Wall clock time and date at job start Tue Mar 31 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 113.99908 * 2 1 4 4 C 1.53004 * 109.47360 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46890 * 64.99845 * 4 3 2 6 6 C 1.37099 * 120.00152 * 89.99815 * 5 4 3 7 7 H 1.07993 * 120.00385 * 305.21750 * 6 5 4 8 8 C 1.38958 * 119.99609 * 125.20935 * 6 5 4 9 9 N 1.31401 * 120.00135 * 335.88552 * 8 6 5 10 10 Si 1.86802 * 119.99468 * 155.88523 * 8 6 5 11 11 H 1.48501 * 109.47303 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47111 * 120.00402 * 10 8 6 13 13 H 1.48504 * 109.46641 * 239.99782 * 10 8 6 14 14 C 1.34780 * 120.00253 * 270.00368 * 5 4 3 15 15 O 1.21294 * 119.99478 * 4.71366 * 14 5 4 16 16 C 1.50694 * 120.00106 * 184.71022 * 14 5 4 17 17 H 1.09003 * 109.47278 * 47.59571 * 16 14 5 18 18 C 1.52998 * 109.47448 * 287.58971 * 16 14 5 19 19 C 1.50709 * 109.47060 * 167.58765 * 16 14 5 20 20 C 1.38251 * 119.99886 * 60.00111 * 19 16 14 21 21 C 1.38209 * 120.00362 * 179.97438 * 20 19 16 22 22 C 1.38262 * 119.99518 * 0.02562 * 21 20 19 23 23 C 1.38206 * 120.00252 * 359.97438 * 22 21 20 24 24 C 1.50703 * 120.00212 * 180.02562 * 23 22 21 25 25 C 1.38215 * 119.99832 * 239.72938 * 19 16 14 26 26 H 1.08995 * 109.47422 * 300.00108 * 1 2 3 27 27 H 1.08995 * 109.47327 * 60.00493 * 1 2 3 28 28 H 1.09000 * 109.46869 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47354 * 59.99786 * 3 2 1 30 30 H 1.09003 * 109.47600 * 299.99842 * 3 2 1 31 31 H 1.08997 * 109.46839 * 305.00102 * 4 3 2 32 32 H 1.08993 * 109.47540 * 184.99662 * 4 3 2 33 33 H 0.96997 * 120.00288 * 175.38567 * 9 8 6 34 34 H 1.08995 * 109.46908 * 65.78659 * 18 16 14 35 35 H 1.09000 * 109.47092 * 185.78627 * 18 16 14 36 36 H 1.08996 * 109.46724 * 305.78728 * 18 16 14 37 37 H 1.08008 * 119.99736 * 0.02562 * 20 19 16 38 38 H 1.07993 * 120.00122 * 180.02562 * 21 20 19 39 39 H 1.08001 * 119.99368 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.46806 * 89.99955 * 24 23 22 41 41 H 1.08994 * 109.47198 * 210.00144 * 24 23 22 42 42 H 1.08996 * 109.47209 * 330.00400 * 24 23 22 43 43 H 1.07995 * 120.00255 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2682 1.3461 -2.3385 7 1 3.5352 2.0452 -2.7130 8 6 5.5070 1.2394 -2.9589 9 7 6.5417 0.7875 -2.2867 10 14 5.7013 1.7386 -4.7485 11 1 4.3955 2.2103 -5.2754 12 1 6.7014 2.8314 -4.8518 13 1 6.1614 0.5700 -5.5410 14 6 4.0959 -0.7760 -1.3332 15 8 3.7568 -1.4734 -0.4005 16 6 4.6503 -1.4078 -2.5839 17 1 5.5611 -0.8876 -2.8808 18 6 3.6165 -1.3076 -3.7073 19 6 4.9641 -2.8576 -2.3178 20 6 3.9589 -3.7215 -1.9246 21 6 4.2465 -5.0512 -1.6810 22 6 5.5396 -5.5173 -1.8301 23 6 6.5445 -4.6537 -2.2231 24 6 7.9539 -5.1619 -2.3861 25 6 6.2557 -3.3247 -2.4722 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8507 0.5686 0.8427 32 1 3.9784 2.1765 0.0901 33 1 7.3898 0.6497 -2.7367 34 1 3.4659 -0.2606 -3.9701 35 1 3.9745 -1.8534 -4.5803 36 1 2.6728 -1.7374 -3.3719 37 1 2.9487 -3.3574 -1.8086 38 1 3.4612 -5.7261 -1.3743 39 1 5.7642 -6.5565 -1.6401 40 1 8.0996 -5.5067 -3.4099 41 1 8.6573 -4.3579 -2.1699 42 1 8.1240 -5.9887 -1.6966 43 1 7.0402 -2.6508 -2.7832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:33 Heat of formation + Delta-G solvation = -69.408746 kcal Electronic energy + Delta-G solvation = -24594.402516 eV Core-core repulsion = 21218.236766 eV Total energy + Delta-G solvation = -3376.165750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07378 -39.74501 -38.48363 -36.45060 -35.25277 -33.71306 -32.96437 -30.98184 -30.04576 -27.58695 -27.18175 -26.76023 -25.27780 -23.69539 -22.82256 -21.79865 -20.64761 -18.47814 -17.64897 -17.26171 -17.14908 -16.89537 -16.34402 -16.28342 -15.95076 -15.75131 -15.32018 -14.96842 -14.66264 -14.32335 -14.25509 -13.84623 -13.59877 -13.48838 -13.36011 -13.06273 -12.99368 -12.89998 -12.79920 -12.62565 -12.51054 -12.39185 -12.20886 -12.02925 -11.87507 -11.70264 -11.55209 -10.56237 -10.49770 -9.99213 -9.55707 -9.32779 -9.15077 -8.28160 -6.17106 0.57857 0.60150 1.40833 1.48142 1.57501 2.28282 2.38333 2.89386 2.96504 3.06747 3.25141 3.95127 4.03770 4.14300 4.26597 4.32354 4.37168 4.40503 4.53487 4.54474 4.57355 4.59343 4.62244 4.71014 4.74391 4.77314 4.83459 4.86633 4.92103 4.99944 5.05186 5.15075 5.28509 5.29432 5.36008 5.46216 5.50540 5.68919 5.76087 5.96922 6.14308 6.26850 6.43894 6.76480 7.04946 7.76425 8.24163 8.73055 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011999 B = 0.007552 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.962867 B = 3706.563639 C = 5306.653642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.060 3.940 4 C 0.110 3.890 5 N -0.464 5.464 6 C -0.350 4.350 7 H 0.082 0.918 8 C 0.028 3.972 9 N -0.881 5.881 10 Si 0.942 3.058 11 H -0.252 1.252 12 H -0.281 1.281 13 H -0.269 1.269 14 C 0.518 3.482 15 O -0.610 6.610 16 C -0.077 4.077 17 H 0.112 0.888 18 C -0.122 4.122 19 C -0.070 4.070 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.130 4.130 23 C -0.099 4.099 24 C -0.106 4.106 25 C -0.136 4.136 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.271 0.729 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.101 0.899 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 -5.719 -2.398 7.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.018 4.018 4 C -0.013 4.013 5 N -0.185 5.185 6 C -0.478 4.478 7 H 0.100 0.900 8 C -0.177 4.177 9 N -0.517 5.517 10 Si 0.765 3.235 11 H -0.175 1.175 12 H -0.207 1.207 13 H -0.194 1.194 14 C 0.308 3.692 15 O -0.495 6.495 16 C -0.098 4.098 17 H 0.129 0.871 18 C -0.179 4.179 19 C -0.070 4.070 20 C -0.123 4.123 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.099 4.099 24 C -0.162 4.162 25 C -0.155 4.155 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.119 0.881 38 H 0.158 0.842 39 H 0.168 0.832 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.389 -6.158 -1.909 7.283 hybrid contribution 0.080 1.018 -0.487 1.131 sum -3.309 -5.139 -2.396 6.565 Atomic orbital electron populations 1.22832 0.80779 1.02871 1.00397 1.88147 1.20355 1.28177 1.95349 1.22890 0.93911 0.84707 1.00254 1.21498 0.93019 0.98181 0.88631 1.43300 1.60973 1.03949 1.10231 1.19373 0.98285 1.23534 1.06565 0.90002 1.26118 0.93783 0.95394 1.02358 1.70196 1.01078 1.43756 1.36690 0.85679 0.79284 0.78589 0.79946 1.17543 1.20655 1.19405 1.20447 0.77786 0.82522 0.88440 1.90495 1.54286 1.62789 1.41883 1.20474 1.02466 0.91925 0.94972 0.87067 1.21574 0.97054 1.02859 0.96407 1.19831 0.94107 0.94742 0.98334 1.20932 0.98641 0.93881 0.98857 1.21360 0.97888 0.94969 1.00242 1.21254 0.92137 1.00386 1.00987 1.20198 0.97746 0.92804 0.99188 1.20777 0.90609 1.01576 1.03242 1.21037 0.95513 0.96260 1.02645 0.92800 0.93914 0.89783 0.91193 0.93408 0.93968 0.89460 0.91873 0.91025 0.91938 0.93638 0.88092 0.84155 0.83190 0.89925 0.92128 0.89817 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.07 16 2 O -0.40 -16.78 9.30 -136.82 -1.27 -18.06 16 3 C 0.06 2.28 6.28 71.98 0.45 2.73 16 4 C 0.11 5.01 5.82 86.38 0.50 5.51 16 5 N -0.46 -23.61 2.38 -635.54 -1.51 -25.13 16 6 C -0.35 -17.37 7.20 84.04 0.60 -16.77 16 7 H 0.08 3.93 7.94 -2.91 -0.02 3.91 16 8 C 0.03 1.35 3.05 84.93 0.26 1.61 16 9 N -0.88 -46.30 11.75 21.66 0.25 -46.04 16 10 Si 0.94 38.07 28.78 68.60 1.97 40.05 16 11 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 12 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 13 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 14 C 0.52 27.48 6.19 87.65 0.54 28.02 16 15 O -0.61 -34.96 13.32 9.09 0.12 -34.83 16 16 C -0.08 -3.69 2.00 -12.29 -0.02 -3.71 16 17 H 0.11 5.65 4.08 -2.39 -0.01 5.64 16 18 C -0.12 -5.11 8.63 71.98 0.62 -4.48 16 19 C -0.07 -3.11 4.52 -19.86 -0.09 -3.20 16 20 C -0.10 -4.38 7.90 22.27 0.18 -4.20 16 21 C -0.13 -4.30 10.05 22.27 0.22 -4.08 16 22 C -0.13 -3.95 9.70 22.27 0.22 -3.74 16 23 C -0.10 -3.28 5.88 -19.87 -0.12 -3.40 16 24 C -0.11 -2.56 10.01 71.24 0.71 -1.85 16 25 C -0.14 -5.54 9.33 22.27 0.21 -5.33 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 2.08 7.49 -2.39 -0.02 2.06 16 32 H 0.09 3.69 8.04 -2.39 -0.02 3.68 16 33 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 34 H 0.07 3.04 5.47 -2.39 -0.01 3.03 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.04 1.86 7.60 -2.39 -0.02 1.84 16 37 H 0.10 4.46 7.29 -2.91 -0.02 4.44 16 38 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 39 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.51 8.09 -2.39 -0.02 1.49 16 42 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 43 H 0.11 4.41 7.95 -2.91 -0.02 4.39 16 Total: -1.00 -65.73 347.86 6.08 -59.65 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 0.98 Total: 35.18 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 5.54 Total: -10.82 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -1.26 Total: -71.17 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.15 Total: -52.89 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.97 Total: 40.05 kcal Total: -65.73 6.08 -59.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.757 kcal (2) G-P(sol) polarization free energy of solvation -65.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds