Wall clock time and date at job start Tue Mar 31 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38548 * 119.80455 * 2 1 4 4 C 1.37791 * 120.30094 * 180.02562 * 3 2 1 5 5 C 1.39700 * 119.90476 * 359.97438 * 4 3 2 6 6 C 1.47544 * 120.18699 * 180.02562 * 5 4 3 7 7 O 1.21595 * 119.99434 * 180.02562 * 6 5 4 8 8 N 1.34767 * 119.99984 * 359.97438 * 6 5 4 9 9 C 1.46502 * 119.99819 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47056 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47232 * 299.99767 * 10 9 8 12 12 C 1.52998 * 109.47179 * 60.00277 * 10 9 8 13 13 C 1.50700 * 109.47076 * 179.97438 * 10 9 8 14 14 H 1.08002 * 120.00223 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00194 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99730 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 120.00259 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.46867 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47078 * 119.99906 * 17 15 13 20 20 H 1.48500 * 109.47174 * 239.99646 * 17 15 13 21 21 C 1.40138 * 119.62163 * 359.97438 * 5 4 3 22 22 O 1.35651 * 120.15064 * 180.02562 * 21 5 4 23 23 C 1.38052 * 119.80371 * 179.72700 * 2 1 3 24 24 C 1.50699 * 119.96118 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47152 * 89.99807 * 1 2 3 26 26 H 1.09001 * 109.46980 * 329.99908 * 1 2 3 27 27 H 1.09004 * 109.47113 * 209.99888 * 1 2 3 28 28 H 1.07999 * 119.84927 * 0.02562 * 3 2 1 29 29 H 1.07995 * 120.04481 * 180.02562 * 4 3 2 30 30 H 0.96998 * 120.00695 * 0.02562 * 8 6 5 31 31 H 1.09008 * 109.47229 * 300.00047 * 9 8 6 32 32 H 1.08994 * 109.47469 * 60.00313 * 9 8 6 33 33 H 1.09002 * 109.46672 * 60.00342 * 11 10 9 34 34 H 1.09001 * 109.47358 * 179.97438 * 11 10 9 35 35 H 1.08997 * 109.47431 * 300.00531 * 11 10 9 36 36 H 1.08995 * 109.47704 * 59.99932 * 12 10 9 37 37 H 1.09001 * 109.47300 * 180.02562 * 12 10 9 38 38 H 1.09005 * 109.46748 * 299.99677 * 12 10 9 39 39 H 0.97003 * 119.99672 * 179.97438 * 16 15 13 40 40 H 0.96698 * 114.00443 * 89.99889 * 22 21 5 41 41 H 1.08999 * 109.47147 * 89.99355 * 24 23 2 42 42 H 1.08993 * 109.47213 * 209.99910 * 24 23 2 43 43 H 1.09004 * 109.46716 * 329.99449 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2022 0.0000 4 6 3.5735 1.2142 -0.0005 5 6 4.2805 0.0092 -0.0005 6 6 5.7559 0.0147 -0.0005 7 8 6.3677 -1.0361 -0.0010 8 7 6.4254 1.1844 -0.0010 9 6 7.8904 1.1898 -0.0016 10 6 8.3950 2.6342 -0.0015 11 6 7.8819 3.3538 -1.2504 12 6 7.8829 3.3533 1.2481 13 6 9.9020 2.6398 -0.0014 14 1 10.4455 1.7065 -0.0019 15 6 10.5870 3.8364 -0.0019 16 7 9.9252 4.9729 -0.0018 17 14 12.4550 3.8433 -0.0025 18 1 12.9551 2.4451 -0.0031 19 1 12.9469 4.5450 -1.2153 20 1 12.9478 4.5454 1.2097 21 6 3.5803 -1.2047 0.0006 22 8 4.2559 -2.3810 0.0011 23 6 2.1932 -1.1979 0.0057 24 6 1.4343 -2.4999 0.0125 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5138 28 1 1.6500 2.1342 0.0004 29 1 4.1061 2.1536 -0.0001 30 1 5.9373 2.0226 -0.0010 31 1 8.2560 0.6775 0.8884 32 1 8.2553 0.6772 -0.8916 33 1 6.7919 3.3498 -1.2499 34 1 8.2410 4.3830 -1.2501 35 1 8.2467 2.8415 -2.1406 36 1 8.2484 2.8407 2.1379 37 1 8.2420 4.3824 1.2480 38 1 6.7928 3.3492 1.2485 39 1 10.4071 5.8147 -0.0017 40 1 4.4522 -2.7215 0.8846 41 1 1.2509 -2.8189 -1.0135 42 1 2.0205 -3.2593 0.5298 43 1 0.4827 -2.3630 0.5261 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457991873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:34 Heat of formation + Delta-G solvation = -87.260360 kcal Electronic energy + Delta-G solvation = -23376.738578 eV Core-core repulsion = 19999.798725 eV Total energy + Delta-G solvation = -3376.939854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59008 -40.01835 -38.16787 -37.77385 -35.16599 -34.36391 -32.64612 -31.93599 -28.85220 -27.94832 -27.59400 -27.34126 -26.29004 -23.42884 -22.83734 -21.14404 -20.65400 -19.17173 -18.46673 -17.78009 -17.47865 -16.65241 -16.49566 -16.22609 -15.95156 -15.48488 -15.12519 -14.81919 -14.66380 -14.51372 -14.26213 -13.91068 -13.67752 -13.55306 -13.23679 -13.22715 -13.12320 -12.73778 -12.59145 -12.57163 -12.33945 -12.26878 -12.24626 -12.15223 -11.66644 -11.51658 -11.29332 -10.79734 -10.67407 -10.41873 -10.04468 -9.60671 -9.54376 -8.04047 -6.19795 -0.22084 0.25390 1.40532 1.44544 1.54233 1.85553 2.25330 2.47936 2.70533 3.19520 3.23989 3.69748 3.76610 3.95416 4.15343 4.24792 4.37830 4.47411 4.54985 4.61065 4.70099 4.75680 4.79237 4.90182 4.95129 4.95929 5.02030 5.08606 5.16196 5.17513 5.23724 5.30399 5.32472 5.37168 5.54685 5.57325 5.64413 5.65763 5.85785 6.12049 6.18476 6.41361 6.62553 6.78856 6.83901 7.26631 7.47949 8.95294 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032822 B = 0.003376 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.878893 B = 8292.048749 C = 8940.722771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.046 4.046 3 C -0.132 4.132 4 C -0.077 4.077 5 C -0.191 4.191 6 C 0.544 3.456 7 O -0.575 6.575 8 N -0.707 5.707 9 C 0.149 3.851 10 C 0.052 3.948 11 C -0.121 4.121 12 C -0.120 4.120 13 C -0.530 4.530 14 H 0.043 0.957 15 C 0.029 3.971 16 N -0.898 5.898 17 Si 0.946 3.054 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.148 3.852 22 O -0.492 6.492 23 C -0.132 4.132 24 C -0.107 4.107 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.161 0.839 29 H 0.139 0.861 30 H 0.406 0.594 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.016 0.984 36 H 0.018 0.982 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.401 0.599 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.336 -6.850 1.814 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.046 4.046 3 C -0.150 4.150 4 C -0.095 4.095 5 C -0.194 4.194 6 C 0.333 3.667 7 O -0.457 6.457 8 N -0.359 5.359 9 C 0.025 3.975 10 C 0.051 3.949 11 C -0.179 4.179 12 C -0.178 4.178 13 C -0.568 4.568 14 H 0.062 0.938 15 C -0.171 4.171 16 N -0.537 5.537 17 Si 0.773 3.227 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.205 1.205 21 C 0.102 3.898 22 O -0.304 6.304 23 C -0.133 4.133 24 C -0.163 4.163 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.179 0.821 29 H 0.157 0.843 30 H 0.244 0.756 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.260 0.740 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.861 -7.333 1.218 23.091 hybrid contribution 1.735 0.380 0.395 1.819 sum -20.127 -6.953 1.613 21.355 Atomic orbital electron populations 1.21033 0.87940 1.04687 1.03856 1.20286 0.98201 0.91346 0.94762 1.21330 0.92935 0.99342 1.01375 1.21433 0.95513 0.96227 0.96359 1.20408 0.91947 0.95647 1.11417 1.18648 0.88055 0.83656 0.76348 1.90729 1.70647 1.32468 1.51821 1.46049 1.07799 1.08378 1.73651 1.21297 0.78075 0.99233 0.98884 1.18360 0.94219 0.88750 0.93572 1.21678 0.96905 1.02520 0.96760 1.21667 0.96925 1.02484 0.96693 1.21293 0.91837 0.92350 1.51368 0.93823 1.25450 1.01734 0.95318 0.94590 1.69908 1.35815 0.97358 1.50633 0.85687 0.81605 0.77797 0.77600 1.20121 1.20662 1.20550 1.18586 0.89991 0.84387 0.96830 1.84699 1.76580 1.34835 1.34288 1.20314 0.91484 0.97888 1.03571 1.20768 1.00178 0.92264 1.03105 0.89523 0.89556 0.89579 0.82100 0.84311 0.75574 0.94213 0.94590 0.94628 0.91579 0.96437 0.96241 0.91636 0.94572 0.92948 0.73955 0.90800 0.91508 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.60 71.24 0.68 -0.37 16 2 C -0.05 -0.76 5.88 -19.83 -0.12 -0.88 16 3 C -0.13 -2.34 9.67 22.24 0.22 -2.12 16 4 C -0.08 -1.81 9.53 22.52 0.21 -1.59 16 5 C -0.19 -5.82 5.89 -20.01 -0.12 -5.94 16 6 C 0.54 20.95 7.76 86.70 0.67 21.63 16 7 O -0.58 -26.23 15.16 16.90 0.26 -25.97 16 8 N -0.71 -26.63 4.91 -466.26 -2.29 -28.92 16 9 C 0.15 6.68 4.50 86.38 0.39 7.07 16 10 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 11 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 12 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 13 C -0.53 -28.60 8.01 25.60 0.21 -28.40 16 14 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 15 C 0.03 1.54 5.15 84.65 0.44 1.97 16 16 N -0.90 -48.09 9.35 21.45 0.20 -47.88 16 17 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 C 0.15 4.16 6.69 22.84 0.15 4.31 16 22 O -0.49 -14.55 10.63 -68.74 -0.73 -15.28 16 23 C -0.13 -2.72 5.89 -19.80 -0.12 -2.84 16 24 C -0.11 -1.56 9.37 71.24 0.67 -0.89 16 25 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.09 0.53 8.08 -2.39 -0.02 0.51 16 27 H 0.09 0.57 5.91 -2.38 -0.01 0.55 16 28 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.14 2.92 6.40 -2.91 -0.02 2.90 16 30 H 0.41 13.30 4.19 -92.71 -0.39 12.91 16 31 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.03 1.36 6.86 -2.39 -0.02 1.34 16 34 H 0.07 3.30 6.07 -2.39 -0.01 3.29 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 38 H 0.04 1.36 6.86 -2.38 -0.02 1.34 16 39 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 40 H 0.40 9.07 9.06 -74.06 -0.67 8.40 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 0.99 7.54 -2.39 -0.02 0.97 16 43 H 0.09 0.88 5.92 -2.39 -0.01 0.86 16 Total: -1.00 -67.75 341.44 3.87 -63.88 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.02 Total: 24.45 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 4.42 Total: -15.36 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -2.09 Total: -76.80 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.47 Total: -41.25 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -67.75 3.87 -63.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457991873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.379 kcal (2) G-P(sol) polarization free energy of solvation -67.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds