Wall clock time and date at job start Tue Mar 31 2020 07:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47417 * 2 1 4 4 C 1.38234 * 120.00079 * 269.73191 * 3 2 1 5 5 C 1.38233 * 120.00317 * 179.76300 * 4 3 2 6 6 C 1.38240 * 119.99316 * 0.48510 * 5 4 3 7 7 C 1.50704 * 119.99452 * 179.76649 * 6 5 4 8 8 C 1.50701 * 109.46976 * 270.01890 * 7 6 5 9 9 O 1.21287 * 120.00282 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99577 * 180.02562 * 8 7 6 11 11 C 1.37101 * 120.00486 * 0.02562 * 10 8 7 12 12 H 1.07998 * 119.99862 * 325.65696 * 11 10 8 13 13 C 1.38951 * 119.99924 * 145.64810 * 11 10 8 14 14 N 1.31415 * 120.00318 * 338.15834 * 13 11 10 15 15 Si 1.86803 * 119.99855 * 158.16720 * 13 11 10 16 16 H 1.48499 * 109.47371 * 59.99431 * 15 13 11 17 17 H 1.48496 * 109.47313 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46667 * 299.99564 * 15 13 11 19 19 C 1.46505 * 119.99910 * 180.02562 * 10 8 7 20 20 C 1.52999 * 109.47187 * 84.55128 * 19 10 8 21 21 O 1.42908 * 109.46795 * 65.00407 * 20 19 10 22 22 C 1.42899 * 113.99513 * 179.97438 * 21 20 19 23 23 C 1.38229 * 120.00361 * 359.78913 * 6 5 4 24 24 C 1.38231 * 119.99991 * 359.95852 * 23 6 5 25 25 H 1.09010 * 109.46721 * 299.99804 * 1 2 3 26 26 H 1.08993 * 109.47288 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47341 * 59.99258 * 1 2 3 28 28 H 1.08996 * 109.47241 * 120.00196 * 2 1 3 29 29 H 1.09000 * 109.46804 * 240.00404 * 2 1 3 30 30 H 1.08003 * 120.00001 * 359.97438 * 4 3 2 31 31 H 1.07995 * 120.00606 * 180.25475 * 5 4 3 32 32 H 1.08991 * 109.47104 * 30.02436 * 7 6 5 33 33 H 1.09000 * 109.46752 * 150.02359 * 7 6 5 34 34 H 0.96998 * 120.00020 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47231 * 204.55705 * 19 10 8 36 36 H 1.09001 * 109.46937 * 324.55088 * 19 10 8 37 37 H 1.08998 * 109.46845 * 184.99725 * 20 19 10 38 38 H 1.08994 * 109.46804 * 305.00306 * 20 19 10 39 39 H 1.09000 * 109.46764 * 179.97438 * 22 21 20 40 40 H 1.08995 * 109.47513 * 299.99873 * 22 21 20 41 41 H 1.09008 * 109.47038 * 59.99995 * 22 21 20 42 42 H 1.07998 * 120.00258 * 179.97438 * 23 6 5 43 43 H 1.08003 * 120.00206 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1972 6 6 2.9543 4.0272 0.0000 7 6 3.4566 5.4481 0.0000 8 6 4.9637 5.4480 -0.0001 9 8 5.5701 4.3977 -0.0005 10 7 5.6375 6.6152 0.0004 11 6 4.9520 7.8026 0.0014 12 1 4.0130 7.8845 -0.5258 13 6 5.4653 8.9006 0.6809 14 7 6.3365 8.7257 1.6492 15 14 4.9169 10.6253 0.2183 16 1 3.4482 10.7439 0.4025 17 1 5.6066 11.6135 1.0860 18 1 5.2606 10.8896 -1.2021 19 6 7.1025 6.6153 -0.0002 20 6 7.6120 6.4793 -1.4365 21 8 7.2336 7.6347 -2.1875 22 6 7.6635 7.6086 -3.5500 23 6 2.7240 3.3756 1.1971 24 6 2.2629 2.0725 1.1971 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0926 1.5599 -2.1324 31 1 2.9045 3.8845 -2.1324 32 1 3.0932 5.9619 -0.8899 33 1 3.0934 5.9618 0.8900 34 1 6.6951 9.4922 2.1233 35 1 7.4660 7.5497 0.4273 36 1 7.4661 5.7777 0.5951 37 1 8.6983 6.3901 -1.4297 38 1 7.1771 5.5904 -1.8935 39 1 7.3369 8.5196 -4.0515 40 1 8.7508 7.5430 -3.5868 41 1 7.2300 6.7430 -4.0512 42 1 2.9041 3.8846 2.1324 43 1 2.0833 1.5631 2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:37 Heat of formation + Delta-G solvation = -79.270590 kcal Electronic energy + Delta-G solvation = -23359.059861 eV Core-core repulsion = 19982.466469 eV Total energy + Delta-G solvation = -3376.593391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.89773 -39.91610 -38.53033 -36.60418 -35.39048 -33.48845 -32.34235 -31.75636 -30.77154 -28.00326 -27.25856 -26.42389 -24.39486 -23.56525 -23.27066 -21.48222 -20.85364 -18.77434 -17.95181 -17.17259 -17.04716 -16.81728 -16.58754 -16.18323 -16.09508 -15.87754 -15.57723 -15.09797 -14.60133 -14.50166 -14.43128 -14.13867 -13.70926 -13.57645 -13.39706 -13.08483 -12.90997 -12.80661 -12.63378 -12.52210 -12.46944 -12.34830 -12.09402 -11.98789 -11.80316 -11.60995 -11.59739 -10.98914 -10.56203 -10.34741 -9.74138 -9.45979 -9.30080 -8.24811 -5.94414 0.50005 0.58284 1.45148 1.52446 1.59707 2.05596 2.37385 2.78661 2.99031 3.09922 3.28734 3.88470 3.94884 4.07146 4.19969 4.23117 4.27847 4.30229 4.50539 4.52314 4.55482 4.56923 4.62013 4.63041 4.66197 4.74823 4.78603 4.83100 4.86547 4.90721 5.10161 5.12407 5.24748 5.29017 5.36620 5.43705 5.53606 5.59199 5.77121 5.83087 6.01010 6.21227 6.39420 6.46270 7.20051 7.64678 8.06167 8.78575 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.004071 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.256160 B = 6875.863147 C = 7544.864683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.095 4.095 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.073 4.073 7 C -0.074 4.074 8 C 0.459 3.541 9 O -0.631 6.631 10 N -0.440 5.440 11 C -0.338 4.338 12 H 0.094 0.906 13 C 0.010 3.990 14 N -0.894 5.894 15 Si 0.976 3.024 16 H -0.263 1.263 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.112 3.888 20 C 0.065 3.935 21 O -0.396 6.396 22 C 0.025 3.975 23 C -0.123 4.123 24 C -0.123 4.123 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.270 0.730 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.030 0.970 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.039 0.961 42 H 0.113 0.887 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 -8.928 -5.755 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.095 4.095 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.073 4.073 7 C -0.114 4.114 8 C 0.249 3.751 9 O -0.519 6.519 10 N -0.157 5.157 11 C -0.465 4.465 12 H 0.111 0.889 13 C -0.193 4.193 14 N -0.532 5.532 15 Si 0.801 3.199 16 H -0.187 1.187 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.012 4.012 20 C -0.012 4.012 21 O -0.315 6.315 22 C -0.071 4.071 23 C -0.142 4.142 24 C -0.140 4.140 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.159 0.841 31 H 0.137 0.863 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.131 0.869 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.771 -9.140 -5.533 12.649 hybrid contribution 0.485 1.031 -0.095 1.143 sum -6.287 -8.109 -5.629 11.703 Atomic orbital electron populations 1.21723 0.93856 1.02455 1.01914 1.20557 0.96793 0.90825 1.03520 1.20184 0.99188 0.97472 0.92651 1.21195 1.00003 0.94084 0.98663 1.21106 0.99805 0.95847 0.97136 1.19596 0.98159 0.95258 0.94315 1.20332 0.92057 0.94490 1.04520 1.20897 0.90573 0.83309 0.80283 1.90492 1.71251 1.32525 1.57665 1.43569 1.04600 1.05023 1.62533 1.19538 1.07668 0.87792 1.31508 0.88886 1.25983 0.96868 1.03304 0.93101 1.70002 1.31699 1.32511 1.18983 0.85252 0.78783 0.77646 0.78239 1.18715 1.21063 1.19796 1.21399 0.82737 1.03110 0.93966 1.22792 0.98121 0.87405 0.92929 1.88066 1.79103 1.41305 1.23026 1.22890 0.99242 1.02493 0.82519 1.21110 0.99838 0.95953 0.97262 1.21180 1.00069 0.94055 0.98737 0.93009 0.90805 0.92857 0.90413 0.90231 0.84133 0.86337 0.88669 0.88980 0.92043 0.88308 0.92908 0.91712 0.95199 0.88775 0.92995 0.94257 0.86891 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.89 71.98 0.71 -1.56 16 2 C -0.08 -1.51 6.07 29.85 0.18 -1.33 16 3 C -0.09 -2.54 5.13 -19.87 -0.10 -2.64 16 4 C -0.12 -3.47 9.70 22.27 0.22 -3.26 16 5 C -0.12 -4.12 9.70 22.27 0.22 -3.91 16 6 C -0.07 -2.78 4.37 -19.86 -0.09 -2.87 16 7 C -0.07 -3.11 4.49 29.10 0.13 -2.98 16 8 C 0.46 23.10 7.59 87.66 0.67 23.76 16 9 O -0.63 -34.52 15.70 -3.05 -0.05 -34.57 16 10 N -0.44 -22.80 2.51 -635.54 -1.60 -24.40 16 11 C -0.34 -17.37 8.48 84.04 0.71 -16.66 16 12 H 0.09 4.56 6.98 -2.91 -0.02 4.54 16 13 C 0.01 0.51 4.93 84.93 0.42 0.92 16 14 N -0.89 -48.19 11.34 21.66 0.25 -47.95 16 15 Si 0.98 40.76 29.61 68.60 2.03 42.79 16 16 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.29 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 19 C 0.11 5.60 5.29 86.38 0.46 6.05 16 20 C 0.07 2.79 6.24 71.98 0.45 3.24 16 21 O -0.40 -16.95 10.44 -148.98 -1.56 -18.50 16 22 C 0.02 0.76 11.01 113.37 1.25 2.01 16 23 C -0.12 -4.39 9.70 22.27 0.22 -4.17 16 24 C -0.12 -3.62 9.70 22.27 0.22 -3.40 16 25 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 29 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 30 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.12 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.10 3.70 7.59 -2.39 -0.02 3.69 16 33 H 0.09 3.82 8.04 -2.39 -0.02 3.81 16 34 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 35 H 0.10 5.29 5.37 -2.39 -0.01 5.28 16 36 H 0.05 2.71 7.59 -2.39 -0.02 2.70 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.11 3.98 8.06 -2.91 -0.02 3.95 16 43 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -65.42 360.63 5.70 -59.72 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.97 Total: 29.69 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 5.65 Total: -6.79 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -1.35 Total: -72.34 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -1.60 Total: -53.07 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -65.42 5.70 -59.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.551 kcal (2) G-P(sol) polarization free energy of solvation -65.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds