Wall clock time and date at job start Tue Mar 31 2020 06:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37722 * 120.04443 * 2 1 4 4 C 1.38979 * 120.08656 * 180.31694 * 3 2 1 5 5 O 1.35713 * 119.91344 * 179.69675 * 4 3 2 6 6 C 1.39018 * 120.17417 * 359.67663 * 4 3 2 7 7 C 1.50702 * 119.95184 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47154 * 120.02356 * 7 6 4 9 9 C 1.53009 * 109.46715 * 240.02019 * 7 6 4 10 10 C 1.37680 * 120.08915 * 0.04131 * 6 4 3 11 11 C 1.39711 * 120.04310 * 179.73550 * 2 1 3 12 12 C 1.47603 * 120.08891 * 359.97438 * 11 2 1 13 13 O 1.21584 * 119.99712 * 353.46660 * 12 11 2 14 14 N 1.34775 * 120.00255 * 173.46472 * 12 11 2 15 15 C 1.46495 * 120.00451 * 179.97438 * 14 12 11 16 16 H 1.09004 * 109.46708 * 35.00092 * 15 14 12 17 17 C 1.53004 * 109.47439 * 275.00642 * 15 14 12 18 18 C 1.50699 * 109.47315 * 154.99954 * 15 14 12 19 19 H 1.07997 * 119.99848 * 0.02562 * 18 15 14 20 20 C 1.37874 * 119.99825 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00316 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99909 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47254 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47122 * 119.99967 * 22 20 18 25 25 H 1.48497 * 109.47408 * 239.99916 * 22 20 18 26 26 H 1.08992 * 109.47421 * 263.65065 * 1 2 3 27 27 H 1.08999 * 109.46860 * 23.65021 * 1 2 3 28 28 H 1.09004 * 109.46835 * 143.64716 * 1 2 3 29 29 H 1.07996 * 119.95931 * 0.03565 * 3 2 1 30 30 H 0.96699 * 113.99882 * 269.98519 * 5 4 3 31 31 H 1.08996 * 109.47057 * 0.02562 * 7 6 4 32 32 H 1.08994 * 109.47354 * 59.99571 * 8 7 6 33 33 H 1.08996 * 109.46793 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.46665 * 299.99550 * 8 7 6 35 35 H 1.09001 * 109.46717 * 180.02562 * 9 7 6 36 36 H 1.08994 * 109.47134 * 300.00025 * 9 7 6 37 37 H 1.08996 * 109.46834 * 59.99977 * 9 7 6 38 38 H 1.08004 * 120.04105 * 180.02562 * 10 6 4 39 39 H 0.96999 * 119.99787 * 0.02562 * 14 12 11 40 40 H 1.08996 * 109.47316 * 180.02562 * 17 15 14 41 41 H 1.09000 * 109.47273 * 59.99255 * 17 15 14 42 42 H 1.09008 * 109.46560 * 299.99919 * 17 15 14 43 43 H 0.97003 * 119.99969 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1922 0.0000 4 6 3.5863 1.1932 -0.0067 5 8 4.2622 2.3700 -0.0129 6 6 4.2860 -0.0081 -0.0065 7 6 5.7930 -0.0011 -0.0132 8 6 6.3118 -0.7172 1.2354 9 6 6.3007 -0.7229 -1.2631 10 6 3.6040 -1.2041 -0.0007 11 6 2.2065 -1.2094 0.0056 12 6 1.4714 -2.4894 0.0121 13 8 0.2616 -2.4949 0.1324 14 7 2.1413 -3.6519 -0.1154 15 6 1.4119 -4.9223 -0.1084 16 1 0.4471 -4.7899 -0.5982 17 6 1.1923 -5.3765 1.3361 18 6 2.2113 -5.9647 -0.8469 19 1 3.1673 -5.7067 -1.2779 20 6 1.7221 -7.2476 -0.9722 21 7 0.5577 -7.5616 -0.4478 22 14 2.7134 -8.5399 -1.8870 23 1 3.9789 -7.9374 -2.3777 24 1 3.0247 -9.6657 -0.9699 25 1 1.9249 -9.0442 -3.0398 26 1 -0.3634 -0.1136 1.0213 27 1 -0.3633 0.9414 -0.4123 28 1 -0.3633 -0.8277 -0.6092 29 1 1.6566 2.1275 0.0006 30 1 4.4541 2.7087 -0.8980 31 1 6.1515 1.0282 -0.0170 32 1 5.9532 -1.7464 1.2393 33 1 7.4017 -0.7125 1.2303 34 1 5.9501 -0.2030 2.1257 35 1 7.3907 -0.7183 -1.2677 36 1 5.9422 -1.7522 -1.2592 37 1 5.9311 -0.2128 -2.1526 38 1 4.1483 -2.1369 -0.0002 39 1 3.1066 -3.6474 -0.2110 40 1 0.6500 -6.3219 1.3412 41 1 0.6141 -4.6225 1.8702 42 1 2.1572 -5.5088 1.8258 43 1 0.2134 -8.4641 -0.5363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436875787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:06 Heat of formation + Delta-G solvation = -95.328429 kcal Electronic energy + Delta-G solvation = -23579.326064 eV Core-core repulsion = 20202.036352 eV Total energy + Delta-G solvation = -3377.289711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.61717 -40.17839 -37.68146 -36.99789 -36.32265 -34.47314 -32.48502 -31.62529 -30.13953 -27.95561 -27.76441 -27.34052 -24.96365 -23.64694 -22.77690 -21.34173 -20.84011 -19.21691 -18.83913 -17.89576 -17.33952 -16.79170 -16.42238 -16.16847 -15.89240 -15.51206 -14.88737 -14.77920 -14.73998 -14.42640 -14.30785 -14.05023 -13.68662 -13.55177 -13.49213 -13.10274 -12.96835 -12.87837 -12.81702 -12.68264 -12.50890 -12.36677 -12.28241 -12.10205 -11.93936 -11.62223 -11.26367 -11.09957 -10.64823 -10.50242 -9.89212 -9.76855 -9.39688 -8.18303 -6.35865 -0.21768 0.28328 1.44175 1.45007 1.57145 1.87550 2.33554 2.58641 2.73571 3.12414 3.18963 3.62450 3.72069 3.87236 4.01480 4.21620 4.33356 4.41179 4.47583 4.59954 4.71138 4.81021 4.82338 4.83909 4.90477 4.92015 4.98616 5.02880 5.03754 5.07710 5.20910 5.29539 5.31255 5.39422 5.40938 5.55451 5.58439 5.64175 5.67413 5.76730 5.89745 6.08301 6.71025 6.82507 6.92097 7.30564 7.49695 8.88375 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.004462 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.995958 B = 6274.280277 C = 7448.969566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.026 4.026 3 C -0.154 4.154 4 C 0.143 3.857 5 O -0.495 6.495 6 C -0.118 4.118 7 C -0.048 4.048 8 C -0.146 4.146 9 C -0.146 4.146 10 C -0.061 4.061 11 C -0.160 4.160 12 C 0.538 3.462 13 O -0.582 6.582 14 N -0.700 5.700 15 C 0.271 3.729 16 H 0.001 0.999 17 C -0.133 4.133 18 C -0.546 4.546 19 H 0.072 0.928 20 C 0.016 3.984 21 N -0.917 5.917 22 Si 0.973 3.027 23 H -0.260 1.260 24 H -0.278 1.278 25 H -0.283 1.283 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.156 0.844 30 H 0.413 0.587 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.135 0.865 39 H 0.400 0.600 40 H 0.068 0.932 41 H 0.011 0.989 42 H 0.039 0.961 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.349 18.462 -0.975 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.027 4.027 3 C -0.172 4.172 4 C 0.097 3.903 5 O -0.309 6.309 6 C -0.118 4.118 7 C -0.066 4.066 8 C -0.203 4.203 9 C -0.203 4.203 10 C -0.080 4.080 11 C -0.163 4.163 12 C 0.327 3.673 13 O -0.465 6.465 14 N -0.349 5.349 15 C 0.168 3.832 16 H 0.019 0.981 17 C -0.192 4.192 18 C -0.584 4.584 19 H 0.090 0.910 20 C -0.185 4.185 21 N -0.555 5.555 22 Si 0.797 3.203 23 H -0.183 1.183 24 H -0.204 1.204 25 H -0.209 1.209 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.173 0.827 30 H 0.274 0.726 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.153 0.847 39 H 0.236 0.764 40 H 0.087 0.913 41 H 0.030 0.970 42 H 0.058 0.942 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.365 18.215 -0.280 21.471 hybrid contribution 0.186 -1.067 -0.754 1.320 sum 11.551 17.147 -1.034 20.701 Atomic orbital electron populations 1.20967 0.90213 1.03071 1.02826 1.19994 0.96963 0.91345 0.94426 1.21396 0.93631 0.98079 1.04098 1.18447 0.89431 0.85360 0.97031 1.84687 1.75984 1.34754 1.35439 1.20264 0.97394 0.91598 1.02584 1.20046 0.88273 1.01961 0.96330 1.21877 1.01781 1.00076 0.96613 1.21899 1.01810 1.00162 0.96445 1.21108 0.91712 0.98953 0.96247 1.19890 0.94366 0.92592 1.09477 1.18773 0.87126 0.84817 0.76577 1.90661 1.15503 1.87884 1.52490 1.46240 1.11067 1.06134 1.71475 1.18382 0.91668 0.79758 0.93396 0.98060 1.21896 0.99382 1.00735 0.97152 1.21536 1.05947 0.95144 1.35791 0.90978 1.25790 0.95993 1.00536 0.96131 1.70057 1.19576 1.20672 1.45199 0.85287 0.78744 0.78310 0.77934 1.18345 1.20377 1.20914 0.91618 0.89742 0.91445 0.82666 0.72620 0.88499 0.93078 0.90631 0.93270 0.90749 0.93197 0.92320 0.84731 0.76385 0.91298 0.96993 0.94209 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.47 8.72 71.24 0.62 -2.85 16 2 C -0.03 -0.78 5.91 -19.63 -0.12 -0.89 16 3 C -0.15 -3.52 9.60 22.33 0.21 -3.31 16 4 C 0.14 2.97 6.69 22.63 0.15 3.12 16 5 O -0.49 -7.56 12.24 -90.34 -1.11 -8.67 16 6 C -0.12 -2.60 4.79 -19.81 -0.09 -2.70 16 7 C -0.05 -0.81 3.05 -11.54 -0.04 -0.85 16 8 C -0.15 -2.54 9.00 71.98 0.65 -1.89 16 9 C -0.15 -2.26 9.01 71.99 0.65 -1.62 16 10 C -0.06 -1.67 8.17 22.50 0.18 -1.49 16 11 C -0.16 -5.38 5.87 -20.08 -0.12 -5.50 16 12 C 0.54 23.13 7.66 86.72 0.66 23.80 16 13 O -0.58 -29.03 13.00 -3.98 -0.05 -29.08 16 14 N -0.70 -30.63 5.02 -449.21 -2.25 -32.88 16 15 C 0.27 14.38 2.56 44.25 0.11 14.49 16 16 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 17 C -0.13 -6.90 9.26 71.98 0.67 -6.23 16 18 C -0.55 -29.16 8.73 25.60 0.22 -28.94 16 19 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 20 C 0.02 0.84 5.30 84.65 0.45 1.29 16 21 N -0.92 -52.76 11.32 21.45 0.24 -52.52 16 22 Si 0.97 41.98 29.54 68.60 2.03 44.01 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.08 1.92 8.04 -2.39 -0.02 1.91 16 28 H 0.07 2.52 5.86 -2.39 -0.01 2.50 16 29 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.41 2.26 9.06 -74.06 -0.67 1.59 16 31 H 0.10 1.41 6.98 -2.39 -0.02 1.39 16 32 H 0.05 0.97 7.38 -2.39 -0.02 0.95 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 0.89 7.38 -2.39 -0.02 0.87 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.14 3.45 5.47 -2.91 -0.02 3.43 16 39 H 0.40 14.99 6.60 -92.71 -0.61 14.38 16 40 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 41 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.04 1.89 8.14 -2.38 -0.02 1.88 16 43 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -68.84 348.29 2.83 -66.02 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.25 Total: 26.67 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 4.22 Total: -13.56 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -2.01 Total: -85.40 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -1.16 Total: -37.74 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -68.84 2.83 -66.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436875787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.312 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds