Wall clock time and date at job start Tue Mar 31 2020 07:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50709 * 109.46911 * 2 1 4 4 C 1.38262 * 119.99794 * 265.02725 * 3 2 1 5 5 C 1.38209 * 119.99516 * 179.97438 * 4 3 2 6 6 C 1.38251 * 120.00154 * 359.73712 * 5 4 3 7 7 C 1.38216 * 120.00208 * 0.51493 * 6 5 4 8 8 C 1.38207 * 119.99749 * 84.99993 * 3 2 1 9 9 C 1.50697 * 120.00219 * 0.02562 * 8 3 2 10 10 C 1.50706 * 109.47042 * 85.02311 * 9 8 3 11 11 O 1.21290 * 119.99826 * 2.93559 * 10 9 8 12 12 N 1.34773 * 120.00021 * 182.93447 * 10 9 8 13 13 C 1.37099 * 120.00024 * 4.99784 * 12 10 9 14 14 H 1.08007 * 119.99829 * 324.86422 * 13 12 10 15 15 C 1.38947 * 120.00401 * 144.85823 * 13 12 10 16 16 N 1.31412 * 119.99892 * 337.84900 * 15 13 12 17 17 Si 1.86802 * 120.00273 * 157.83805 * 15 13 12 18 18 H 1.48504 * 109.46645 * 90.00242 * 17 15 13 19 19 H 1.48498 * 109.47612 * 210.00653 * 17 15 13 20 20 H 1.48508 * 109.46929 * 330.00788 * 17 15 13 21 21 C 1.46492 * 120.00229 * 184.99207 * 12 10 9 22 22 C 1.52999 * 109.47167 * 90.00293 * 21 12 10 23 23 O 1.42899 * 109.47177 * 65.00311 * 22 21 12 24 24 C 1.42898 * 114.00108 * 180.02562 * 23 22 21 25 25 H 1.09002 * 109.47090 * 299.99615 * 1 2 3 26 26 H 1.08998 * 109.47689 * 60.00455 * 1 2 3 27 27 H 1.09004 * 109.46795 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47090 * 240.00385 * 2 1 3 29 29 H 1.08998 * 109.47689 * 119.99545 * 2 1 3 30 30 H 1.07995 * 119.99952 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.99373 * 180.02562 * 5 4 3 32 32 H 1.08003 * 120.00078 * 180.27777 * 6 5 4 33 33 H 1.08000 * 120.00080 * 179.75951 * 7 6 5 34 34 H 1.09001 * 109.46990 * 205.02265 * 9 8 3 35 35 H 1.08991 * 109.47287 * 325.01887 * 9 8 3 36 36 H 0.97001 * 120.00020 * 178.66182 * 16 15 13 37 37 H 1.08999 * 109.47222 * 210.00563 * 21 12 10 38 38 H 1.09003 * 109.46869 * 330.00348 * 21 12 10 39 39 H 1.09000 * 109.46874 * 185.00029 * 22 21 12 40 40 H 1.08998 * 109.47073 * 305.00056 * 22 21 12 41 41 H 1.08995 * 109.47259 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.46844 * 299.99860 * 24 23 22 43 43 H 1.08996 * 109.47494 * 59.99569 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0381 -1.1929 5 6 2.8207 3.3413 -1.1929 6 6 2.9475 4.0296 -0.0006 7 6 2.6243 3.4109 1.1923 8 6 2.1642 2.1072 1.1924 9 6 1.8064 1.4345 2.4925 10 6 2.9863 0.6383 2.9876 11 8 4.0333 0.6617 2.3757 12 7 2.8781 -0.0996 4.1101 13 6 1.6679 -0.2084 4.7450 14 1 0.9887 0.6313 4.7603 15 6 1.3148 -1.3988 5.3685 16 7 1.8888 -2.5247 5.0081 17 14 0.0246 -1.3989 6.7194 18 1 -1.3189 -1.6031 6.1205 19 1 0.3113 -2.4963 7.6779 20 1 0.0555 -0.0972 7.4335 21 6 4.0536 -0.7857 4.6519 22 6 4.7752 0.1382 5.6351 23 8 3.9313 0.3883 6.7608 24 6 4.5134 1.2458 7.7446 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 2.2574 1.5018 -2.1246 31 1 3.0767 3.8235 -2.1248 32 1 3.3029 5.0495 -0.0010 33 1 2.7272 3.9474 2.1240 34 1 1.5421 2.1904 3.2320 35 1 0.9585 0.7679 2.3354 36 1 1.6565 -3.3528 5.4567 37 1 3.7391 -1.6921 5.1691 38 1 4.7288 -1.0479 3.8373 39 1 5.6970 -0.3371 5.9705 40 1 5.0113 1.0809 5.1414 41 1 3.8109 1.3858 8.5661 42 1 5.4300 0.7939 8.1238 43 1 4.7438 2.2114 7.2944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:41 Heat of formation + Delta-G solvation = -76.167402 kcal Electronic energy + Delta-G solvation = -24155.062974 eV Core-core repulsion = 20778.604147 eV Total energy + Delta-G solvation = -3376.458827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05919 -39.83826 -38.49418 -36.53471 -35.12073 -33.47043 -33.40613 -31.10681 -30.27258 -28.28616 -27.25610 -26.41066 -24.69634 -23.84401 -22.65866 -21.42582 -20.80327 -18.72145 -17.95215 -17.21987 -17.12079 -16.93347 -16.75665 -16.16145 -16.10829 -15.77461 -15.60743 -14.97966 -14.70728 -14.50156 -14.28200 -13.83906 -13.76565 -13.59175 -13.40967 -12.99200 -12.88946 -12.87517 -12.61423 -12.54868 -12.50422 -12.41915 -12.10017 -12.05638 -11.79089 -11.60345 -11.46744 -10.99876 -10.53209 -10.35195 -9.60419 -9.43282 -9.33685 -8.21660 -5.92563 0.55625 0.59143 1.43365 1.50856 1.61927 2.05605 2.38822 2.82494 3.00958 3.11453 3.30855 3.88766 3.94784 4.12407 4.19101 4.24222 4.28822 4.35302 4.45338 4.50792 4.52486 4.55013 4.62081 4.63673 4.67753 4.73224 4.80085 4.82558 4.85851 4.91327 5.05416 5.14357 5.22046 5.34653 5.38391 5.42596 5.56562 5.67504 5.68925 5.90534 6.04435 6.24334 6.41829 6.47736 7.22420 7.66523 8.07846 8.80839 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.005610 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.019778 B = 4990.257506 C = 5939.822394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.127 4.127 5 C -0.125 4.125 6 C -0.129 4.129 7 C -0.126 4.126 8 C -0.071 4.071 9 C -0.078 4.078 10 C 0.466 3.534 11 O -0.630 6.630 12 N -0.441 5.441 13 C -0.332 4.332 14 H 0.090 0.910 15 C 0.013 3.987 16 N -0.892 5.892 17 Si 0.972 3.028 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.106 3.894 22 C 0.067 3.933 23 O -0.393 6.393 24 C 0.024 3.976 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.139 0.861 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.268 0.732 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.093 0.907 42 H 0.051 0.949 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 8.568 -4.469 9.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.145 4.145 5 C -0.143 4.143 6 C -0.147 4.147 7 C -0.144 4.144 8 C -0.071 4.071 9 C -0.118 4.118 10 C 0.256 3.744 11 O -0.518 6.518 12 N -0.159 5.159 13 C -0.459 4.459 14 H 0.108 0.892 15 C -0.189 4.189 16 N -0.531 5.531 17 Si 0.796 3.204 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.018 4.018 22 C -0.010 4.010 23 O -0.312 6.312 24 C -0.072 4.072 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.137 0.863 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.111 0.889 42 H 0.069 0.931 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.426 8.274 -4.674 9.512 hybrid contribution -0.003 -0.332 1.052 1.104 sum -0.429 7.942 -3.622 8.739 Atomic orbital electron populations 1.21677 0.93308 1.02158 1.02203 1.20500 0.97324 0.92734 1.01760 1.19874 0.99176 0.95951 0.93211 1.21244 1.00084 0.95949 0.97230 1.21409 0.99497 0.94474 0.98925 1.21345 1.00424 1.00905 0.92042 1.21162 0.99641 0.94498 0.99139 1.19487 0.99398 0.94556 0.93674 1.20392 0.97386 0.99027 0.94946 1.20822 0.89576 0.83767 0.80222 1.90494 1.32619 1.70084 1.58625 1.43531 1.08473 1.43018 1.20871 1.19449 0.94627 0.98102 1.33768 0.89208 1.25891 0.99700 0.93710 0.99597 1.70006 1.44869 0.98702 1.39490 0.85277 0.78243 0.78084 0.78762 1.19819 1.21058 1.19008 1.21438 0.87656 0.97617 0.95112 1.22778 0.93004 0.97949 0.87302 1.88089 1.42981 1.68639 1.31513 1.22886 0.99272 0.93227 0.91817 0.93303 0.90959 0.91954 0.90406 0.94231 0.84295 0.83225 0.83752 0.86286 0.89140 0.88668 0.92190 0.88359 0.92606 0.91740 0.95284 0.88871 0.93071 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.72 71.98 0.70 -3.26 16 2 C -0.09 -2.97 5.38 29.85 0.16 -2.81 16 3 C -0.08 -2.88 5.13 -19.86 -0.10 -2.99 16 4 C -0.13 -3.69 9.68 22.27 0.22 -3.47 16 5 C -0.13 -3.23 10.05 22.27 0.22 -3.00 16 6 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 7 C -0.13 -4.25 9.68 22.27 0.22 -4.03 16 8 C -0.07 -2.69 4.37 -19.87 -0.09 -2.77 16 9 C -0.08 -3.27 3.75 29.10 0.11 -3.16 16 10 C 0.47 23.28 6.82 87.66 0.60 23.88 16 11 O -0.63 -34.41 15.59 -3.06 -0.05 -34.45 16 12 N -0.44 -22.73 2.52 -635.55 -1.60 -24.33 16 13 C -0.33 -17.03 8.13 84.04 0.68 -16.35 16 14 H 0.09 4.42 7.11 -2.91 -0.02 4.40 16 15 C 0.01 0.69 4.96 84.93 0.42 1.11 16 16 N -0.89 -48.12 11.34 21.66 0.25 -47.88 16 17 Si 0.97 40.98 29.61 68.60 2.03 43.01 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 21 C 0.11 5.26 5.47 86.38 0.47 5.73 16 22 C 0.07 2.84 6.28 71.98 0.45 3.29 16 23 O -0.39 -16.68 10.18 -148.98 -1.52 -18.19 16 24 C 0.02 0.74 11.01 113.37 1.25 1.99 16 25 H 0.05 1.50 6.80 -2.39 -0.02 1.48 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 2.39 8.05 -2.39 -0.02 2.37 16 29 H 0.04 1.69 6.42 -2.39 -0.02 1.68 16 30 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 34 H 0.09 3.54 7.84 -2.39 -0.02 3.53 16 35 H 0.10 4.00 5.43 -2.39 -0.01 3.99 16 36 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 37 H 0.10 5.26 5.37 -2.39 -0.01 5.25 16 38 H 0.06 2.86 7.36 -2.39 -0.02 2.84 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -65.53 352.96 5.64 -59.90 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.99 Total: 31.12 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 5.54 Total: -9.18 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.35 Total: -72.21 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -1.56 Total: -52.65 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -65.53 5.64 -59.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.271 kcal (2) G-P(sol) polarization free energy of solvation -65.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds