Wall clock time and date at job start Tue Mar 31 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99726 * 2 1 4 4 C 1.52993 * 109.47351 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46946 * 65.00492 * 4 3 2 6 6 C 1.37096 * 119.99448 * 270.00024 * 5 4 3 7 7 H 1.08001 * 120.00480 * 55.32954 * 6 5 4 8 8 C 1.38954 * 119.99811 * 235.31945 * 6 5 4 9 9 N 1.31415 * 120.00063 * 201.46689 * 8 6 5 10 10 Si 1.86795 * 119.99988 * 21.47701 * 8 6 5 11 11 H 1.48500 * 109.47508 * 92.62222 * 10 8 6 12 12 H 1.48496 * 109.47189 * 212.62515 * 10 8 6 13 13 H 1.48505 * 109.46867 * 332.62234 * 10 8 6 14 14 C 1.34768 * 120.00059 * 90.00207 * 5 4 3 15 15 O 1.21290 * 120.00174 * 355.43592 * 14 5 4 16 16 C 1.50698 * 119.99992 * 175.44425 * 14 5 4 17 17 H 1.08997 * 109.47230 * 314.10442 * 16 14 5 18 18 C 1.53004 * 109.47336 * 74.09999 * 16 14 5 19 19 C 1.50704 * 109.47388 * 194.10360 * 16 14 5 20 20 C 1.38259 * 119.99663 * 293.16331 * 19 16 14 21 21 C 1.38214 * 119.99967 * 179.97438 * 20 19 16 22 22 C 1.38261 * 119.99782 * 359.95382 * 21 20 19 23 23 C 1.38207 * 119.99932 * 359.79140 * 22 21 20 24 24 C 1.50701 * 120.00047 * 180.25656 * 23 22 21 25 25 C 1.38211 * 120.00192 * 113.13458 * 19 16 14 26 26 H 1.08988 * 109.47470 * 59.99422 * 1 2 3 27 27 H 1.09007 * 109.46694 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46649 * 299.99148 * 1 2 3 29 29 H 1.09002 * 109.46740 * 60.00614 * 3 2 1 30 30 H 1.09003 * 109.47118 * 300.01064 * 3 2 1 31 31 H 1.09006 * 109.47201 * 305.00523 * 4 3 2 32 32 H 1.09002 * 109.47726 * 185.00353 * 4 3 2 33 33 H 0.96998 * 119.99868 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47046 * 303.20732 * 18 16 14 35 35 H 1.09005 * 109.46660 * 63.20993 * 18 16 14 36 36 H 1.09004 * 109.47050 * 183.20671 * 18 16 14 37 37 H 1.08002 * 119.99902 * 359.97029 * 20 19 16 38 38 H 1.07999 * 120.00176 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.99551 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.47015 * 270.23014 * 24 23 22 41 41 H 1.09000 * 109.46958 * 30.22751 * 24 23 22 42 42 H 1.09003 * 109.47526 * 150.22855 * 24 23 22 43 43 H 1.07998 * 119.99981 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5647 -1.2529 6 6 4.0969 -0.7983 -1.3371 7 1 3.2556 -1.4313 -1.0962 8 6 5.3022 -1.3654 -1.7327 9 7 5.3259 -2.5863 -2.2182 10 14 6.8888 -0.3924 -1.5741 11 1 7.5256 -0.6934 -0.2668 12 1 7.8130 -0.7699 -2.6734 13 1 6.5891 1.0598 -1.6561 14 6 4.2614 1.3341 -2.3218 15 8 4.0754 2.5317 -2.2742 16 6 4.8119 0.7064 -3.5764 17 1 5.6068 0.0081 -3.3146 18 6 3.6942 -0.0430 -4.3046 19 6 5.3643 1.7822 -4.4757 20 6 4.5120 2.7043 -5.0544 21 6 5.0186 3.6913 -5.8788 22 6 6.3777 3.7570 -6.1239 23 6 7.2302 2.8383 -5.5412 24 6 8.7122 2.9134 -5.8037 25 6 6.7228 1.8473 -4.7215 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 1.6886 1.8463 0.8901 30 1 1.6884 1.8465 -0.8899 31 1 3.8515 0.5683 0.8409 32 1 3.9785 2.1767 0.0890 33 1 6.1672 -2.9820 -2.4947 34 1 3.2565 -0.7829 -3.6346 35 1 2.9258 0.6645 -4.6166 36 1 4.1042 -0.5442 -5.1814 37 1 3.4504 2.6534 -4.8623 38 1 4.3529 4.4114 -6.3312 39 1 6.7736 4.5285 -6.7678 40 1 8.9565 2.3153 -6.6816 41 1 8.9979 3.9505 -5.9798 42 1 9.2543 2.5289 -4.9398 43 1 7.3885 1.1270 -4.2694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:36 Heat of formation + Delta-G solvation = -64.883997 kcal Electronic energy + Delta-G solvation = -24523.142826 eV Core-core repulsion = 21147.173284 eV Total energy + Delta-G solvation = -3375.969542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45003 -39.95139 -38.60319 -36.59071 -35.47670 -34.00384 -33.12857 -31.23004 -30.24153 -27.68659 -27.29512 -26.46346 -25.59230 -23.94716 -23.04776 -21.87541 -20.63108 -19.12313 -17.82498 -17.47532 -17.33977 -16.85268 -16.54775 -16.46708 -15.94808 -15.79837 -15.51645 -15.15200 -14.86924 -14.52596 -14.43101 -14.30403 -13.94072 -13.63820 -13.17552 -13.14002 -13.06833 -12.98722 -12.93853 -12.69568 -12.66038 -12.58594 -12.34792 -12.02379 -11.98586 -11.76768 -11.43364 -10.93429 -10.61519 -10.40219 -9.71062 -9.45259 -9.37450 -8.47418 -6.20739 0.44802 0.49196 1.13778 1.22849 1.31832 1.87756 2.13613 2.60226 2.85852 2.94406 3.06633 3.73135 3.86873 4.04745 4.09856 4.21368 4.22161 4.30118 4.37373 4.41165 4.44744 4.53115 4.56119 4.57916 4.59794 4.68482 4.78350 4.80507 4.85350 4.92441 4.96238 4.98677 5.01393 5.14475 5.29334 5.41145 5.59041 5.65698 5.77000 5.77197 5.93644 6.15308 6.35848 6.55737 7.01544 7.39796 7.82377 8.64384 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.006428 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.472716 B = 4355.017866 C = 5236.586843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.063 3.937 4 C 0.101 3.899 5 N -0.474 5.474 6 C -0.328 4.328 7 H 0.080 0.920 8 C 0.056 3.944 9 N -0.880 5.880 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.267 1.267 13 H -0.271 1.271 14 C 0.501 3.499 15 O -0.604 6.604 16 C -0.063 4.063 17 H 0.077 0.923 18 C -0.115 4.115 19 C -0.074 4.074 20 C -0.106 4.106 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.095 4.095 24 C -0.110 4.110 25 C -0.147 4.147 26 H 0.037 0.963 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.278 0.722 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 9.187 -4.706 10.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.014 4.014 4 C -0.021 4.021 5 N -0.195 5.195 6 C -0.456 4.456 7 H 0.097 0.903 8 C -0.150 4.150 9 N -0.516 5.516 10 Si 0.711 3.289 11 H -0.204 1.204 12 H -0.192 1.192 13 H -0.196 1.196 14 C 0.291 3.709 15 O -0.489 6.489 16 C -0.084 4.084 17 H 0.094 0.906 18 C -0.173 4.173 19 C -0.075 4.075 20 C -0.124 4.124 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.095 4.095 24 C -0.166 4.166 25 C -0.165 4.165 26 H 0.055 0.945 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.167 0.833 39 H 0.173 0.827 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.337 9.414 -4.718 10.536 hybrid contribution 0.558 -0.120 0.578 0.812 sum 0.221 9.294 -4.140 10.177 Atomic orbital electron populations 1.22857 0.80417 1.03263 1.00331 1.88039 1.20704 1.28022 1.95373 1.22796 0.93745 0.84705 1.00171 1.21725 0.93492 0.98693 0.88213 1.43637 1.60974 1.06423 1.08443 1.18666 0.97826 0.79947 1.49136 0.90261 1.25864 0.99219 0.95519 0.94384 1.69787 1.28211 1.15807 1.37802 0.86767 0.82856 0.80636 0.78601 1.20445 1.19216 1.19642 1.20692 0.78821 0.86246 0.85158 1.90494 1.58442 1.16082 1.83850 1.20170 0.99794 0.95618 0.92810 0.90557 1.21487 0.96417 0.99693 0.99696 1.19680 0.94101 0.96682 0.97014 1.20965 0.99396 0.95064 0.96965 1.21426 0.96342 0.97895 0.97838 1.21328 0.92932 0.99385 1.00532 1.20196 0.97926 0.94750 0.96669 1.20825 0.89373 1.03996 1.02416 1.21019 0.94278 1.00084 1.01124 0.94476 0.89151 0.92463 0.90387 0.94879 0.89920 0.90207 0.91136 0.91469 0.92432 0.91906 0.86989 0.83280 0.82696 0.89818 0.89281 0.92359 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -15.65 9.75 -148.98 -1.45 -17.11 16 3 C 0.06 2.32 6.28 71.98 0.45 2.77 16 4 C 0.10 4.26 5.77 86.38 0.50 4.75 16 5 N -0.47 -23.17 1.84 -635.54 -1.17 -24.34 16 6 C -0.33 -17.34 7.28 84.04 0.61 -16.73 16 7 H 0.08 4.63 7.51 -2.91 -0.02 4.61 16 8 C 0.06 2.94 4.04 84.93 0.34 3.28 16 9 N -0.88 -48.03 13.96 21.66 0.30 -47.73 16 10 Si 0.89 42.74 24.15 68.60 1.66 44.39 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 H -0.27 -13.71 5.81 99.48 0.58 -13.14 16 14 C 0.50 24.76 4.95 87.66 0.43 25.19 16 15 O -0.60 -31.02 14.87 -3.06 -0.05 -31.07 16 16 C -0.06 -2.91 1.50 -12.28 -0.02 -2.93 16 17 H 0.08 3.75 2.52 -2.39 -0.01 3.75 16 18 C -0.12 -4.95 8.79 71.98 0.63 -4.32 16 19 C -0.07 -3.11 4.45 -19.86 -0.09 -3.20 16 20 C -0.11 -3.94 8.00 22.27 0.18 -3.76 16 21 C -0.12 -3.47 10.05 22.27 0.22 -3.24 16 22 C -0.12 -3.35 9.70 22.27 0.22 -3.13 16 23 C -0.10 -2.93 5.88 -19.87 -0.12 -3.05 16 24 C -0.11 -2.48 10.01 71.24 0.71 -1.76 16 25 C -0.15 -5.70 9.33 22.27 0.21 -5.49 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 3.35 8.04 -2.38 -0.02 3.33 16 32 H 0.08 3.24 7.49 -2.39 -0.02 3.23 16 33 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.07 3.22 6.48 -2.39 -0.02 3.20 16 35 H 0.06 2.25 6.92 -2.38 -0.02 2.23 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.11 4.22 7.13 -2.91 -0.02 4.20 16 38 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 42 H 0.06 1.37 8.09 -2.39 -0.02 1.35 16 43 H 0.10 3.96 7.15 -2.91 -0.02 3.94 16 Total: -1.00 -65.07 342.46 5.69 -59.38 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.86 Total: 26.07 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 5.54 Total: -9.60 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -0.87 Total: -72.07 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -1.50 Total: -48.18 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.66 Total: 44.39 kcal Total: -65.07 5.69 -59.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.505 kcal (2) G-P(sol) polarization free energy of solvation -65.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds