Wall clock time and date at job start Tue Mar 31 2020 06:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37729 * 120.04215 * 2 1 4 4 C 1.38970 * 120.08518 * 179.97438 * 3 2 1 5 5 O 1.35715 * 119.90999 * 179.97438 * 4 3 2 6 6 C 1.39017 * 120.18028 * 0.02562 * 4 3 2 7 7 C 1.50701 * 119.95788 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46989 * 120.01904 * 7 6 4 9 9 C 1.52998 * 109.46797 * 240.01846 * 7 6 4 10 10 C 1.37680 * 120.08789 * 359.97438 * 6 4 3 11 11 C 1.39710 * 120.04757 * 179.97438 * 2 1 3 12 12 C 1.47610 * 120.08635 * 0.02562 * 11 2 1 13 13 O 1.21583 * 119.99601 * 6.29057 * 12 11 2 14 14 N 1.34772 * 119.99909 * 186.28784 * 12 11 2 15 15 C 1.46499 * 119.99953 * 180.02562 * 14 12 11 16 16 H 1.09004 * 109.47101 * 324.99581 * 15 14 12 17 17 C 1.52997 * 109.47652 * 84.99693 * 15 14 12 18 18 C 1.50703 * 109.47184 * 205.00201 * 15 14 12 19 19 H 1.08001 * 119.99727 * 359.97438 * 18 15 14 20 20 C 1.37871 * 120.00248 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99822 * 359.97438 * 20 18 15 22 22 Si 1.86792 * 120.00327 * 179.97438 * 20 18 15 23 23 H 1.48505 * 109.46926 * 60.00170 * 22 20 18 24 24 H 1.48497 * 109.47585 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47182 * 300.00463 * 22 20 18 26 26 H 1.09003 * 109.47226 * 96.61271 * 1 2 3 27 27 H 1.08998 * 109.46911 * 216.60978 * 1 2 3 28 28 H 1.09002 * 109.46980 * 336.61262 * 1 2 3 29 29 H 1.07998 * 119.95520 * 359.70120 * 3 2 1 30 30 H 0.96698 * 113.99946 * 89.99965 * 5 4 3 31 31 H 1.09004 * 109.47012 * 0.02562 * 7 6 4 32 32 H 1.09005 * 109.46933 * 180.02562 * 8 7 6 33 33 H 1.08996 * 109.47380 * 299.99930 * 8 7 6 34 34 H 1.08992 * 109.47470 * 60.00103 * 8 7 6 35 35 H 1.08996 * 109.46947 * 60.00125 * 9 7 6 36 36 H 1.09005 * 109.46768 * 179.97438 * 9 7 6 37 37 H 1.08992 * 109.47243 * 299.99639 * 9 7 6 38 38 H 1.07995 * 120.04859 * 180.02562 * 10 6 4 39 39 H 0.96997 * 120.00315 * 359.97438 * 14 12 11 40 40 H 1.08994 * 109.47434 * 180.02562 * 17 15 14 41 41 H 1.09000 * 109.46899 * 300.00321 * 17 15 14 42 42 H 1.09004 * 109.46959 * 59.99801 * 17 15 14 43 43 H 0.97007 * 119.99668 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1923 0.0000 4 6 3.5863 1.1933 0.0005 5 8 4.2621 2.3702 0.0000 6 6 4.2860 -0.0079 0.0005 7 6 5.7930 -0.0009 0.0005 8 6 6.3063 -0.7202 1.2496 9 6 6.3063 -0.7194 -1.2489 10 6 3.6041 -1.2040 0.0005 11 6 2.2066 -1.2093 0.0005 12 6 1.4715 -2.4894 0.0005 13 8 0.2612 -2.4953 -0.1153 14 7 2.1420 -3.6515 0.1289 15 6 1.4125 -4.9219 0.1283 16 1 0.4496 -4.7882 0.6214 17 6 1.1877 -5.3804 -1.3139 18 6 2.2148 -5.9621 0.8669 19 1 3.1724 -5.7029 1.2936 20 6 1.7262 -7.2447 0.9978 21 7 0.5598 -7.5603 0.4786 22 14 2.7209 -8.5343 1.9126 23 1 2.9400 -8.0892 3.3124 24 1 1.9815 -9.8221 1.9122 25 1 4.0323 -8.7168 1.2403 26 1 -0.3634 -0.1183 -1.0208 27 1 -0.3633 -0.8249 0.6129 28 1 -0.3633 0.9433 0.4079 29 1 1.6565 2.1275 -0.0049 30 1 4.4576 2.7119 0.8832 31 1 6.1516 1.0285 0.0010 32 1 7.3964 -0.7148 1.2498 33 1 5.9407 -0.2084 2.1397 34 1 5.9478 -1.7495 1.2493 35 1 5.9406 -0.2069 -2.1387 36 1 7.3963 -0.7139 -1.2492 37 1 5.9478 -1.7487 -1.2492 38 1 4.1484 -2.1367 0.0010 39 1 3.1076 -3.6467 0.2209 40 1 0.6446 -6.3254 -1.3143 41 1 0.6074 -4.6280 -1.8480 42 1 2.1506 -5.5141 -1.8069 43 1 0.2162 -8.4628 0.5705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436875789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:09 Heat of formation + Delta-G solvation = -95.190055 kcal Electronic energy + Delta-G solvation = -23578.869210 eV Core-core repulsion = 20201.585499 eV Total energy + Delta-G solvation = -3377.283711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61725 -40.17857 -37.68129 -36.99748 -36.32193 -34.47113 -32.48424 -31.62479 -30.13945 -27.95591 -27.76420 -27.33565 -24.96314 -23.64628 -22.77573 -21.34180 -20.84021 -19.21599 -18.83910 -17.89156 -17.33389 -16.79173 -16.42155 -16.17116 -15.89317 -15.51712 -14.88868 -14.77631 -14.73889 -14.42644 -14.30375 -14.04836 -13.67551 -13.55256 -13.49123 -13.10391 -12.96478 -12.87204 -12.79499 -12.70291 -12.50889 -12.36641 -12.26487 -12.13088 -11.93961 -11.62215 -11.26498 -11.12112 -10.63069 -10.49793 -9.89318 -9.76904 -9.39712 -8.17732 -6.35559 -0.21752 0.28298 1.44953 1.47091 1.54955 1.87569 2.33758 2.58830 2.73590 3.12715 3.18871 3.62442 3.72055 3.87229 4.01479 4.21585 4.33373 4.41163 4.47592 4.59952 4.71193 4.80961 4.82320 4.83987 4.90468 4.92032 4.98591 5.02821 5.03736 5.07764 5.20916 5.29535 5.31253 5.39445 5.40967 5.55241 5.58393 5.64172 5.67494 5.76744 5.89914 6.08370 6.70738 6.82477 6.92173 7.30702 7.49772 8.88490 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.004462 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.934030 B = 6274.390701 C = 7449.540820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.026 4.026 3 C -0.154 4.154 4 C 0.143 3.857 5 O -0.495 6.495 6 C -0.118 4.118 7 C -0.048 4.048 8 C -0.146 4.146 9 C -0.146 4.146 10 C -0.061 4.061 11 C -0.160 4.160 12 C 0.538 3.462 13 O -0.582 6.582 14 N -0.700 5.700 15 C 0.272 3.728 16 H 0.001 0.999 17 C -0.133 4.133 18 C -0.548 4.548 19 H 0.072 0.928 20 C 0.016 3.984 21 N -0.917 5.917 22 Si 0.973 3.027 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.264 1.264 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.413 0.587 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.135 0.865 39 H 0.400 0.600 40 H 0.068 0.932 41 H 0.011 0.989 42 H 0.039 0.961 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.347 18.425 0.852 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.027 4.027 3 C -0.172 4.172 4 C 0.097 3.903 5 O -0.309 6.309 6 C -0.118 4.118 7 C -0.066 4.066 8 C -0.203 4.203 9 C -0.203 4.203 10 C -0.080 4.080 11 C -0.163 4.163 12 C 0.327 3.673 13 O -0.465 6.465 14 N -0.349 5.349 15 C 0.169 3.831 16 H 0.019 0.981 17 C -0.192 4.192 18 C -0.586 4.586 19 H 0.090 0.910 20 C -0.184 4.184 21 N -0.555 5.555 22 Si 0.797 3.203 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.188 1.188 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.173 0.827 30 H 0.274 0.726 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.153 0.847 39 H 0.236 0.764 40 H 0.087 0.913 41 H 0.030 0.970 42 H 0.058 0.942 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.352 18.170 0.159 21.426 hybrid contribution 0.208 -1.045 0.765 1.312 sum 11.561 17.125 0.924 20.683 Atomic orbital electron populations 1.20972 0.90215 1.03078 1.02836 1.19996 0.96965 0.91348 0.94418 1.21400 0.93636 0.98079 1.04096 1.18447 0.89436 0.85371 0.97014 1.84689 1.75962 1.34710 1.35499 1.20265 0.97397 0.91602 1.02581 1.20044 0.88270 1.01960 0.96331 1.21898 1.01790 1.00182 0.96448 1.21877 1.01801 1.00066 0.96602 1.21107 0.91707 0.98953 0.96247 1.19892 0.94368 0.92591 1.09480 1.18774 0.87134 0.84818 0.76570 1.90660 1.15477 1.87866 1.52535 1.46240 1.11022 1.06159 1.71496 1.18372 0.91654 0.79734 0.93385 0.98080 1.21894 0.99360 1.00747 0.97151 1.21479 1.05819 0.95270 1.36059 0.90985 1.25790 0.96004 1.00500 0.96118 1.70050 1.19484 1.20723 1.45215 0.85390 0.78631 0.77349 0.78931 1.19568 1.21114 1.18822 0.91621 0.91417 0.89746 0.82667 0.72624 0.88503 0.90747 0.92331 0.93178 0.93281 0.90631 0.93073 0.84725 0.76382 0.91291 0.97006 0.94219 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.48 8.72 71.24 0.62 -2.86 16 2 C -0.03 -0.78 5.91 -19.63 -0.12 -0.89 16 3 C -0.15 -3.53 9.60 22.32 0.21 -3.31 16 4 C 0.14 2.97 6.68 22.63 0.15 3.13 16 5 O -0.49 -7.57 12.24 -90.37 -1.11 -8.67 16 6 C -0.12 -2.60 4.79 -19.81 -0.09 -2.70 16 7 C -0.05 -0.81 3.05 -11.54 -0.04 -0.85 16 8 C -0.15 -2.26 9.00 71.98 0.65 -1.61 16 9 C -0.15 -2.54 9.00 71.98 0.65 -1.89 16 10 C -0.06 -1.67 8.17 22.50 0.18 -1.49 16 11 C -0.16 -5.38 5.88 -20.08 -0.12 -5.50 16 12 C 0.54 23.14 7.66 86.72 0.66 23.81 16 13 O -0.58 -29.04 13.00 -3.98 -0.05 -29.09 16 14 N -0.70 -30.64 5.02 -449.20 -2.25 -32.89 16 15 C 0.27 14.42 2.56 44.25 0.11 14.53 16 16 H 0.00 0.08 7.58 -2.38 -0.02 0.06 16 17 C -0.13 -6.89 9.26 71.98 0.67 -6.23 16 18 C -0.55 -29.29 8.73 25.60 0.22 -29.06 16 19 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 20 C 0.02 0.87 5.30 84.65 0.45 1.32 16 21 N -0.92 -52.78 11.32 21.45 0.24 -52.54 16 22 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.07 2.53 5.85 -2.39 -0.01 2.52 16 28 H 0.08 1.93 8.04 -2.39 -0.02 1.91 16 29 H 0.16 2.75 8.05 -2.91 -0.02 2.73 16 30 H 0.41 2.26 9.06 -74.06 -0.67 1.59 16 31 H 0.10 1.41 6.98 -2.38 -0.02 1.39 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 0.89 7.38 -2.39 -0.02 0.87 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.05 0.97 7.38 -2.39 -0.02 0.95 16 38 H 0.14 3.45 5.47 -2.91 -0.02 3.43 16 39 H 0.40 14.98 6.60 -92.71 -0.61 14.37 16 40 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 41 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.27 14.50 8.31 -92.70 -0.77 13.72 16 Total: -1.00 -68.79 348.28 2.83 -65.97 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.25 Total: 26.87 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 4.22 Total: -13.61 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -2.01 Total: -85.43 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -1.16 Total: -37.76 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -68.79 2.83 -65.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436875789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.224 kcal (2) G-P(sol) polarization free energy of solvation -68.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds