63580 -25.26468 -23.73121 -22.43122 -21.37911 -19.87059 -19.48986 -18.09716 -17.50739 -16.41687 -15.76774 -15.39792 -15.15295 -14.71600 -14.40507 -14.20214 -13.93535 -13.76586 -13.40999 -13.20187 -12.94822 -12.42073 -12.37282 -12.35409 -12.33513 -11.75389 -11.70622 -11.57630 -11.46866 -11.10004 -11.07554 -10.95004 -10.83789 -10.72952 -10.35210 -10.28321 -10.24930 -9.05266 -8.92419 -8.75859 -8.57227 -8.42909 -7.87429 -6.13764 -4.22987 0.91501 1.32909 3.15884 3.22670 3.30540 3.33017 3.97983 4.06278 4.14886 4.36647 4.52415 4.68947 4.96472 5.09111 5.12847 5.18789 5.25354 5.31980 5.51085 5.53921 5.61918 5.73296 5.75864 5.82400 5.92581 5.97668 6.06306 6.10733 6.14346 6.25768 6.38231 6.48171 6.69852 6.78076 6.85135 6.97305 7.14121 7.44590 7.50632 7.55388 7.68359 7.90440 8.13552 8.63803 8.76401 9.08918 9.44607 10.92269 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.004462 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.995958 B = 6274.280277 C = 7448.969566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.015 4.015 3 C -0.156 4.156 4 C 0.124 3.876 5 O -0.496 6.496 6 C -0.118 4.118 7 C -0.052 4.052 8 C -0.145 4.145 9 C -0.147 4.147 10 C -0.064 4.064 11 C -0.132 4.132 12 C 0.542 3.458 13 O -0.545 6.545 14 N -0.702 5.702 15 C 0.264 3.736 16 H 0.050 0.950 17 C -0.147 4.147 18 C -0.533 4.533 19 H 0.061 0.939 20 C 0.067 3.933 21 N -0.883 5.883 22 Si 0.901 3.099 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.101 0.899 29 H 0.130 0.870 30 H 0.388 0.612 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.131 0.869 39 H 0.387 0.613 40 H 0.090 0.910 41 H 0.015 0.985 42 H 0.026 0.974 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.406 16.585 -0.342 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.017 4.017 3 C -0.175 4.175 4 C 0.079 3.921 5 O -0.306 6.306 6 C -0.119 4.119 7 C -0.071 4.071 8 C -0.202 4.202 9 C -0.204 4.204 10 C -0.083 4.083 11 C -0.136 4.136 12 C 0.328 3.672 13 O -0.425 6.425 14 N -0.349 5.349 15 C 0.163 3.837 16 H 0.068 0.932 17 C -0.205 4.205 18 C -0.572 4.572 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.729 3.271 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.119 0.881 29 H 0.148 0.852 30 H 0.244 0.756 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.149 0.851 39 H 0.220 0.780 40 H 0.109 0.891 41 H 0.034 0.966 42 H 0.045 0.955 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.380 16.299 0.370 18.331 hybrid contribution 1.077 -0.646 -0.957 1.579 sum 9.457 15.653 -0.587 18.298 Atomic orbital electron populations 1.21082 0.89771 1.02811 1.03878 1.19906 0.97004 0.90889 0.93861 1.21210 0.93112 0.98248 1.04923 1.18413 0.89592 0.84654 0.99452 1.84744 1.76560 1.36024 1.33272 1.20008 0.96009 0.92228 1.03609 1.19999 0.90118 1.01008 0.95957 1.21856 1.00620 1.00734 0.96974 1.21900 1.00775 1.00945 0.96778 1.21076 0.92865 0.97754 0.96593 1.20179 0.93412 0.94363 1.05618 1.18119 0.87329 0.83733 0.77980 1.90678 1.13682 1.87179 1.51007 1.46505 1.10554 1.07071 1.70815 1.18780 0.93261 0.77878 0.93827 0.93182 1.22077 0.99230 1.02116 0.97116 1.21238 1.05546 0.94767 1.35617 0.92075 1.24878 0.95049 0.98314 0.95411 1.69911 1.17931 1.20111 1.44063 0.86401 0.79996 0.81275 0.79473 1.19745 1.20864 1.20858 0.90666 0.92936 0.88085 0.85170 0.75613 0.89908 0.92202 0.92385 0.92551 0.92348 0.92074 0.92713 0.85140 0.77998 0.89103 0.96569 0.95498 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.72 36.01 0.31 -1.46 16 2 C -0.02 -0.23 5.91 -104.26 -0.62 -0.85 16 3 C -0.16 -2.00 9.60 -39.50 -0.38 -2.38 16 4 C 0.12 1.49 6.69 -39.02 -0.26 1.23 16 5 O -0.50 -4.91 12.24 -18.84 -0.23 -5.14 16 6 C -0.12 -1.45 4.79 -104.54 -0.50 -1.95 16 7 C -0.05 -0.53 3.05 -91.77 -0.28 -0.81 16 8 C -0.14 -1.44 9.00 37.16 0.33 -1.10 16 9 C -0.15 -1.35 9.01 37.16 0.33 -1.02 16 10 C -0.06 -0.90 8.17 -39.22 -0.32 -1.22 16 11 C -0.13 -2.21 5.87 -104.96 -0.62 -2.82 16 12 C 0.54 11.14 7.66 -12.44 -0.10 11.04 16 13 O -0.54 -12.72 13.00 5.29 0.07 -12.65 16 14 N -0.70 -14.82 5.02 -55.96 -0.28 -15.10 16 15 C 0.26 6.71 2.56 -69.08 -0.18 6.53 16 16 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 17 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 18 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 21 N -0.88 -24.71 11.32 55.43 0.63 -24.09 16 22 Si 0.90 20.50 29.54 -169.99 -5.02 15.47 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.63 8.04 -51.93 -0.42 0.21 16 28 H 0.10 1.77 5.86 -51.93 -0.30 1.47 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.39 2.03 9.06 45.56 0.41 2.44 16 31 H 0.08 0.78 6.98 -51.93 -0.36 0.42 16 32 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.61 7.38 -51.93 -0.38 0.23 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.13 1.71 5.47 -52.48 -0.29 1.43 16 39 H 0.39 7.13 6.60 -40.82 -0.27 6.86 16 40 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -30.74 348.29 -7.53 -38.27 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.63 Total: 8.76 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.31 Total: -10.78 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.35 Total: -39.19 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.16 Total: -17.79 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.74 -7.53 -38.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436875787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.152 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds