Wall clock time and date at job start Tue Mar 31 2020 07:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50709 * 109.46911 * 2 1 4 4 C 1.38262 * 119.99794 * 265.02725 * 3 2 1 5 5 C 1.38209 * 119.99516 * 179.97438 * 4 3 2 6 6 C 1.38251 * 120.00154 * 359.73712 * 5 4 3 7 7 C 1.38216 * 120.00208 * 0.51493 * 6 5 4 8 8 C 1.38207 * 119.99749 * 84.99993 * 3 2 1 9 9 C 1.50697 * 120.00219 * 0.02562 * 8 3 2 10 10 C 1.50706 * 109.47042 * 85.02311 * 9 8 3 11 11 O 1.21290 * 119.99826 * 2.93559 * 10 9 8 12 12 N 1.34773 * 120.00021 * 182.93447 * 10 9 8 13 13 C 1.37099 * 120.00024 * 4.99784 * 12 10 9 14 14 H 1.08007 * 119.99829 * 324.86422 * 13 12 10 15 15 C 1.38947 * 120.00401 * 144.85823 * 13 12 10 16 16 N 1.31412 * 119.99892 * 337.84900 * 15 13 12 17 17 Si 1.86802 * 120.00273 * 157.83805 * 15 13 12 18 18 H 1.48504 * 109.46645 * 90.00242 * 17 15 13 19 19 H 1.48498 * 109.47612 * 210.00653 * 17 15 13 20 20 H 1.48508 * 109.46929 * 330.00788 * 17 15 13 21 21 C 1.46492 * 120.00229 * 184.99207 * 12 10 9 22 22 C 1.52999 * 109.47167 * 90.00293 * 21 12 10 23 23 O 1.42899 * 109.47177 * 65.00311 * 22 21 12 24 24 C 1.42898 * 114.00108 * 180.02562 * 23 22 21 25 25 H 1.09002 * 109.47090 * 299.99615 * 1 2 3 26 26 H 1.08998 * 109.47689 * 60.00455 * 1 2 3 27 27 H 1.09004 * 109.46795 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47090 * 240.00385 * 2 1 3 29 29 H 1.08998 * 109.47689 * 119.99545 * 2 1 3 30 30 H 1.07995 * 119.99952 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.99373 * 180.02562 * 5 4 3 32 32 H 1.08003 * 120.00078 * 180.27777 * 6 5 4 33 33 H 1.08000 * 120.00080 * 179.75951 * 7 6 5 34 34 H 1.09001 * 109.46990 * 205.02265 * 9 8 3 35 35 H 1.08991 * 109.47287 * 325.01887 * 9 8 3 36 36 H 0.97001 * 120.00020 * 178.66182 * 16 15 13 37 37 H 1.08999 * 109.47222 * 210.00563 * 21 12 10 38 38 H 1.09003 * 109.46869 * 330.00348 * 21 12 10 39 39 H 1.09000 * 109.46874 * 185.00029 * 22 21 12 40 40 H 1.08998 * 109.47073 * 305.00056 * 22 21 12 41 41 H 1.08995 * 109.47259 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.46844 * 299.99860 * 24 23 22 43 43 H 1.08996 * 109.47494 * 59.99569 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0381 -1.1929 5 6 2.8207 3.3413 -1.1929 6 6 2.9475 4.0296 -0.0006 7 6 2.6243 3.4109 1.1923 8 6 2.1642 2.1072 1.1924 9 6 1.8064 1.4345 2.4925 10 6 2.9863 0.6383 2.9876 11 8 4.0333 0.6617 2.3757 12 7 2.8781 -0.0996 4.1101 13 6 1.6679 -0.2084 4.7450 14 1 0.9887 0.6313 4.7603 15 6 1.3148 -1.3988 5.3685 16 7 1.8888 -2.5247 5.0081 17 14 0.0246 -1.3989 6.7194 18 1 -1.3189 -1.6031 6.1205 19 1 0.3113 -2.4963 7.6779 20 1 0.0555 -0.0972 7.4335 21 6 4.0536 -0.7857 4.6519 22 6 4.7752 0.1382 5.6351 23 8 3.9313 0.3883 6.7608 24 6 4.5134 1.2458 7.7446 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 2.2574 1.5018 -2.1246 31 1 3.0767 3.8235 -2.1248 32 1 3.3029 5.0495 -0.0010 33 1 2.7272 3.9474 2.1240 34 1 1.5421 2.1904 3.2320 35 1 0.9585 0.7679 2.3354 36 1 1.6565 -3.3528 5.4567 37 1 3.7391 -1.6921 5.1691 38 1 4.7288 -1.0479 3.8373 39 1 5.6970 -0.3371 5.9705 40 1 5.0113 1.0809 5.1414 41 1 3.8109 1.3858 8.5661 42 1 5.4300 0.7939 8.1238 43 1 4.7438 2.2114 7.2944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:41 Heat of formation + Delta-G solvation = -60.407777 kcal Electronic energy + Delta-G solvation = -24154.379586 eV Core-core repulsion = 20778.604147 eV Total energy + Delta-G solvation = -3375.775438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.54056 -38.22201 -36.87862 -34.64262 -33.83959 -31.97087 -31.52497 -29.46842 -29.00051 -26.82562 -25.73195 -24.58199 -23.42933 -22.24871 -21.24105 -20.05775 -18.96041 -16.93949 -16.17008 -15.83579 -15.59697 -15.34445 -15.23476 -14.66610 -14.39155 -14.25993 -13.96356 -13.43782 -13.31514 -13.08711 -12.87868 -12.50766 -12.32943 -11.97066 -11.77393 -11.58214 -11.35141 -11.22357 -11.15025 -10.98886 -10.87480 -10.77445 -10.59378 -10.33191 -10.31672 -10.17728 -9.98866 -9.11369 -8.94949 -8.53785 -8.30958 -8.01896 -7.45485 -6.28435 -3.93995 1.81827 1.83839 3.18471 3.29078 3.35469 3.92544 4.13754 4.24763 4.53952 4.87216 5.14685 5.17394 5.23535 5.36015 5.42098 5.55743 5.67462 5.72826 5.74985 5.81643 5.93877 5.96765 5.97997 6.01633 6.07881 6.16687 6.25702 6.32551 6.36421 6.39258 6.40251 6.49307 6.65523 6.72278 6.81037 6.88347 6.94198 7.21821 7.32506 7.45868 7.53967 7.84886 8.03943 8.42605 9.17699 9.57870 9.99401 10.73378 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.005610 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.019778 B = 4990.257506 C = 5939.822394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.063 4.063 4 C -0.122 4.122 5 C -0.131 4.131 6 C -0.129 4.129 7 C -0.110 4.110 8 C -0.041 4.041 9 C -0.091 4.091 10 C 0.473 3.527 11 O -0.602 6.602 12 N -0.431 5.431 13 C -0.323 4.323 14 H 0.086 0.914 15 C 0.052 3.948 16 N -0.862 5.862 17 Si 0.911 3.089 18 H -0.281 1.281 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.109 3.891 22 C 0.055 3.945 23 O -0.362 6.362 24 C 0.030 3.970 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.267 0.733 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.029 0.971 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 6.904 -3.932 7.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 C -0.063 4.063 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.128 4.128 8 C -0.042 4.042 9 C -0.130 4.130 10 C 0.262 3.738 11 O -0.488 6.488 12 N -0.149 5.149 13 C -0.450 4.450 14 H 0.103 0.897 15 C -0.154 4.154 16 N -0.499 5.499 17 Si 0.738 3.262 18 H -0.207 1.207 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.015 4.015 22 C -0.023 4.023 23 O -0.280 6.280 24 C -0.067 4.067 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.078 0.922 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.048 0.952 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.020 6.599 -4.147 7.794 hybrid contribution -0.209 0.156 0.934 0.970 sum -0.189 6.755 -3.213 7.483 Atomic orbital electron populations 1.21727 0.95000 1.01643 1.01670 1.20562 0.95802 0.92904 1.03354 1.19703 0.98303 0.95794 0.92518 1.20910 1.00766 0.95159 0.97180 1.20945 1.01387 0.95008 0.97598 1.20959 1.01535 0.99523 0.92733 1.20955 0.99256 0.94864 0.97727 1.19473 0.97039 0.93476 0.94175 1.20536 0.99361 0.99498 0.93644 1.20181 0.88850 0.83914 0.80811 1.90542 1.31240 1.69113 1.57920 1.43315 1.08193 1.42933 1.20452 1.19223 0.94372 0.97802 1.33635 0.89658 1.25160 0.97858 0.94216 0.98137 1.69907 1.43299 0.98187 1.38518 0.86210 0.80248 0.78273 0.81474 1.20712 1.20936 1.19358 1.21500 0.87767 0.97299 0.94963 1.23023 0.92698 0.98958 0.87632 1.88162 1.41670 1.67331 1.30791 1.22642 0.97976 0.93503 0.92574 0.92237 0.93213 0.92465 0.91728 0.89865 0.86757 0.86889 0.86837 0.86678 0.89784 0.88158 0.92249 0.86563 0.91095 0.94396 0.94498 0.90472 0.95237 0.95055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.72 37.16 0.36 -1.74 16 2 C -0.09 -1.52 5.38 -27.88 -0.15 -1.67 16 3 C -0.06 -1.12 5.13 -104.62 -0.54 -1.66 16 4 C -0.12 -1.91 9.68 -39.58 -0.38 -2.29 16 5 C -0.13 -1.91 10.05 -39.59 -0.40 -2.31 16 6 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 7 C -0.11 -1.89 9.68 -39.58 -0.38 -2.27 16 8 C -0.04 -0.78 4.37 -104.63 -0.46 -1.23 16 9 C -0.09 -1.84 3.75 -29.03 -0.11 -1.95 16 10 C 0.47 11.39 6.82 -10.98 -0.07 11.31 16 11 O -0.60 -15.81 15.59 5.55 0.09 -15.73 16 12 N -0.43 -10.72 2.52 -114.81 -0.29 -11.01 16 13 C -0.32 -8.10 8.13 -14.93 -0.12 -8.23 16 14 H 0.09 2.07 7.11 -52.48 -0.37 1.69 16 15 C 0.05 1.30 4.96 -17.47 -0.09 1.21 16 16 N -0.86 -22.65 11.34 55.50 0.63 -22.02 16 17 Si 0.91 19.95 29.61 -169.99 -5.03 14.91 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 C 0.11 2.60 5.47 -4.05 -0.02 2.58 16 22 C 0.05 1.15 6.28 37.16 0.23 1.38 16 23 O -0.36 -7.74 10.18 -35.23 -0.36 -8.10 16 24 C 0.03 0.49 11.01 101.05 1.11 1.60 16 25 H 0.06 0.90 6.80 -51.93 -0.35 0.55 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 29 H 0.08 1.70 6.42 -51.93 -0.33 1.36 16 30 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 32 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 33 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.08 1.60 7.84 -51.93 -0.41 1.19 16 35 H 0.10 2.01 5.43 -51.93 -0.28 1.73 16 36 H 0.27 6.68 8.31 -40.82 -0.34 6.35 16 37 H 0.12 2.99 5.37 -51.93 -0.28 2.71 16 38 H 0.07 1.72 7.36 -51.93 -0.38 1.34 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -29.72 352.96 -7.67 -37.40 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.61 Total: 6.84 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.41 Total: -7.61 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.34 Total: -33.03 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.27 Total: -23.83 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.72 -7.67 -37.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.012 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds