Wall clock time and date at job start Tue Mar 31 2020 07:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50707 * 109.46978 * 2 1 4 4 C 1.38544 * 119.84963 * 270.02501 * 3 2 1 5 5 C 1.38061 * 120.38555 * 179.72620 * 4 3 2 6 6 C 1.38704 * 120.08375 * 0.50733 * 5 4 3 7 7 O 1.35655 * 120.15039 * 179.77211 * 6 5 4 8 8 C 1.40143 * 119.70167 * 359.49551 * 6 5 4 9 9 C 1.47536 * 120.19189 * 180.27297 * 8 6 5 10 10 O 1.21589 * 119.99902 * 0.02562 * 9 8 6 11 11 N 1.34772 * 119.99844 * 179.97438 * 9 8 6 12 12 C 1.46501 * 119.99973 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47078 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46723 * 299.99510 * 13 12 11 15 15 C 1.52997 * 109.47433 * 59.99440 * 13 12 11 16 16 C 1.50701 * 109.47009 * 179.97438 * 13 12 11 17 17 H 1.07997 * 120.00126 * 359.97438 * 16 13 12 18 18 C 1.37875 * 119.99983 * 179.97438 * 16 13 12 19 19 N 1.31521 * 119.99892 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 120.00110 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.46851 * 60.00077 * 20 18 16 22 22 H 1.48495 * 109.47261 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.46999 * 300.00276 * 20 18 16 24 24 C 1.37788 * 119.84405 * 90.00474 * 3 2 1 25 25 H 1.08995 * 109.48043 * 59.99648 * 1 2 3 26 26 H 1.08999 * 109.47286 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47445 * 299.99236 * 1 2 3 28 28 H 1.09007 * 109.47445 * 240.00764 * 2 1 3 29 29 H 1.08999 * 109.47788 * 120.00801 * 2 1 3 30 30 H 1.07998 * 119.80731 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.95311 * 180.25702 * 5 4 3 32 32 H 0.96696 * 114.00102 * 269.72337 * 7 6 5 33 33 H 0.97005 * 120.00194 * 0.02562 * 11 9 8 34 34 H 1.09003 * 109.46978 * 299.99877 * 12 11 9 35 35 H 1.08995 * 109.47066 * 59.99760 * 12 11 9 36 36 H 1.08998 * 109.47347 * 60.00158 * 14 13 12 37 37 H 1.09002 * 109.47087 * 180.02562 * 14 13 12 38 38 H 1.09004 * 109.47429 * 300.00006 * 14 13 12 39 39 H 1.09003 * 109.47063 * 60.00320 * 15 13 12 40 40 H 1.09002 * 109.46917 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47500 * 300.00360 * 15 13 12 42 42 H 0.96998 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.04653 * 0.04342 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2616 2.0712 -1.2016 5 6 2.7163 3.3747 -1.2146 6 6 2.9569 4.0390 -0.0209 7 8 3.4082 5.3182 -0.0321 8 6 2.7261 3.3847 1.1967 9 6 2.9726 4.0830 2.4727 10 8 3.3767 5.2298 2.4698 11 7 2.7489 3.4502 3.6413 12 6 2.9931 4.1439 4.9084 13 6 2.6634 3.2087 6.0736 14 6 1.1927 2.7942 5.9943 15 6 3.5490 1.9636 5.9947 16 6 2.9152 3.9220 7.3770 17 1 3.2749 4.9403 7.3745 18 6 2.6864 3.2746 8.5726 19 7 2.2479 2.0346 8.5756 20 14 2.9992 4.1585 10.1882 21 1 2.1408 5.3678 10.2651 22 1 2.6791 3.2509 11.3191 23 1 4.4270 4.5594 10.2647 24 6 2.2609 2.0673 1.1951 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.0797 1.5568 -2.1337 31 1 2.8888 3.8763 -2.1553 32 1 4.3720 5.3953 -0.0354 33 1 2.4261 2.5354 3.6436 34 1 4.0409 4.4388 4.9651 35 1 2.3624 5.0310 4.9644 36 1 1.0109 2.2782 5.0516 37 1 0.9576 2.1283 6.8247 38 1 0.5616 3.6812 6.0505 39 1 4.5968 2.2589 6.0512 40 1 3.3137 1.2972 6.8246 41 1 3.3673 1.4475 5.0520 42 1 2.0873 1.5791 9.4167 43 1 2.0810 1.5563 2.1294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457987070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:19 Heat of formation + Delta-G solvation = -89.366611 kcal Electronic energy + Delta-G solvation = -23418.360746 eV Core-core repulsion = 20041.329558 eV Total energy + Delta-G solvation = -3377.031188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.51919 -39.85777 -38.26423 -37.87089 -35.06550 -34.27641 -33.06633 -31.87899 -29.57039 -27.59495 -27.54567 -26.92467 -24.71048 -24.54998 -22.43486 -21.24978 -20.62670 -19.49215 -18.46738 -17.72199 -17.26800 -16.69686 -16.53822 -16.16866 -16.09393 -15.75830 -15.16314 -14.82236 -14.70318 -14.51815 -14.35347 -14.03716 -13.94315 -13.49174 -13.21689 -13.11601 -13.09249 -12.69956 -12.63475 -12.44203 -12.26960 -12.15951 -12.06398 -11.75498 -11.65691 -11.51402 -11.29157 -10.80443 -10.68402 -10.40842 -10.16235 -9.89401 -9.46129 -8.03077 -6.18933 -0.20753 0.24534 1.44039 1.45005 1.51783 1.87125 2.24814 2.48392 2.71238 3.20454 3.27507 3.66887 3.77493 3.87910 4.26353 4.32152 4.40471 4.45982 4.47470 4.57464 4.64265 4.66973 4.80575 4.94797 4.96458 5.01840 5.06466 5.10365 5.15941 5.16122 5.23911 5.32117 5.32876 5.45315 5.54262 5.59025 5.64352 5.65900 5.80715 6.12062 6.18517 6.41643 6.61261 6.81207 6.84129 7.25312 7.48611 8.95875 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.003873 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.659477 B = 7227.626273 C = 8295.416603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.099 4.099 4 C -0.066 4.066 5 C -0.150 4.150 6 C 0.141 3.859 7 O -0.498 6.498 8 C -0.182 4.182 9 C 0.543 3.457 10 O -0.574 6.574 11 N -0.707 5.707 12 C 0.148 3.852 13 C 0.051 3.949 14 C -0.120 4.120 15 C -0.119 4.119 16 C -0.531 4.531 17 H 0.044 0.956 18 C 0.030 3.970 19 N -0.898 5.898 20 Si 0.946 3.054 21 H -0.278 1.278 22 H -0.281 1.281 23 H -0.277 1.277 24 C -0.074 4.074 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.404 0.596 33 H 0.406 0.594 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.034 0.966 37 H 0.066 0.934 38 H 0.016 0.984 39 H 0.018 0.982 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.261 0.739 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 -7.200 -20.754 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.084 4.084 5 C -0.168 4.168 6 C 0.095 3.905 7 O -0.310 6.310 8 C -0.186 4.186 9 C 0.332 3.668 10 O -0.455 6.455 11 N -0.359 5.359 12 C 0.025 3.975 13 C 0.051 3.949 14 C -0.178 4.178 15 C -0.177 4.177 16 C -0.570 4.570 17 H 0.062 0.938 18 C -0.170 4.170 19 N -0.536 5.536 20 Si 0.772 3.228 21 H -0.204 1.204 22 H -0.206 1.206 23 H -0.202 1.202 24 C -0.093 4.093 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.184 0.816 31 H 0.175 0.825 32 H 0.264 0.736 33 H 0.244 0.756 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.383 -6.395 -20.573 21.589 hybrid contribution 0.601 0.467 1.510 1.691 sum -0.781 -5.929 -19.064 19.980 Atomic orbital electron populations 1.21779 0.94414 1.02569 1.01906 1.20611 0.96307 0.90588 1.04433 1.20148 0.99583 0.98002 0.92145 1.21496 0.94693 0.93319 0.98910 1.21648 1.02440 0.95418 0.97332 1.18819 0.96474 0.83807 0.91412 1.84699 1.28323 1.21866 1.96155 1.20422 1.09276 0.96262 0.92603 1.18665 0.77646 0.85950 0.84571 1.90733 1.47792 1.18837 1.88159 1.46065 1.66654 1.17788 1.05358 1.21309 0.98547 0.95231 0.82462 1.18360 0.93357 0.92400 0.90798 1.21675 0.96892 0.99476 0.99773 1.21663 0.97315 0.98951 0.99796 1.21222 1.45064 0.99143 0.91538 0.93794 1.25438 0.94683 0.95552 1.01309 1.69893 1.45575 1.11361 1.26816 0.85813 0.78449 0.78553 0.79969 1.20365 1.20650 1.20249 1.21293 0.96372 0.91943 0.99707 0.92139 0.90997 0.93792 0.88570 0.90535 0.81624 0.82482 0.73639 0.75633 0.94138 0.94525 0.94719 0.91568 0.96448 0.96233 0.91634 0.94648 0.92943 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.08 -1.02 6.05 29.85 0.18 -0.84 16 3 C -0.10 -1.73 5.13 -19.90 -0.10 -1.83 16 4 C -0.07 -0.98 9.68 22.30 0.22 -0.77 16 5 C -0.15 -2.78 9.98 22.34 0.22 -2.56 16 6 C 0.14 3.78 6.72 22.84 0.15 3.94 16 7 O -0.50 -14.41 11.58 -68.78 -0.80 -15.21 16 8 C -0.18 -5.43 5.89 -20.01 -0.12 -5.55 16 9 C 0.54 20.68 7.76 86.70 0.67 21.36 16 10 O -0.57 -25.91 15.16 16.92 0.26 -25.66 16 11 N -0.71 -26.48 4.91 -466.27 -2.29 -28.77 16 12 C 0.15 6.62 4.50 86.38 0.39 7.01 16 13 C 0.05 2.43 0.50 -52.93 -0.03 2.41 16 14 C -0.12 -5.46 8.08 71.98 0.58 -4.88 16 15 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 16 C -0.53 -28.51 8.01 25.60 0.21 -28.31 16 17 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 18 C 0.03 1.60 5.15 84.65 0.44 2.03 16 19 N -0.90 -47.87 9.35 21.45 0.20 -47.67 16 20 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 24 C -0.07 -1.75 9.18 22.52 0.21 -1.54 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.10 0.79 8.08 -2.38 -0.02 0.77 16 29 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 30 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 31 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.40 8.71 9.06 -74.06 -0.67 8.04 16 33 H 0.41 13.30 4.19 -92.70 -0.39 12.91 16 34 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 37 H 0.07 3.30 6.07 -2.39 -0.01 3.28 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 41 H 0.03 1.33 6.86 -2.39 -0.02 1.31 16 42 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 43 H 0.13 2.92 6.40 -2.91 -0.02 2.91 16 Total: -1.00 -66.59 347.30 3.68 -62.91 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -0.03 Total: 25.01 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 4.31 Total: -15.49 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -2.09 Total: -76.44 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -0.54 Total: -40.86 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -66.59 3.68 -62.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.455 kcal (2) G-P(sol) polarization free energy of solvation -66.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds