Wall clock time and date at job start Tue Mar 31 2020 06:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37729 * 120.04215 * 2 1 4 4 C 1.38970 * 120.08518 * 179.97438 * 3 2 1 5 5 O 1.35715 * 119.90999 * 179.97438 * 4 3 2 6 6 C 1.39017 * 120.18028 * 0.02562 * 4 3 2 7 7 C 1.50701 * 119.95788 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46989 * 120.01904 * 7 6 4 9 9 C 1.52998 * 109.46797 * 240.01846 * 7 6 4 10 10 C 1.37680 * 120.08789 * 359.97438 * 6 4 3 11 11 C 1.39710 * 120.04757 * 179.97438 * 2 1 3 12 12 C 1.47610 * 120.08635 * 0.02562 * 11 2 1 13 13 O 1.21583 * 119.99601 * 6.29057 * 12 11 2 14 14 N 1.34772 * 119.99909 * 186.28784 * 12 11 2 15 15 C 1.46499 * 119.99953 * 180.02562 * 14 12 11 16 16 H 1.09004 * 109.47101 * 324.99581 * 15 14 12 17 17 C 1.52997 * 109.47652 * 84.99693 * 15 14 12 18 18 C 1.50703 * 109.47184 * 205.00201 * 15 14 12 19 19 H 1.08001 * 119.99727 * 359.97438 * 18 15 14 20 20 C 1.37871 * 120.00248 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99822 * 359.97438 * 20 18 15 22 22 Si 1.86792 * 120.00327 * 179.97438 * 20 18 15 23 23 H 1.48505 * 109.46926 * 60.00170 * 22 20 18 24 24 H 1.48497 * 109.47585 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47182 * 300.00463 * 22 20 18 26 26 H 1.09003 * 109.47226 * 96.61271 * 1 2 3 27 27 H 1.08998 * 109.46911 * 216.60978 * 1 2 3 28 28 H 1.09002 * 109.46980 * 336.61262 * 1 2 3 29 29 H 1.07998 * 119.95520 * 359.70120 * 3 2 1 30 30 H 0.96698 * 113.99946 * 89.99965 * 5 4 3 31 31 H 1.09004 * 109.47012 * 0.02562 * 7 6 4 32 32 H 1.09005 * 109.46933 * 180.02562 * 8 7 6 33 33 H 1.08996 * 109.47380 * 299.99930 * 8 7 6 34 34 H 1.08992 * 109.47470 * 60.00103 * 8 7 6 35 35 H 1.08996 * 109.46947 * 60.00125 * 9 7 6 36 36 H 1.09005 * 109.46768 * 179.97438 * 9 7 6 37 37 H 1.08992 * 109.47243 * 299.99639 * 9 7 6 38 38 H 1.07995 * 120.04859 * 180.02562 * 10 6 4 39 39 H 0.96997 * 120.00315 * 359.97438 * 14 12 11 40 40 H 1.08994 * 109.47434 * 180.02562 * 17 15 14 41 41 H 1.09000 * 109.46899 * 300.00321 * 17 15 14 42 42 H 1.09004 * 109.46959 * 59.99801 * 17 15 14 43 43 H 0.97007 * 119.99668 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1923 0.0000 4 6 3.5863 1.1933 0.0005 5 8 4.2621 2.3702 0.0000 6 6 4.2860 -0.0079 0.0005 7 6 5.7930 -0.0009 0.0005 8 6 6.3063 -0.7202 1.2496 9 6 6.3063 -0.7194 -1.2489 10 6 3.6041 -1.2040 0.0005 11 6 2.2066 -1.2093 0.0005 12 6 1.4715 -2.4894 0.0005 13 8 0.2612 -2.4953 -0.1153 14 7 2.1420 -3.6515 0.1289 15 6 1.4125 -4.9219 0.1283 16 1 0.4496 -4.7882 0.6214 17 6 1.1877 -5.3804 -1.3139 18 6 2.2148 -5.9621 0.8669 19 1 3.1724 -5.7029 1.2936 20 6 1.7262 -7.2447 0.9978 21 7 0.5598 -7.5603 0.4786 22 14 2.7209 -8.5343 1.9126 23 1 2.9400 -8.0892 3.3124 24 1 1.9815 -9.8221 1.9122 25 1 4.0323 -8.7168 1.2403 26 1 -0.3634 -0.1183 -1.0208 27 1 -0.3633 -0.8249 0.6129 28 1 -0.3633 0.9433 0.4079 29 1 1.6565 2.1275 -0.0049 30 1 4.4576 2.7119 0.8832 31 1 6.1516 1.0285 0.0010 32 1 7.3964 -0.7148 1.2498 33 1 5.9407 -0.2084 2.1397 34 1 5.9478 -1.7495 1.2493 35 1 5.9406 -0.2069 -2.1387 36 1 7.3963 -0.7139 -1.2492 37 1 5.9478 -1.7487 -1.2492 38 1 4.1484 -2.1367 0.0010 39 1 3.1076 -3.6467 0.2209 40 1 0.6446 -6.3254 -1.3143 41 1 0.6074 -4.6280 -1.8480 42 1 2.1506 -5.5141 -1.8069 43 1 0.2162 -8.4628 0.5705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436875789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:10 Heat of formation + Delta-G solvation = -75.313214 kcal Electronic energy + Delta-G solvation = -23578.007286 eV Core-core repulsion = 20201.585499 eV Total energy + Delta-G solvation = -3376.421787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45422 -38.76689 -36.65970 -35.79192 -34.73175 -32.62515 -31.23734 -30.31816 -28.50260 -27.22808 -26.63504 -25.26049 -23.73057 -22.43048 -21.37770 -19.86955 -19.48989 -18.09808 -17.50655 -16.41555 -15.76214 -15.39529 -15.15147 -14.71509 -14.40563 -14.20670 -13.93734 -13.76638 -13.40989 -13.20281 -12.94699 -12.41210 -12.37080 -12.35562 -12.33688 -11.75281 -11.69809 -11.57458 -11.46843 -11.09886 -11.06764 -10.95550 -10.83804 -10.73028 -10.35279 -10.30192 -10.23882 -9.06717 -8.92137 -8.75849 -8.56381 -8.42872 -7.87398 -6.13190 -4.22649 0.91568 1.32919 3.15969 3.24822 3.30229 3.31220 3.98012 4.06265 4.14828 4.36946 4.52418 4.68950 4.96470 5.09106 5.12884 5.19083 5.25339 5.32007 5.51120 5.53928 5.61937 5.73237 5.75760 5.82397 5.92616 5.97669 6.06371 6.10678 6.14347 6.25808 6.38286 6.48152 6.69907 6.78195 6.85327 6.97385 7.14179 7.44712 7.50645 7.55306 7.68399 7.90535 8.13803 8.63805 8.76300 9.08931 9.44791 10.92736 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.004462 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.934030 B = 6274.390701 C = 7449.540820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.015 4.015 3 C -0.157 4.157 4 C 0.124 3.876 5 O -0.496 6.496 6 C -0.118 4.118 7 C -0.052 4.052 8 C -0.147 4.147 9 C -0.145 4.145 10 C -0.064 4.064 11 C -0.133 4.133 12 C 0.542 3.458 13 O -0.545 6.545 14 N -0.702 5.702 15 C 0.265 3.735 16 H 0.050 0.950 17 C -0.147 4.147 18 C -0.535 4.535 19 H 0.060 0.940 20 C 0.067 3.933 21 N -0.883 5.883 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.130 0.870 30 H 0.388 0.612 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.131 0.869 39 H 0.387 0.613 40 H 0.090 0.910 41 H 0.015 0.985 42 H 0.026 0.974 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.389 16.560 0.241 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.017 4.017 3 C -0.175 4.175 4 C 0.079 3.921 5 O -0.306 6.306 6 C -0.119 4.119 7 C -0.071 4.071 8 C -0.204 4.204 9 C -0.202 4.202 10 C -0.083 4.083 11 C -0.136 4.136 12 C 0.328 3.672 13 O -0.425 6.425 14 N -0.349 5.349 15 C 0.163 3.837 16 H 0.068 0.932 17 C -0.205 4.205 18 C -0.573 4.573 19 H 0.078 0.922 20 C -0.136 4.136 21 N -0.520 5.520 22 Si 0.729 3.271 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 H 0.093 0.907 27 H 0.119 0.881 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.244 0.756 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.149 0.851 39 H 0.220 0.780 40 H 0.109 0.891 41 H 0.034 0.966 42 H 0.045 0.955 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.353 16.265 -0.469 18.290 hybrid contribution 1.103 -0.629 0.961 1.592 sum 9.455 15.636 0.492 18.279 Atomic orbital electron populations 1.21088 0.89771 1.02805 1.03901 1.19908 0.97005 0.90890 0.93849 1.21215 0.93117 0.98252 1.04920 1.18412 0.89596 0.84661 0.99439 1.84746 1.76535 1.35975 1.33341 1.20008 0.96008 0.92233 1.03610 1.19998 0.90117 1.01007 0.95957 1.21899 1.00755 1.00956 0.96786 1.21856 1.00639 1.00722 0.96964 1.21075 0.92863 0.97751 0.96596 1.20182 0.93412 0.94365 1.05622 1.18120 0.87335 0.83732 0.77971 1.90677 1.13655 1.87159 1.51055 1.46504 1.10505 1.07097 1.70837 1.18769 0.93238 0.77849 0.93821 0.93189 1.22075 0.99219 1.02121 0.97118 1.21163 1.05363 0.94893 1.35890 0.92186 1.24874 0.95052 0.98280 0.95404 1.69896 1.17825 1.20251 1.44054 0.86510 0.79941 0.80469 0.80188 1.20175 1.21106 1.20162 0.90673 0.88056 0.92937 0.85167 0.75617 0.89910 0.92349 0.92718 0.92069 0.92556 0.92387 0.92196 0.85142 0.78002 0.89106 0.96580 0.95494 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.72 36.01 0.31 -1.47 16 2 C -0.02 -0.23 5.91 -104.26 -0.62 -0.85 16 3 C -0.16 -2.00 9.60 -39.50 -0.38 -2.38 16 4 C 0.12 1.50 6.68 -39.02 -0.26 1.23 16 5 O -0.50 -4.91 12.24 -18.85 -0.23 -5.14 16 6 C -0.12 -1.45 4.79 -104.54 -0.50 -1.95 16 7 C -0.05 -0.53 3.05 -91.77 -0.28 -0.81 16 8 C -0.15 -1.35 9.00 37.16 0.33 -1.02 16 9 C -0.14 -1.44 9.00 37.16 0.33 -1.10 16 10 C -0.06 -0.90 8.17 -39.22 -0.32 -1.22 16 11 C -0.13 -2.21 5.88 -104.96 -0.62 -2.82 16 12 C 0.54 11.14 7.66 -12.44 -0.10 11.04 16 13 O -0.54 -12.72 13.00 5.29 0.07 -12.65 16 14 N -0.70 -14.83 5.02 -55.95 -0.28 -15.11 16 15 C 0.26 6.73 2.56 -69.08 -0.18 6.55 16 16 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 17 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 18 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 21 N -0.88 -24.73 11.32 55.43 0.63 -24.10 16 22 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.10 1.78 5.85 -51.93 -0.30 1.48 16 28 H 0.05 0.63 8.04 -51.93 -0.42 0.21 16 29 H 0.13 1.40 8.05 -52.49 -0.42 0.98 16 30 H 0.39 2.03 9.06 45.56 0.41 2.45 16 31 H 0.08 0.78 6.98 -51.93 -0.36 0.42 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.61 7.38 -51.93 -0.38 0.22 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 38 H 0.13 1.71 5.47 -52.49 -0.29 1.42 16 39 H 0.39 7.13 6.60 -40.82 -0.27 6.86 16 40 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -30.70 348.28 -7.53 -38.23 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.63 Total: 8.83 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.31 Total: -10.79 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.35 Total: -39.20 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.16 Total: -17.79 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.70 -7.53 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436875789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.084 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds