Wall clock time and date at job start Tue Mar 31 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 113.99908 * 2 1 4 4 C 1.53004 * 109.47360 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46890 * 64.99845 * 4 3 2 6 6 C 1.37099 * 120.00152 * 89.99815 * 5 4 3 7 7 H 1.07993 * 120.00385 * 305.21750 * 6 5 4 8 8 C 1.38958 * 119.99609 * 125.20935 * 6 5 4 9 9 N 1.31401 * 120.00135 * 335.88552 * 8 6 5 10 10 Si 1.86802 * 119.99468 * 155.88523 * 8 6 5 11 11 H 1.48501 * 109.47303 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47111 * 120.00402 * 10 8 6 13 13 H 1.48504 * 109.46641 * 239.99782 * 10 8 6 14 14 C 1.34780 * 120.00253 * 270.00368 * 5 4 3 15 15 O 1.21294 * 119.99478 * 4.71366 * 14 5 4 16 16 C 1.50694 * 120.00106 * 184.71022 * 14 5 4 17 17 H 1.09003 * 109.47278 * 47.59571 * 16 14 5 18 18 C 1.52998 * 109.47448 * 287.58971 * 16 14 5 19 19 C 1.50709 * 109.47060 * 167.58765 * 16 14 5 20 20 C 1.38251 * 119.99886 * 60.00111 * 19 16 14 21 21 C 1.38209 * 120.00362 * 179.97438 * 20 19 16 22 22 C 1.38262 * 119.99518 * 0.02562 * 21 20 19 23 23 C 1.38206 * 120.00252 * 359.97438 * 22 21 20 24 24 C 1.50703 * 120.00212 * 180.02562 * 23 22 21 25 25 C 1.38215 * 119.99832 * 239.72938 * 19 16 14 26 26 H 1.08995 * 109.47422 * 300.00108 * 1 2 3 27 27 H 1.08995 * 109.47327 * 60.00493 * 1 2 3 28 28 H 1.09000 * 109.46869 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47354 * 59.99786 * 3 2 1 30 30 H 1.09003 * 109.47600 * 299.99842 * 3 2 1 31 31 H 1.08997 * 109.46839 * 305.00102 * 4 3 2 32 32 H 1.08993 * 109.47540 * 184.99662 * 4 3 2 33 33 H 0.96997 * 120.00288 * 175.38567 * 9 8 6 34 34 H 1.08995 * 109.46908 * 65.78659 * 18 16 14 35 35 H 1.09000 * 109.47092 * 185.78627 * 18 16 14 36 36 H 1.08996 * 109.46724 * 305.78728 * 18 16 14 37 37 H 1.08008 * 119.99736 * 0.02562 * 20 19 16 38 38 H 1.07993 * 120.00122 * 180.02562 * 21 20 19 39 39 H 1.08001 * 119.99368 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.46806 * 89.99955 * 24 23 22 41 41 H 1.08994 * 109.47198 * 210.00144 * 24 23 22 42 42 H 1.08996 * 109.47209 * 330.00400 * 24 23 22 43 43 H 1.07995 * 120.00255 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2682 1.3461 -2.3385 7 1 3.5352 2.0452 -2.7130 8 6 5.5070 1.2394 -2.9589 9 7 6.5417 0.7875 -2.2867 10 14 5.7013 1.7386 -4.7485 11 1 4.3955 2.2103 -5.2754 12 1 6.7014 2.8314 -4.8518 13 1 6.1614 0.5700 -5.5410 14 6 4.0959 -0.7760 -1.3332 15 8 3.7568 -1.4734 -0.4005 16 6 4.6503 -1.4078 -2.5839 17 1 5.5611 -0.8876 -2.8808 18 6 3.6165 -1.3076 -3.7073 19 6 4.9641 -2.8576 -2.3178 20 6 3.9589 -3.7215 -1.9246 21 6 4.2465 -5.0512 -1.6810 22 6 5.5396 -5.5173 -1.8301 23 6 6.5445 -4.6537 -2.2231 24 6 7.9539 -5.1619 -2.3861 25 6 6.2557 -3.3247 -2.4722 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8507 0.5686 0.8427 32 1 3.9784 2.1765 0.0901 33 1 7.3898 0.6497 -2.7367 34 1 3.4659 -0.2606 -3.9701 35 1 3.9745 -1.8534 -4.5803 36 1 2.6728 -1.7374 -3.3719 37 1 2.9487 -3.3574 -1.8086 38 1 3.4612 -5.7261 -1.3743 39 1 5.7642 -6.5565 -1.6401 40 1 8.0996 -5.5067 -3.4099 41 1 8.6573 -4.3579 -2.1699 42 1 8.1240 -5.9887 -1.6966 43 1 7.0402 -2.6508 -2.7832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:34 Heat of formation + Delta-G solvation = -53.926814 kcal Electronic energy + Delta-G solvation = -24593.731169 eV Core-core repulsion = 21218.236766 eV Total energy + Delta-G solvation = -3375.494403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.38444 -38.14869 -36.94477 -34.53783 -33.63212 -32.00876 -31.46404 -29.36992 -28.46970 -26.31511 -25.79800 -24.88765 -23.61087 -22.10065 -21.36361 -20.12262 -18.90076 -16.68328 -16.00277 -15.74958 -15.61517 -15.13269 -14.82464 -14.64363 -14.36332 -14.18036 -13.76904 -13.38615 -13.28037 -12.83900 -12.58704 -12.39998 -11.99577 -11.92858 -11.84130 -11.77602 -11.38444 -11.28109 -11.12829 -11.05861 -10.97466 -10.70586 -10.62855 -10.42075 -10.28601 -10.11523 -9.97495 -9.05535 -8.67218 -8.24561 -7.93449 -7.86516 -7.24735 -6.40370 -4.23252 2.03561 2.05165 3.08865 3.20844 3.22541 4.05930 4.24981 4.41173 4.48286 4.85172 4.96657 5.31680 5.37135 5.55430 5.60799 5.68249 5.70968 5.81801 5.86234 5.89705 5.95511 6.00963 6.08664 6.12429 6.17030 6.19541 6.25852 6.37833 6.44291 6.49162 6.67608 6.74559 6.77914 6.93374 7.02446 7.10788 7.13440 7.21104 7.39971 7.54748 7.70562 7.82333 8.03924 8.67492 8.93712 9.68718 10.14738 10.59653 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011999 B = 0.007552 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.962867 B = 3706.563639 C = 5306.653642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.050 3.950 4 C 0.118 3.882 5 N -0.457 5.457 6 C -0.338 4.338 7 H 0.079 0.921 8 C 0.055 3.945 9 N -0.848 5.848 10 Si 0.888 3.112 11 H -0.264 1.264 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.531 3.469 15 O -0.580 6.580 16 C -0.079 4.079 17 H 0.128 0.872 18 C -0.130 4.130 19 C -0.043 4.043 20 C -0.084 4.084 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.101 4.101 24 C -0.108 4.108 25 C -0.113 4.113 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.269 0.731 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 -4.530 -1.572 5.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C -0.028 4.028 4 C -0.006 4.006 5 N -0.178 5.178 6 C -0.466 4.466 7 H 0.096 0.904 8 C -0.151 4.151 9 N -0.484 5.484 10 Si 0.713 3.287 11 H -0.188 1.188 12 H -0.207 1.207 13 H -0.198 1.198 14 C 0.320 3.680 15 O -0.462 6.462 16 C -0.100 4.100 17 H 0.145 0.855 18 C -0.187 4.187 19 C -0.043 4.043 20 C -0.102 4.102 21 C -0.147 4.147 22 C -0.153 4.153 23 C -0.101 4.101 24 C -0.164 4.164 25 C -0.131 4.131 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.222 -4.996 -1.080 6.042 hybrid contribution 0.035 0.676 -0.825 1.067 sum -3.187 -4.320 -1.905 5.696 Atomic orbital electron populations 1.22634 0.83378 1.01770 0.98757 1.88205 1.17383 1.27287 1.95006 1.23040 0.96334 0.84765 0.98646 1.21356 0.90383 0.98603 0.90281 1.43087 1.61399 1.03864 1.09450 1.19177 0.97939 1.23361 1.06108 0.90382 1.25506 0.94429 0.95844 0.99366 1.70129 1.00515 1.42676 1.35059 0.86522 0.78988 0.78944 0.84288 1.18756 1.20668 1.19783 1.19947 0.77913 0.82275 0.87881 1.90543 1.52790 1.62161 1.40726 1.20552 1.02989 0.90986 0.95474 0.85494 1.21649 0.97539 1.03109 0.96451 1.19792 0.92894 0.95290 0.96368 1.20983 0.99654 0.92429 0.97115 1.21008 0.96270 0.95871 1.01524 1.20801 0.93102 0.98641 1.02754 1.19744 0.95437 0.93931 1.01026 1.20709 0.93358 1.00986 1.01385 1.20944 0.96332 0.94703 1.01138 0.95188 0.94972 0.90480 0.94444 0.93679 0.91566 0.90279 0.92045 0.90371 0.93763 0.93575 0.86304 0.86991 0.87191 0.91882 0.91824 0.92175 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.51 9.30 -47.95 -0.45 -7.96 16 3 C 0.05 0.96 6.28 37.16 0.23 1.19 16 4 C 0.12 2.60 5.82 -4.04 -0.02 2.58 16 5 N -0.46 -11.30 2.38 -114.81 -0.27 -11.58 16 6 C -0.34 -8.27 7.20 -14.93 -0.11 -8.38 16 7 H 0.08 1.87 7.94 -52.49 -0.42 1.45 16 8 C 0.05 1.33 3.05 -17.47 -0.05 1.28 16 9 N -0.85 -21.79 11.75 55.50 0.65 -21.14 16 10 Si 0.89 18.65 28.78 -169.99 -4.89 13.76 16 11 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 14 C 0.53 13.57 6.19 -10.99 -0.07 13.51 16 15 O -0.58 -15.94 13.32 -7.18 -0.10 -16.03 16 16 C -0.08 -1.83 2.00 -92.92 -0.19 -2.02 16 17 H 0.13 3.12 4.08 -51.93 -0.21 2.91 16 18 C -0.13 -2.69 8.63 37.16 0.32 -2.37 16 19 C -0.04 -0.94 4.52 -104.62 -0.47 -1.41 16 20 C -0.08 -1.72 7.90 -39.59 -0.31 -2.04 16 21 C -0.13 -2.29 10.05 -39.58 -0.40 -2.68 16 22 C -0.13 -2.25 9.70 -39.58 -0.38 -2.63 16 23 C -0.10 -1.77 5.88 -104.62 -0.62 -2.38 16 24 C -0.11 -1.46 10.01 36.01 0.36 -1.10 16 25 C -0.11 -2.27 9.33 -39.58 -0.37 -2.64 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.56 7.49 -51.93 -0.39 1.17 16 32 H 0.08 1.64 8.04 -51.93 -0.42 1.22 16 33 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.08 1.65 5.47 -51.93 -0.28 1.37 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.92 7.60 -51.93 -0.39 0.52 16 37 H 0.12 2.52 7.29 -52.48 -0.38 2.14 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 42 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 43 H 0.12 2.30 7.95 -52.49 -0.42 1.89 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -29.58 347.86 -7.47 -37.05 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.69 Total: 8.14 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.96 Total: -7.49 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.38 Total: -32.72 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.54 Total: -23.99 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.89 Total: 13.76 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.58 -7.47 -37.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.874 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds