Wall clock time and date at job start Tue Mar 31 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99726 * 2 1 4 4 C 1.52993 * 109.47351 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46946 * 65.00492 * 4 3 2 6 6 C 1.37096 * 119.99448 * 270.00024 * 5 4 3 7 7 H 1.08001 * 120.00480 * 55.32954 * 6 5 4 8 8 C 1.38954 * 119.99811 * 235.31945 * 6 5 4 9 9 N 1.31415 * 120.00063 * 201.46689 * 8 6 5 10 10 Si 1.86795 * 119.99988 * 21.47701 * 8 6 5 11 11 H 1.48500 * 109.47508 * 92.62222 * 10 8 6 12 12 H 1.48496 * 109.47189 * 212.62515 * 10 8 6 13 13 H 1.48505 * 109.46867 * 332.62234 * 10 8 6 14 14 C 1.34768 * 120.00059 * 90.00207 * 5 4 3 15 15 O 1.21290 * 120.00174 * 355.43592 * 14 5 4 16 16 C 1.50698 * 119.99992 * 175.44425 * 14 5 4 17 17 H 1.08997 * 109.47230 * 314.10442 * 16 14 5 18 18 C 1.53004 * 109.47336 * 74.09999 * 16 14 5 19 19 C 1.50704 * 109.47388 * 194.10360 * 16 14 5 20 20 C 1.38259 * 119.99663 * 293.16331 * 19 16 14 21 21 C 1.38214 * 119.99967 * 179.97438 * 20 19 16 22 22 C 1.38261 * 119.99782 * 359.95382 * 21 20 19 23 23 C 1.38207 * 119.99932 * 359.79140 * 22 21 20 24 24 C 1.50701 * 120.00047 * 180.25656 * 23 22 21 25 25 C 1.38211 * 120.00192 * 113.13458 * 19 16 14 26 26 H 1.08988 * 109.47470 * 59.99422 * 1 2 3 27 27 H 1.09007 * 109.46694 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46649 * 299.99148 * 1 2 3 29 29 H 1.09002 * 109.46740 * 60.00614 * 3 2 1 30 30 H 1.09003 * 109.47118 * 300.01064 * 3 2 1 31 31 H 1.09006 * 109.47201 * 305.00523 * 4 3 2 32 32 H 1.09002 * 109.47726 * 185.00353 * 4 3 2 33 33 H 0.96998 * 119.99868 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47046 * 303.20732 * 18 16 14 35 35 H 1.09005 * 109.46660 * 63.20993 * 18 16 14 36 36 H 1.09004 * 109.47050 * 183.20671 * 18 16 14 37 37 H 1.08002 * 119.99902 * 359.97029 * 20 19 16 38 38 H 1.07999 * 120.00176 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.99551 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.47015 * 270.23014 * 24 23 22 41 41 H 1.09000 * 109.46958 * 30.22751 * 24 23 22 42 42 H 1.09003 * 109.47526 * 150.22855 * 24 23 22 43 43 H 1.07998 * 119.99981 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5647 -1.2529 6 6 4.0969 -0.7983 -1.3371 7 1 3.2556 -1.4313 -1.0962 8 6 5.3022 -1.3654 -1.7327 9 7 5.3259 -2.5863 -2.2182 10 14 6.8888 -0.3924 -1.5741 11 1 7.5256 -0.6934 -0.2668 12 1 7.8130 -0.7699 -2.6734 13 1 6.5891 1.0598 -1.6561 14 6 4.2614 1.3341 -2.3218 15 8 4.0754 2.5317 -2.2742 16 6 4.8119 0.7064 -3.5764 17 1 5.6068 0.0081 -3.3146 18 6 3.6942 -0.0430 -4.3046 19 6 5.3643 1.7822 -4.4757 20 6 4.5120 2.7043 -5.0544 21 6 5.0186 3.6913 -5.8788 22 6 6.3777 3.7570 -6.1239 23 6 7.2302 2.8383 -5.5412 24 6 8.7122 2.9134 -5.8037 25 6 6.7228 1.8473 -4.7215 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 1.6886 1.8463 0.8901 30 1 1.6884 1.8465 -0.8899 31 1 3.8515 0.5683 0.8409 32 1 3.9785 2.1767 0.0890 33 1 6.1672 -2.9820 -2.4947 34 1 3.2565 -0.7829 -3.6346 35 1 2.9258 0.6645 -4.6166 36 1 4.1042 -0.5442 -5.1814 37 1 3.4504 2.6534 -4.8623 38 1 4.3529 4.4114 -6.3312 39 1 6.7736 4.5285 -6.7678 40 1 8.9565 2.3153 -6.6816 41 1 8.9979 3.9505 -5.9798 42 1 9.2543 2.5289 -4.9398 43 1 7.3885 1.1270 -4.2694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:37 Heat of formation + Delta-G solvation = -47.885359 kcal Electronic energy + Delta-G solvation = -24522.405710 eV Core-core repulsion = 21147.173284 eV Total energy + Delta-G solvation = -3375.232426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.77000 -38.45027 -37.13411 -34.68801 -33.91015 -32.18271 -31.73897 -29.67299 -28.71058 -26.50444 -25.94347 -24.54748 -23.91896 -22.41606 -21.67954 -20.31319 -18.83529 -17.27793 -16.25424 -16.00019 -15.79144 -15.20590 -15.05167 -14.87132 -14.37337 -14.20591 -13.92811 -13.58438 -13.38505 -12.98625 -12.83106 -12.74985 -12.50722 -12.14673 -11.98597 -11.69167 -11.48738 -11.39180 -11.31479 -11.12085 -10.97413 -10.86344 -10.82449 -10.53794 -10.32406 -10.13738 -9.69289 -9.17091 -8.95686 -8.62164 -8.27781 -8.09677 -7.47253 -6.43402 -4.16061 1.81089 1.82841 3.07796 3.19396 3.29679 3.76958 4.08518 4.16346 4.35579 4.56962 4.91031 5.13821 5.14578 5.33334 5.52189 5.55189 5.58640 5.62444 5.72671 5.75099 5.84808 5.88051 5.93370 5.96575 5.98718 5.99567 6.03541 6.14088 6.16921 6.31426 6.49581 6.54201 6.58804 6.66724 6.69307 6.88721 6.93751 7.18167 7.24892 7.46131 7.68896 7.74986 7.86479 8.63895 9.03178 9.34211 9.76111 10.65057 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.006428 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.472716 B = 4355.017866 C = 5236.586843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.055 3.945 4 C 0.110 3.890 5 N -0.467 5.467 6 C -0.337 4.337 7 H 0.108 0.892 8 C 0.077 3.923 9 N -0.853 5.853 10 Si 0.841 3.159 11 H -0.278 1.278 12 H -0.277 1.277 13 H -0.256 1.256 14 C 0.506 3.494 15 O -0.589 6.589 16 C -0.062 4.062 17 H 0.094 0.906 18 C -0.126 4.126 19 C -0.047 4.047 20 C -0.087 4.087 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.095 4.095 24 C -0.110 4.110 25 C -0.120 4.120 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.030 0.970 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.274 0.726 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 7.107 -3.651 8.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.023 4.023 4 C -0.013 4.013 5 N -0.188 5.188 6 C -0.464 4.464 7 H 0.126 0.874 8 C -0.130 4.130 9 N -0.488 5.488 10 Si 0.667 3.333 11 H -0.205 1.205 12 H -0.203 1.203 13 H -0.180 1.180 14 C 0.296 3.704 15 O -0.473 6.473 16 C -0.083 4.083 17 H 0.112 0.888 18 C -0.184 4.184 19 C -0.047 4.047 20 C -0.105 4.105 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.095 4.095 24 C -0.167 4.167 25 C -0.138 4.138 26 H 0.052 0.948 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.908 7.343 -3.674 8.261 hybrid contribution 0.808 0.483 0.272 0.980 sum -0.100 7.826 -3.402 8.534 Atomic orbital electron populations 1.22650 0.82834 1.02048 0.98923 1.88094 1.17955 1.27477 1.95099 1.22931 0.95539 0.84686 0.99168 1.21530 0.91492 0.98786 0.89492 1.43540 1.60928 1.06999 1.07321 1.19018 0.98671 0.79382 1.49364 0.87432 1.25605 0.97685 0.95096 0.94631 1.69739 1.27492 1.14767 1.36814 0.87445 0.84785 0.82535 0.78563 1.20489 1.20280 1.18045 1.20348 0.79113 0.86329 0.84635 1.90531 1.57673 1.15578 1.83484 1.20209 1.00121 0.95095 0.92838 0.88835 1.21608 0.96420 1.00219 1.00109 1.19705 0.93089 0.96056 0.95894 1.20913 0.99870 0.94061 0.95611 1.21030 0.95159 0.98635 0.99252 1.20849 0.93499 0.99360 1.01208 1.19754 0.95671 0.95943 0.98154 1.20742 0.92079 1.01980 1.01892 1.20940 0.94857 0.98696 0.99333 0.94793 0.90142 0.95097 0.94049 0.93455 0.90267 0.90579 0.91554 0.88754 0.93740 0.93049 0.86212 0.86567 0.86776 0.91503 0.91865 0.91899 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.17 9.75 -35.23 -0.34 -7.51 16 3 C 0.05 1.01 6.28 37.15 0.23 1.24 16 4 C 0.11 2.30 5.77 -4.04 -0.02 2.28 16 5 N -0.47 -11.17 1.84 -114.81 -0.21 -11.38 16 6 C -0.34 -8.64 7.28 -14.93 -0.11 -8.75 16 7 H 0.11 3.01 7.51 -52.49 -0.39 2.61 16 8 C 0.08 1.99 4.04 -17.46 -0.07 1.92 16 9 N -0.85 -22.77 13.96 55.50 0.77 -22.00 16 10 Si 0.84 20.26 24.15 -169.99 -4.11 16.15 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.26 -6.40 5.81 56.52 0.33 -6.07 16 14 C 0.51 12.27 4.95 -10.99 -0.05 12.22 16 15 O -0.59 -14.96 14.87 5.55 0.08 -14.87 16 16 C -0.06 -1.40 1.50 -92.92 -0.14 -1.54 16 17 H 0.09 2.24 2.52 -51.93 -0.13 2.11 16 18 C -0.13 -2.63 8.79 37.16 0.33 -2.30 16 19 C -0.05 -0.98 4.45 -104.62 -0.47 -1.45 16 20 C -0.09 -1.65 8.00 -39.58 -0.32 -1.96 16 21 C -0.12 -1.99 10.05 -39.58 -0.40 -2.39 16 22 C -0.13 -2.02 9.70 -39.58 -0.38 -2.41 16 23 C -0.10 -1.58 5.88 -104.63 -0.62 -2.20 16 24 C -0.11 -1.42 10.01 36.01 0.36 -1.06 16 25 C -0.12 -2.35 9.33 -39.58 -0.37 -2.72 16 26 H 0.03 0.47 8.14 -51.94 -0.42 0.05 16 27 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.59 8.04 -51.93 -0.42 1.18 16 32 H 0.08 1.54 7.49 -51.93 -0.39 1.16 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.09 2.17 6.48 -51.93 -0.34 1.83 16 35 H 0.04 0.84 6.92 -51.93 -0.36 0.49 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.12 2.25 7.13 -52.49 -0.37 1.88 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 42 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 43 H 0.11 2.21 7.15 -52.49 -0.38 1.84 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -29.50 342.46 -6.18 -35.69 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.63 Total: 6.29 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.91 Total: -7.52 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.56 Total: -33.38 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.26 Total: -22.39 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.11 Total: 16.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.50 -6.18 -35.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.200 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds