Wall clock time and date at job start Tue Mar 31 2020 06:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35710 * 116.99837 * 2 1 4 4 C 1.39018 * 119.91351 * 0.02562 * 3 2 1 5 5 C 1.37673 * 120.09136 * 179.97438 * 4 3 2 6 6 C 1.39752 * 119.91118 * 0.02695 * 5 4 3 7 7 C 1.47609 * 120.08961 * 179.97438 * 6 5 4 8 8 O 1.21580 * 120.00173 * 173.73201 * 7 6 5 9 9 N 1.34775 * 119.99559 * 353.73635 * 7 6 5 10 10 C 1.46505 * 119.99905 * 179.97438 * 9 7 6 11 11 C 1.52990 * 109.47196 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47519 * 300.00282 * 11 10 9 13 13 C 1.52999 * 109.47238 * 60.00353 * 11 10 9 14 14 C 1.50699 * 109.47044 * 180.02562 * 11 10 9 15 15 H 1.07997 * 120.00210 * 0.02562 * 14 11 10 16 16 C 1.37886 * 120.00114 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99678 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99929 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47073 * 60.00036 * 18 16 14 20 20 H 1.48504 * 109.46776 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47050 * 299.99791 * 18 16 14 22 22 C 1.39714 * 119.82620 * 359.97438 * 6 5 4 23 23 C 1.50702 * 120.04709 * 180.02562 * 22 6 5 24 24 C 1.37719 * 119.90820 * 359.72964 * 22 6 5 25 25 H 1.08989 * 109.47354 * 60.00335 * 1 2 3 26 26 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47176 * 299.99568 * 1 2 3 28 28 H 1.08002 * 119.95431 * 359.97438 * 4 3 2 29 29 H 1.08000 * 120.04906 * 179.97438 * 5 4 3 30 30 H 0.97000 * 120.00214 * 359.97438 * 9 7 6 31 31 H 1.09000 * 109.46689 * 299.99896 * 10 9 7 32 32 H 1.09005 * 109.47031 * 59.99247 * 10 9 7 33 33 H 1.08996 * 109.47574 * 59.99729 * 12 11 10 34 34 H 1.09000 * 109.47335 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.47023 * 299.99761 * 12 11 10 36 36 H 1.09000 * 109.47116 * 59.99158 * 13 11 10 37 37 H 1.09000 * 109.47740 * 179.97438 * 13 11 10 38 38 H 1.09005 * 109.47073 * 299.99807 * 13 11 10 39 39 H 0.97002 * 119.99711 * 179.97438 * 17 16 14 40 40 H 1.08991 * 109.46931 * 83.38868 * 23 22 6 41 41 H 1.09000 * 109.47045 * 203.38990 * 23 22 6 42 42 H 1.08997 * 109.47094 * 323.39106 * 23 22 6 43 43 H 1.08000 * 119.95801 * 180.29955 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2861 2.3739 0.0005 5 6 1.9073 3.6026 0.0011 6 6 3.3028 3.6779 0.0005 7 6 3.9729 4.9931 0.0005 8 8 5.1815 5.0597 0.1150 9 7 3.2449 6.1203 -0.1263 10 6 3.9099 7.4257 -0.1257 11 6 2.8638 8.5309 -0.2832 12 6 2.1153 8.3404 -1.6039 13 6 1.8716 8.4636 0.8795 14 6 3.5479 9.8737 -0.2833 15 1 4.6214 9.9328 -0.1816 16 6 2.8032 11.0269 -0.4131 17 7 1.4959 10.9548 -0.5374 18 14 3.6511 12.6913 -0.4125 19 1 4.6137 12.7569 -1.5413 20 1 2.6357 13.7642 -0.5654 21 1 4.3779 12.8761 0.8693 22 6 4.0620 2.5051 -0.0001 23 6 5.5671 2.5805 -0.0001 24 6 3.4330 1.2799 0.0056 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.2077 2.3149 0.0005 29 1 1.3170 4.5070 0.0011 30 1 2.2807 6.0672 -0.2179 31 1 4.4434 7.5612 0.8151 32 1 4.6165 7.4739 -0.9543 33 1 1.6205 7.3692 -1.6044 34 1 1.3703 9.1281 -1.7163 35 1 2.8221 8.3885 -2.4323 36 1 2.4049 8.5992 1.8205 37 1 1.1266 9.2513 0.7677 38 1 1.3768 7.4923 0.8792 39 1 0.9719 11.7661 -0.6284 40 1 5.9241 2.7164 1.0207 41 1 5.9772 1.6569 -0.4085 42 1 5.8887 3.4229 -0.6126 43 1 4.0192 0.3728 0.0100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457987078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:38 Heat of formation + Delta-G solvation = -56.681292 kcal Electronic energy + Delta-G solvation = -23243.259618 eV Core-core repulsion = 19867.645772 eV Total energy + Delta-G solvation = -3375.613846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.56408 -39.30873 -37.34813 -36.25000 -33.61289 -32.32768 -31.18386 -30.37725 -28.00043 -26.68657 -25.73904 -25.59348 -24.87571 -23.27917 -21.41860 -20.20573 -18.79745 -17.97960 -17.44449 -16.53781 -16.02404 -15.84208 -15.09529 -14.84587 -14.83729 -14.50675 -14.06851 -13.49918 -13.44348 -13.31587 -12.91488 -12.66773 -12.61723 -12.30958 -12.20780 -12.07176 -11.85114 -11.38789 -11.20295 -11.10583 -10.96792 -10.84510 -10.73105 -10.39153 -10.20347 -9.64219 -9.44101 -9.16538 -8.93091 -8.80137 -8.53078 -8.38803 -8.16960 -6.02685 -4.12728 0.93472 1.21998 2.98679 3.08593 3.29957 3.34166 3.37653 3.75998 3.91751 4.39924 4.55323 4.68275 4.82416 4.86177 5.00246 5.08819 5.17099 5.24076 5.24964 5.40962 5.71802 5.83239 5.91371 5.98437 6.15808 6.18926 6.28719 6.33078 6.50317 6.54066 6.62709 6.79563 6.80687 6.93567 7.01242 7.04874 7.14289 7.34852 7.54520 7.68655 7.99954 8.05698 8.15551 8.37919 8.71277 8.87929 9.53039 10.98737 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.003366 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.683237 B = 8317.250931 C = 9127.749430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.149 3.851 4 C -0.224 4.224 5 C -0.041 4.041 6 C -0.170 4.170 7 C 0.550 3.450 8 O -0.546 6.546 9 N -0.712 5.712 10 C 0.132 3.868 11 C 0.056 3.944 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.507 4.507 15 H 0.057 0.943 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.014 3.986 23 C -0.120 4.120 24 C -0.167 4.167 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.396 0.604 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.005 0.995 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.086 0.914 38 H 0.005 0.995 39 H 0.260 0.740 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.101 0.899 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 -18.949 0.631 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.103 3.897 4 C -0.242 4.242 5 C -0.059 4.059 6 C -0.174 4.174 7 C 0.337 3.663 8 O -0.426 6.426 9 N -0.363 5.363 10 C 0.010 3.990 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.188 4.188 14 C -0.545 4.545 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.013 3.987 23 C -0.176 4.176 24 C -0.186 4.186 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.076 0.924 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.232 0.768 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.024 0.976 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.731 -18.919 0.687 19.128 hybrid contribution -0.529 1.032 -0.021 1.160 sum -3.260 -17.887 0.666 18.194 Atomic orbital electron populations 1.23097 0.78161 1.03994 1.01697 1.86023 1.21618 1.27061 1.88213 1.19224 0.92295 0.84076 0.94061 1.21119 1.00185 0.92002 1.10918 1.21145 0.93466 0.97568 0.93764 1.19892 0.93412 0.93882 1.10173 1.18120 0.86938 0.83949 0.77263 1.90682 1.13776 1.87202 1.50952 1.46262 1.10943 1.06697 1.72398 1.21734 0.96403 0.80276 1.00596 1.18349 0.91476 0.91908 0.92739 1.21832 1.00815 0.98468 0.97735 1.21833 1.00683 0.98614 0.97704 1.20953 0.93467 0.89830 1.50275 0.92448 1.24880 0.94842 0.98983 0.94773 1.69792 1.04686 1.28123 1.49890 0.86627 0.79177 0.83350 0.78673 1.20273 1.21339 1.20270 1.19826 0.96873 0.90518 0.91471 1.21106 0.89398 1.03158 1.03977 1.20243 0.91101 0.98110 1.09097 0.92378 0.88204 0.92403 0.84993 0.85130 0.76810 0.92585 0.92591 0.97608 0.89577 0.95391 0.95389 0.89570 0.97641 0.92954 0.90426 0.92567 0.88086 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.31 10.48 -18.83 -0.20 -3.50 16 3 C 0.15 1.75 6.70 -39.02 -0.26 1.49 16 4 C -0.22 -2.50 9.01 -39.50 -0.36 -2.86 16 5 C -0.04 -0.52 9.51 -39.22 -0.37 -0.89 16 6 C -0.17 -2.56 5.88 -104.96 -0.62 -3.18 16 7 C 0.55 9.90 7.69 -12.44 -0.10 9.81 16 8 O -0.55 -11.12 13.33 5.29 0.07 -11.05 16 9 N -0.71 -12.95 4.91 -61.33 -0.30 -13.25 16 10 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 11 C 0.06 1.29 0.50 -155.67 -0.08 1.21 16 12 C -0.13 -2.94 8.08 37.15 0.30 -2.64 16 13 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 14 C -0.51 -13.23 8.01 -34.44 -0.28 -13.51 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 17 N -0.89 -23.49 9.35 55.43 0.52 -22.97 16 18 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.01 0.20 5.91 -104.26 -0.62 -0.42 16 23 C -0.12 -1.59 8.72 36.01 0.31 -1.28 16 24 C -0.17 -2.04 9.60 -39.50 -0.38 -2.42 16 25 H 0.06 0.34 7.65 -51.94 -0.40 -0.06 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.33 7.65 -51.93 -0.40 -0.06 16 28 H 0.13 1.13 6.28 -52.49 -0.33 0.80 16 29 H 0.13 1.50 6.44 -52.49 -0.34 1.16 16 30 H 0.40 6.51 4.22 -40.82 -0.17 6.34 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 34 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 38 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 39 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.59 8.04 -51.93 -0.42 0.18 16 42 H 0.10 1.57 5.85 -51.93 -0.30 1.26 16 43 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 341.04 15.07 5.14 5.14 Total: -1.00 -28.85 341.04 -7.25 -36.10 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.20 Total: 5.58 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.26 Total: -11.70 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.22 Total: -36.22 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.13 Total: -14.55 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.85 -7.25 -36.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.581 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds