Wall clock time and date at job start Tue Mar 31 2020 06:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35710 * 116.99837 * 2 1 4 4 C 1.39018 * 119.91351 * 0.02562 * 3 2 1 5 5 C 1.37673 * 120.09136 * 179.97438 * 4 3 2 6 6 C 1.39752 * 119.91118 * 0.02695 * 5 4 3 7 7 C 1.47609 * 120.08961 * 179.97438 * 6 5 4 8 8 O 1.21580 * 120.00173 * 173.73201 * 7 6 5 9 9 N 1.34775 * 119.99559 * 353.73635 * 7 6 5 10 10 C 1.46505 * 119.99905 * 179.97438 * 9 7 6 11 11 C 1.52990 * 109.47196 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47519 * 300.00282 * 11 10 9 13 13 C 1.52999 * 109.47238 * 60.00353 * 11 10 9 14 14 C 1.50699 * 109.47044 * 180.02562 * 11 10 9 15 15 H 1.07997 * 120.00210 * 0.02562 * 14 11 10 16 16 C 1.37886 * 120.00114 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99678 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99929 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47073 * 60.00036 * 18 16 14 20 20 H 1.48504 * 109.46776 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47050 * 299.99791 * 18 16 14 22 22 C 1.39714 * 119.82620 * 359.97438 * 6 5 4 23 23 C 1.50702 * 120.04709 * 180.02562 * 22 6 5 24 24 C 1.37719 * 119.90820 * 359.72964 * 22 6 5 25 25 H 1.08989 * 109.47354 * 60.00335 * 1 2 3 26 26 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47176 * 299.99568 * 1 2 3 28 28 H 1.08002 * 119.95431 * 359.97438 * 4 3 2 29 29 H 1.08000 * 120.04906 * 179.97438 * 5 4 3 30 30 H 0.97000 * 120.00214 * 359.97438 * 9 7 6 31 31 H 1.09000 * 109.46689 * 299.99896 * 10 9 7 32 32 H 1.09005 * 109.47031 * 59.99247 * 10 9 7 33 33 H 1.08996 * 109.47574 * 59.99729 * 12 11 10 34 34 H 1.09000 * 109.47335 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.47023 * 299.99761 * 12 11 10 36 36 H 1.09000 * 109.47116 * 59.99158 * 13 11 10 37 37 H 1.09000 * 109.47740 * 179.97438 * 13 11 10 38 38 H 1.09005 * 109.47073 * 299.99807 * 13 11 10 39 39 H 0.97002 * 119.99711 * 179.97438 * 17 16 14 40 40 H 1.08991 * 109.46931 * 83.38868 * 23 22 6 41 41 H 1.09000 * 109.47045 * 203.38990 * 23 22 6 42 42 H 1.08997 * 109.47094 * 323.39106 * 23 22 6 43 43 H 1.08000 * 119.95801 * 180.29955 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2861 2.3739 0.0005 5 6 1.9073 3.6026 0.0011 6 6 3.3028 3.6779 0.0005 7 6 3.9729 4.9931 0.0005 8 8 5.1815 5.0597 0.1150 9 7 3.2449 6.1203 -0.1263 10 6 3.9099 7.4257 -0.1257 11 6 2.8638 8.5309 -0.2832 12 6 2.1153 8.3404 -1.6039 13 6 1.8716 8.4636 0.8795 14 6 3.5479 9.8737 -0.2833 15 1 4.6214 9.9328 -0.1816 16 6 2.8032 11.0269 -0.4131 17 7 1.4959 10.9548 -0.5374 18 14 3.6511 12.6913 -0.4125 19 1 4.6137 12.7569 -1.5413 20 1 2.6357 13.7642 -0.5654 21 1 4.3779 12.8761 0.8693 22 6 4.0620 2.5051 -0.0001 23 6 5.5671 2.5805 -0.0001 24 6 3.4330 1.2799 0.0056 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.2077 2.3149 0.0005 29 1 1.3170 4.5070 0.0011 30 1 2.2807 6.0672 -0.2179 31 1 4.4434 7.5612 0.8151 32 1 4.6165 7.4739 -0.9543 33 1 1.6205 7.3692 -1.6044 34 1 1.3703 9.1281 -1.7163 35 1 2.8221 8.3885 -2.4323 36 1 2.4049 8.5992 1.8205 37 1 1.1266 9.2513 0.7677 38 1 1.3768 7.4923 0.8792 39 1 0.9719 11.7661 -0.6284 40 1 5.9241 2.7164 1.0207 41 1 5.9772 1.6569 -0.4085 42 1 5.8887 3.4229 -0.6126 43 1 4.0192 0.3728 0.0100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457987078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:38 Heat of formation + Delta-G solvation = -72.830601 kcal Electronic energy + Delta-G solvation = -23243.959905 eV Core-core repulsion = 19867.645772 eV Total energy + Delta-G solvation = -3376.314132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60131 -40.47934 -38.56021 -37.79296 -35.19970 -33.52364 -32.73227 -31.54229 -28.88817 -27.56995 -27.50227 -27.42068 -26.57856 -24.37220 -22.46728 -21.49937 -20.56990 -18.98397 -18.60434 -17.75109 -17.49024 -16.73702 -16.62533 -16.41829 -16.23301 -15.78182 -15.13046 -14.82984 -14.70431 -14.60069 -14.24386 -14.03069 -13.95889 -13.73089 -13.20104 -13.11824 -13.08855 -12.96313 -12.73606 -12.66588 -12.60694 -12.25143 -12.12818 -11.91942 -11.82392 -11.48658 -11.23389 -10.74600 -10.58464 -10.39362 -9.98950 -9.85686 -9.24742 -8.02096 -6.17773 -0.10608 0.28699 1.44524 1.45589 1.52199 1.88769 2.25483 2.32994 2.50480 2.79826 3.21499 3.69020 3.79561 3.83781 4.08706 4.29066 4.38774 4.43546 4.43996 4.48649 4.51838 4.70442 4.74808 4.77599 4.84245 4.92219 4.99784 5.03804 5.04708 5.12549 5.19149 5.21235 5.24765 5.38085 5.55831 5.60408 5.66255 5.66710 5.67365 6.14737 6.21070 6.34701 6.43493 6.67539 6.85973 7.31095 7.49794 8.96727 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.003366 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.683237 B = 8317.250931 C = 9127.749430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.155 3.845 4 C -0.218 4.218 5 C -0.040 4.040 6 C -0.196 4.196 7 C 0.548 3.452 8 O -0.577 6.577 9 N -0.708 5.708 10 C 0.149 3.851 11 C 0.052 3.948 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.531 4.531 15 H 0.045 0.955 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.945 3.055 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.277 1.277 22 C 0.004 3.996 23 C -0.116 4.116 24 C -0.171 4.171 25 H 0.068 0.932 26 H 0.122 0.878 27 H 0.068 0.932 28 H 0.163 0.837 29 H 0.143 0.857 30 H 0.405 0.595 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.064 0.936 35 H 0.017 0.983 36 H 0.018 0.982 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.261 0.739 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.139 -20.900 0.635 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.108 3.892 4 C -0.237 4.237 5 C -0.059 4.059 6 C -0.199 4.199 7 C 0.338 3.662 8 O -0.459 6.459 9 N -0.359 5.359 10 C 0.025 3.975 11 C 0.051 3.949 12 C -0.178 4.178 13 C -0.178 4.178 14 C -0.570 4.570 15 H 0.063 0.937 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.772 3.228 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.203 1.203 22 C 0.003 3.997 23 C -0.172 4.172 24 C -0.190 4.190 25 H 0.087 0.913 26 H 0.140 0.860 27 H 0.086 0.914 28 H 0.180 0.820 29 H 0.161 0.839 30 H 0.243 0.757 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.400 -20.890 0.689 21.359 hybrid contribution -0.084 1.493 -0.021 1.495 sum -4.484 -19.397 0.668 19.920 Atomic orbital electron populations 1.23448 0.75956 1.05951 1.02688 1.86030 1.23873 1.26286 1.87634 1.19364 0.92322 0.84878 0.92602 1.21406 1.01703 0.91007 1.09543 1.21292 0.92467 0.98895 0.93230 1.19722 0.94549 0.92298 1.13345 1.18631 0.86647 0.84847 0.76104 1.90671 1.15264 1.87767 1.52227 1.46058 1.11315 1.05680 1.72897 1.21288 0.95647 0.81498 0.99036 1.18344 0.91885 0.91234 0.93410 1.21673 0.99956 0.99309 0.96901 1.21673 0.99831 0.99520 0.96810 1.21255 0.93201 0.91751 1.50744 0.93709 1.25444 0.95460 1.01517 0.94645 1.69895 1.05256 1.28630 1.49932 0.85824 0.78350 0.80265 0.78407 1.20295 1.20769 1.20277 1.19914 0.96945 0.90919 0.91897 1.21011 0.89674 1.03312 1.03214 1.20394 0.91862 0.97939 1.08759 0.91334 0.85995 0.91357 0.81989 0.83944 0.75661 0.94215 0.94236 0.94589 0.91751 0.96352 0.96324 0.91757 0.94540 0.92993 0.91029 0.89952 0.90798 0.83107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.69 10.48 -90.31 -0.95 -6.64 16 3 C 0.15 3.18 6.70 22.64 0.15 3.33 16 4 C -0.22 -4.15 9.01 22.32 0.20 -3.95 16 5 C -0.04 -0.93 9.51 22.50 0.21 -0.72 16 6 C -0.20 -5.73 5.88 -20.08 -0.12 -5.85 16 7 C 0.55 19.86 7.69 86.72 0.67 20.52 16 8 O -0.58 -24.27 13.33 -3.97 -0.05 -24.32 16 9 N -0.71 -25.49 4.91 -466.20 -2.29 -27.78 16 10 C 0.15 6.45 4.50 86.37 0.39 6.84 16 11 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 12 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 13 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 14 C -0.53 -28.21 8.01 25.60 0.21 -28.01 16 15 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 16 C 0.03 1.54 5.15 84.66 0.44 1.97 16 17 N -0.90 -47.74 9.35 21.45 0.20 -47.54 16 18 Si 0.94 42.62 29.54 68.60 2.03 44.65 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 C 0.00 0.12 5.91 -19.63 -0.12 0.00 16 23 C -0.12 -3.06 8.72 71.24 0.62 -2.44 16 24 C -0.17 -3.82 9.60 22.33 0.21 -3.60 16 25 H 0.07 0.51 7.65 -2.39 -0.02 0.49 16 26 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.51 7.65 -2.39 -0.02 0.49 16 28 H 0.16 2.04 6.28 -2.91 -0.02 2.03 16 29 H 0.14 2.88 6.44 -2.91 -0.02 2.86 16 30 H 0.41 12.71 4.22 -92.71 -0.39 12.32 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.04 1.34 6.86 -2.39 -0.02 1.32 16 34 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 35 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 38 H 0.04 1.34 6.86 -2.38 -0.02 1.33 16 39 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 1.66 8.04 -2.39 -0.02 1.64 16 42 H 0.07 2.38 5.85 -2.39 -0.01 2.36 16 43 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -62.79 341.04 4.68 -58.11 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.63 Total: 21.36 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 5.11 Total: -17.84 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -2.09 Total: -75.32 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.00 Total: -30.96 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -62.79 4.68 -58.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.721 kcal (2) G-P(sol) polarization free energy of solvation -62.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds