Wall clock time and date at job start Tue Mar 31 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00286 * 2 1 4 4 C 1.52996 * 109.47277 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47072 * 65.00002 * 4 3 2 6 6 C 1.36939 * 119.99968 * 274.30519 * 5 4 3 7 7 H 1.08001 * 120.00178 * 146.02651 * 6 5 4 8 8 C 1.38810 * 119.99874 * 326.02624 * 6 5 4 9 9 N 1.31618 * 120.00154 * 335.36719 * 8 6 5 10 10 Si 1.86801 * 120.00027 * 155.36887 * 8 6 5 11 11 H 1.48504 * 109.47110 * 59.99950 * 10 8 6 12 12 H 1.48497 * 109.47270 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46937 * 300.00304 * 10 8 6 14 14 C 1.46498 * 119.99949 * 94.30549 * 5 4 3 15 15 C 1.52997 * 109.47288 * 269.99540 * 14 5 4 16 16 C 1.50700 * 109.47505 * 179.97438 * 15 14 5 17 17 O 1.21253 * 119.99863 * 0.02562 * 16 15 14 18 18 C 1.47163 * 120.00251 * 179.97438 * 16 15 14 19 19 C 1.39856 * 120.17172 * 180.02562 * 18 16 15 20 20 C 1.37887 * 119.82142 * 180.30023 * 19 18 16 21 21 C 1.38404 * 120.17427 * 359.45097 * 20 19 18 22 22 C 1.50703 * 119.82674 * 180.27823 * 21 20 19 23 23 C 1.38407 * 120.34515 * 0.55412 * 21 20 19 24 24 C 1.37883 * 120.17303 * 359.72679 * 23 21 20 25 25 H 1.09004 * 109.47162 * 59.99798 * 1 2 3 26 26 H 1.09000 * 109.47638 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47576 * 300.00160 * 1 2 3 28 28 H 1.09000 * 109.46996 * 59.99826 * 3 2 1 29 29 H 1.08998 * 109.47374 * 300.00071 * 3 2 1 30 30 H 1.08999 * 109.47337 * 304.99883 * 4 3 2 31 31 H 1.08999 * 109.47086 * 185.00154 * 4 3 2 32 32 H 0.97003 * 119.99898 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47111 * 150.00171 * 14 5 4 34 34 H 1.09004 * 109.47619 * 30.00095 * 14 5 4 35 35 H 1.09008 * 109.46897 * 60.00135 * 15 14 5 36 36 H 1.08994 * 109.47645 * 300.00389 * 15 14 5 37 37 H 1.07993 * 120.08535 * 0.03141 * 19 18 16 38 38 H 1.07999 * 119.90949 * 179.72084 * 20 19 18 39 39 H 1.09001 * 109.46810 * 270.27846 * 22 21 20 40 40 H 1.09001 * 109.47088 * 30.27445 * 22 21 20 41 41 H 1.08996 * 109.47071 * 150.27711 * 22 21 20 42 42 H 1.08001 * 119.90657 * 179.69806 * 23 21 20 43 43 H 1.08000 * 120.08367 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0134 -0.8005 -1.3628 7 1 3.7928 -1.2708 -2.3096 8 6 4.3340 -1.5790 -0.2592 9 7 5.0519 -1.0696 0.7194 10 14 3.7468 -3.3497 -0.1628 11 1 4.2921 -4.1153 -1.3126 12 1 4.2193 -3.9595 1.1060 13 1 2.2628 -3.3820 -0.2057 14 6 4.3786 1.4027 -2.3826 15 6 3.1586 1.6975 -3.2576 16 6 3.5719 2.5610 -4.4215 17 8 4.7283 2.9061 -4.5398 18 6 2.5723 2.9844 -5.4151 19 6 2.9521 3.7853 -6.4969 20 6 2.0084 4.1830 -7.4202 21 6 0.6906 3.7823 -7.2848 22 6 -0.3332 4.2164 -8.3020 23 6 0.3069 2.9898 -6.2169 24 6 1.2377 2.5886 -5.2821 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.2756 -1.6135 1.4907 33 1 5.1312 0.8801 -2.9730 34 1 4.7943 2.3394 -2.0111 35 1 2.4059 2.2202 -2.6672 36 1 2.7430 0.7610 -3.6291 37 1 3.9809 4.0950 -6.6064 38 1 2.2992 4.8052 -8.2537 39 1 -0.7745 5.1636 -7.9918 40 1 0.1483 4.3403 -9.2720 41 1 -1.1137 3.4594 -8.3777 42 1 -0.7243 2.6853 -6.1155 43 1 0.9366 1.9705 -4.4491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459525131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:48 Heat of formation + Delta-G solvation = -39.941744 kcal Electronic energy + Delta-G solvation = -23224.185340 eV Core-core repulsion = 19849.297375 eV Total energy + Delta-G solvation = -3374.887965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.96496 -38.31155 -37.17349 -35.32613 -33.10303 -31.94048 -31.12884 -30.15995 -28.49022 -27.35102 -25.62785 -24.47279 -22.87055 -22.70645 -21.54722 -20.16753 -19.26903 -17.04038 -16.54748 -15.75535 -15.59017 -15.31084 -14.99949 -14.84540 -14.64153 -14.16560 -13.99972 -13.96887 -13.77617 -13.61560 -13.32092 -12.98691 -12.44753 -12.36061 -11.99090 -11.81871 -11.75023 -11.69841 -11.16845 -11.01900 -10.81518 -10.68616 -10.59739 -10.41608 -9.93031 -9.81611 -9.65909 -9.39137 -9.10349 -8.80188 -8.74002 -8.30884 -6.51814 -5.63674 -3.16613 0.67715 1.27760 2.57986 3.50346 3.55236 3.61575 3.75203 4.23954 4.60979 4.64630 4.67687 4.74206 4.86247 5.03962 5.26007 5.29379 5.40301 5.49466 5.50420 5.54389 5.69359 5.74622 5.79940 5.82465 5.84710 5.88232 5.98943 6.08930 6.16546 6.22065 6.33840 6.35909 6.37762 6.50488 6.63365 6.73168 6.79120 6.80664 7.10130 7.73393 7.84089 7.94942 8.12764 8.63902 9.30383 9.96746 10.49084 11.37599 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.003904 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.856686 B = 7170.133477 C = 7667.148362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.048 3.952 4 C 0.136 3.864 5 N -0.576 5.576 6 C -0.244 4.244 7 H 0.057 0.943 8 C 0.021 3.979 9 N -0.891 5.891 10 Si 0.896 3.104 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.281 1.281 14 C 0.157 3.843 15 C -0.183 4.183 16 C 0.395 3.605 17 O -0.456 6.456 18 C -0.169 4.169 19 C -0.062 4.062 20 C -0.138 4.138 21 C -0.064 4.064 22 C -0.118 4.118 23 C -0.136 4.136 24 C -0.066 4.066 25 H 0.027 0.973 26 H 0.073 0.927 27 H 0.025 0.975 28 H 0.023 0.977 29 H 0.027 0.973 30 H 0.106 0.894 31 H 0.040 0.960 32 H 0.252 0.748 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.126 0.874 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.855 10.461 -12.213 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.267 6.267 3 C -0.031 4.031 4 C 0.009 3.991 5 N -0.295 5.295 6 C -0.373 4.373 7 H 0.075 0.925 8 C -0.178 4.178 9 N -0.534 5.534 10 Si 0.726 3.274 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.207 1.207 14 C 0.029 3.971 15 C -0.223 4.223 16 C 0.273 3.727 17 O -0.331 6.331 18 C -0.170 4.170 19 C -0.080 4.080 20 C -0.155 4.155 21 C -0.064 4.064 22 C -0.174 4.174 23 C -0.154 4.154 24 C -0.084 4.084 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.124 0.876 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.144 0.856 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.021 10.378 -12.102 19.381 hybrid contribution -0.939 -0.654 0.086 1.147 sum -11.959 9.724 -12.016 19.544 Atomic orbital electron populations 1.22632 0.84559 1.01394 0.98263 1.88269 1.16239 1.27489 1.94748 1.23466 0.98887 0.84166 0.96617 1.21130 0.87734 0.96610 0.93639 1.43726 1.74055 1.02423 1.09303 1.18778 1.40683 0.80976 0.96877 0.92515 1.24883 0.96966 0.97519 0.98456 1.69973 1.36267 1.36757 1.10421 0.86483 0.79358 0.85027 0.76509 1.21276 1.22055 1.20731 1.20645 0.92043 0.94680 0.89683 1.22824 1.03925 0.99682 0.95915 1.22877 0.87213 0.77644 0.84993 1.90478 1.20820 1.48075 1.73773 1.20812 0.95464 1.02292 0.98407 1.21446 1.00016 0.94220 0.92351 1.20997 0.92668 1.01777 1.00105 1.20167 0.94718 0.95888 0.95665 1.20856 0.97525 1.01767 0.97281 1.21026 0.99777 0.99671 0.94936 1.21549 0.91937 0.96692 0.98218 0.95420 0.90836 0.95632 0.95939 0.95529 0.87628 0.94169 0.93763 0.92706 0.94317 0.89467 0.88579 0.84999 0.85732 0.90902 0.91383 0.91306 0.85598 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.35 -7.70 9.97 -35.23 -0.35 -8.05 16 3 C 0.05 0.96 6.28 37.16 0.23 1.19 16 4 C 0.14 3.16 5.82 -4.04 -0.02 3.14 16 5 N -0.58 -14.23 2.45 -173.24 -0.42 -14.66 16 6 C -0.24 -6.69 8.75 -15.06 -0.13 -6.82 16 7 H 0.06 1.56 7.94 -52.49 -0.42 1.15 16 8 C 0.02 0.60 4.95 -17.43 -0.09 0.51 16 9 N -0.89 -26.09 11.37 55.49 0.63 -25.46 16 10 Si 0.90 22.46 29.62 -169.99 -5.03 17.43 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 14 C 0.16 3.38 5.00 -4.04 -0.02 3.36 16 15 C -0.18 -3.21 4.63 -27.88 -0.13 -3.33 16 16 C 0.40 6.56 7.12 -30.69 -0.22 6.34 16 17 O -0.46 -8.75 15.98 5.58 0.09 -8.66 16 18 C -0.17 -2.36 5.87 -105.07 -0.62 -2.98 16 19 C -0.06 -0.79 9.60 -39.10 -0.38 -1.16 16 20 C -0.14 -1.43 9.68 -39.65 -0.38 -1.82 16 21 C -0.06 -0.63 5.89 -104.50 -0.62 -1.24 16 22 C -0.12 -0.78 10.00 36.01 0.36 -0.42 16 23 C -0.14 -1.40 9.68 -39.65 -0.38 -1.79 16 24 C -0.07 -0.79 9.47 -39.11 -0.37 -1.17 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.49 6.45 -51.93 -0.34 0.16 16 30 H 0.11 2.85 5.38 -51.93 -0.28 2.57 16 31 H 0.04 0.86 7.84 -51.93 -0.41 0.46 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.05 1.27 8.00 -51.93 -0.42 0.86 16 34 H 0.04 0.82 7.82 -51.93 -0.41 0.42 16 35 H 0.09 1.43 6.40 -51.92 -0.33 1.09 16 36 H 0.10 1.70 8.09 -51.93 -0.42 1.28 16 37 H 0.13 1.65 7.65 -52.49 -0.40 1.25 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 41 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.13 1.52 7.05 -52.49 -0.37 1.15 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -31.84 358.38 -8.06 -39.90 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.72 Total: -1.32 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.65 Total: -4.58 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.21 Total: -40.11 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.26 Total: -16.71 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.84 -8.06 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459525131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.044 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds