Wall clock time and date at job start Tue Mar 31 2020 07:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47417 * 2 1 4 4 C 1.38234 * 120.00079 * 269.73191 * 3 2 1 5 5 C 1.38233 * 120.00317 * 179.76300 * 4 3 2 6 6 C 1.38240 * 119.99316 * 0.48510 * 5 4 3 7 7 C 1.50704 * 119.99452 * 179.76649 * 6 5 4 8 8 C 1.50701 * 109.46976 * 270.01890 * 7 6 5 9 9 O 1.21287 * 120.00282 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99577 * 180.02562 * 8 7 6 11 11 C 1.37101 * 120.00486 * 0.02562 * 10 8 7 12 12 H 1.07998 * 119.99862 * 325.65696 * 11 10 8 13 13 C 1.38951 * 119.99924 * 145.64810 * 11 10 8 14 14 N 1.31415 * 120.00318 * 338.15834 * 13 11 10 15 15 Si 1.86803 * 119.99855 * 158.16720 * 13 11 10 16 16 H 1.48499 * 109.47371 * 59.99431 * 15 13 11 17 17 H 1.48496 * 109.47313 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46667 * 299.99564 * 15 13 11 19 19 C 1.46505 * 119.99910 * 180.02562 * 10 8 7 20 20 C 1.52999 * 109.47187 * 84.55128 * 19 10 8 21 21 O 1.42908 * 109.46795 * 65.00407 * 20 19 10 22 22 C 1.42899 * 113.99513 * 179.97438 * 21 20 19 23 23 C 1.38229 * 120.00361 * 359.78913 * 6 5 4 24 24 C 1.38231 * 119.99991 * 359.95852 * 23 6 5 25 25 H 1.09010 * 109.46721 * 299.99804 * 1 2 3 26 26 H 1.08993 * 109.47288 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47341 * 59.99258 * 1 2 3 28 28 H 1.08996 * 109.47241 * 120.00196 * 2 1 3 29 29 H 1.09000 * 109.46804 * 240.00404 * 2 1 3 30 30 H 1.08003 * 120.00001 * 359.97438 * 4 3 2 31 31 H 1.07995 * 120.00606 * 180.25475 * 5 4 3 32 32 H 1.08991 * 109.47104 * 30.02436 * 7 6 5 33 33 H 1.09000 * 109.46752 * 150.02359 * 7 6 5 34 34 H 0.96998 * 120.00020 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47231 * 204.55705 * 19 10 8 36 36 H 1.09001 * 109.46937 * 324.55088 * 19 10 8 37 37 H 1.08998 * 109.46845 * 184.99725 * 20 19 10 38 38 H 1.08994 * 109.46804 * 305.00306 * 20 19 10 39 39 H 1.09000 * 109.46764 * 179.97438 * 22 21 20 40 40 H 1.08995 * 109.47513 * 299.99873 * 22 21 20 41 41 H 1.09008 * 109.47038 * 59.99995 * 22 21 20 42 42 H 1.07998 * 120.00258 * 179.97438 * 23 6 5 43 43 H 1.08003 * 120.00206 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1972 6 6 2.9543 4.0272 0.0000 7 6 3.4566 5.4481 0.0000 8 6 4.9637 5.4480 -0.0001 9 8 5.5701 4.3977 -0.0005 10 7 5.6375 6.6152 0.0004 11 6 4.9520 7.8026 0.0014 12 1 4.0130 7.8845 -0.5258 13 6 5.4653 8.9006 0.6809 14 7 6.3365 8.7257 1.6492 15 14 4.9169 10.6253 0.2183 16 1 3.4482 10.7439 0.4025 17 1 5.6066 11.6135 1.0860 18 1 5.2606 10.8896 -1.2021 19 6 7.1025 6.6153 -0.0002 20 6 7.6120 6.4793 -1.4365 21 8 7.2336 7.6347 -2.1875 22 6 7.6635 7.6086 -3.5500 23 6 2.7240 3.3756 1.1971 24 6 2.2629 2.0725 1.1971 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0926 1.5599 -2.1324 31 1 2.9045 3.8845 -2.1324 32 1 3.0932 5.9619 -0.8899 33 1 3.0934 5.9618 0.8900 34 1 6.6951 9.4922 2.1233 35 1 7.4660 7.5497 0.4273 36 1 7.4661 5.7777 0.5951 37 1 8.6983 6.3901 -1.4297 38 1 7.1771 5.5904 -1.8935 39 1 7.3369 8.5196 -4.0515 40 1 8.7508 7.5430 -3.5868 41 1 7.2300 6.7430 -4.0512 42 1 2.9041 3.8846 2.1324 43 1 2.0833 1.5631 2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:38 Heat of formation + Delta-G solvation = -63.572016 kcal Electronic energy + Delta-G solvation = -23358.379119 eV Core-core repulsion = 19982.466469 eV Total energy + Delta-G solvation = -3375.912650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.36824 -38.33346 -36.90322 -34.78714 -34.14919 -31.53283 -30.97447 -30.51107 -29.17780 -26.66284 -25.73024 -24.59964 -23.17358 -22.31701 -21.71683 -20.21219 -18.97771 -16.96495 -16.15418 -15.69342 -15.49820 -15.30864 -15.22233 -14.76306 -14.38040 -14.28643 -13.97238 -13.70501 -13.52268 -13.25940 -12.94433 -12.80682 -12.46522 -11.97641 -11.78665 -11.62667 -11.42944 -11.28235 -11.13981 -11.10466 -10.97680 -10.77823 -10.59123 -10.47778 -10.43364 -10.35688 -9.99192 -9.10593 -8.93774 -8.48760 -8.48150 -7.98027 -7.47955 -6.30822 -3.94704 1.77192 1.84552 3.19704 3.27721 3.33029 3.94297 4.11194 4.22884 4.53764 4.86223 4.93510 4.99306 5.14037 5.33657 5.34275 5.41040 5.46902 5.60827 5.67945 5.73704 5.76637 5.82311 5.95217 5.98872 6.01743 6.06618 6.10941 6.15439 6.18406 6.33302 6.38935 6.42819 6.53264 6.59345 6.78230 6.85304 6.94778 7.17251 7.32034 7.44025 7.52365 7.84072 8.02606 8.42235 9.16387 9.57738 9.99427 10.71960 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.004071 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.256160 B = 6875.863147 C = 7544.864683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.100 4.100 4 C -0.119 4.119 5 C -0.107 4.107 6 C -0.045 4.045 7 C -0.086 4.086 8 C 0.470 3.530 9 O -0.604 6.604 10 N -0.430 5.430 11 C -0.325 4.325 12 H 0.087 0.913 13 C 0.049 3.951 14 N -0.863 5.863 15 Si 0.914 3.086 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.271 1.271 19 C 0.114 3.886 20 C 0.052 3.948 21 O -0.365 6.365 22 C 0.031 3.969 23 C -0.104 4.104 24 C -0.119 4.119 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.269 0.731 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.077 0.923 40 H 0.030 0.970 41 H 0.031 0.969 42 H 0.118 0.882 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 -8.152 -4.569 11.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.100 4.100 4 C -0.138 4.138 5 C -0.125 4.125 6 C -0.045 4.045 7 C -0.126 4.126 8 C 0.259 3.741 9 O -0.490 6.490 10 N -0.147 5.147 11 C -0.453 4.453 12 H 0.105 0.895 13 C -0.156 4.156 14 N -0.501 5.501 15 Si 0.740 3.260 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.009 4.009 20 C -0.026 4.026 21 O -0.283 6.283 22 C -0.066 4.066 23 C -0.122 4.122 24 C -0.137 4.137 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.136 0.864 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.644 -8.365 -4.338 10.984 hybrid contribution 0.117 0.873 -0.452 0.990 sum -5.527 -7.493 -4.790 10.470 Atomic orbital electron populations 1.21745 0.95160 1.01163 1.02177 1.20474 0.95799 0.93199 1.02351 1.19723 1.00973 0.95887 0.93371 1.20852 1.00991 0.94869 0.97039 1.20941 0.99282 0.94706 0.97585 1.19617 0.96033 0.95798 0.93051 1.20458 0.95019 0.92719 1.04408 1.20212 0.88863 0.83937 0.81078 1.90537 1.70256 1.31728 1.56513 1.43341 1.04175 1.04639 1.62579 1.19265 1.07198 0.87504 1.31315 0.89514 1.25213 0.96837 1.00088 0.93504 1.69901 1.30518 1.31578 1.18072 0.86226 0.78621 0.82145 0.78978 1.20001 1.21159 1.19662 1.21461 0.82696 1.04783 0.92003 1.23043 0.96887 0.87765 0.94864 1.88137 1.78225 1.41450 1.20452 1.22640 0.97698 1.01205 0.85088 1.20983 0.98805 0.94678 0.97766 1.20876 1.00825 0.94897 0.97067 0.92624 0.92845 0.92656 0.91428 0.91472 0.86851 0.86644 0.89542 0.88625 0.92115 0.86611 0.91413 0.94400 0.94114 0.90472 0.95189 0.95035 0.86358 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 37.16 0.37 -1.02 16 2 C -0.08 -0.89 6.07 -27.88 -0.17 -1.06 16 3 C -0.10 -1.43 5.13 -104.62 -0.54 -1.97 16 4 C -0.12 -1.81 9.70 -39.58 -0.38 -2.19 16 5 C -0.11 -1.84 9.70 -39.58 -0.38 -2.23 16 6 C -0.04 -0.84 4.37 -104.62 -0.46 -1.29 16 7 C -0.09 -1.75 4.49 -29.03 -0.13 -1.88 16 8 C 0.47 11.47 7.59 -10.99 -0.08 11.38 16 9 O -0.60 -16.00 15.70 5.55 0.09 -15.92 16 10 N -0.43 -10.84 2.51 -114.81 -0.29 -11.13 16 11 C -0.33 -8.26 8.48 -14.93 -0.13 -8.38 16 12 H 0.09 2.11 6.98 -52.49 -0.37 1.75 16 13 C 0.05 1.24 4.93 -17.47 -0.09 1.15 16 14 N -0.86 -22.85 11.34 55.50 0.63 -22.22 16 15 Si 0.91 19.94 29.61 -169.99 -5.03 14.91 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 17 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 C 0.11 2.78 5.29 -4.04 -0.02 2.75 16 20 C 0.05 1.11 6.24 37.16 0.23 1.34 16 21 O -0.36 -7.90 10.44 -35.23 -0.37 -8.27 16 22 C 0.03 0.50 11.01 101.05 1.11 1.62 16 23 C -0.10 -1.83 9.70 -39.59 -0.38 -2.21 16 24 C -0.12 -1.82 9.70 -39.59 -0.38 -2.20 16 25 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 29 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.09 1.64 7.59 -51.93 -0.39 1.25 16 33 H 0.10 1.91 8.04 -51.93 -0.42 1.49 16 34 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.12 3.00 5.37 -51.93 -0.28 2.72 16 36 H 0.07 1.66 7.59 -51.93 -0.39 1.27 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 43 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -30.09 360.63 -7.87 -37.96 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.90 Total: 5.41 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.44 Total: -6.19 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.34 Total: -33.35 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.28 Total: -24.18 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.09 -7.87 -37.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.611 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds