Wall clock time and date at job start Tue Mar 31 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00286 * 2 1 4 4 C 1.52996 * 109.47277 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47072 * 65.00002 * 4 3 2 6 6 C 1.36939 * 119.99968 * 274.30519 * 5 4 3 7 7 H 1.08001 * 120.00178 * 146.02651 * 6 5 4 8 8 C 1.38810 * 119.99874 * 326.02624 * 6 5 4 9 9 N 1.31618 * 120.00154 * 335.36719 * 8 6 5 10 10 Si 1.86801 * 120.00027 * 155.36887 * 8 6 5 11 11 H 1.48504 * 109.47110 * 59.99950 * 10 8 6 12 12 H 1.48497 * 109.47270 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46937 * 300.00304 * 10 8 6 14 14 C 1.46498 * 119.99949 * 94.30549 * 5 4 3 15 15 C 1.52997 * 109.47288 * 269.99540 * 14 5 4 16 16 C 1.50700 * 109.47505 * 179.97438 * 15 14 5 17 17 O 1.21253 * 119.99863 * 0.02562 * 16 15 14 18 18 C 1.47163 * 120.00251 * 179.97438 * 16 15 14 19 19 C 1.39856 * 120.17172 * 180.02562 * 18 16 15 20 20 C 1.37887 * 119.82142 * 180.30023 * 19 18 16 21 21 C 1.38404 * 120.17427 * 359.45097 * 20 19 18 22 22 C 1.50703 * 119.82674 * 180.27823 * 21 20 19 23 23 C 1.38407 * 120.34515 * 0.55412 * 21 20 19 24 24 C 1.37883 * 120.17303 * 359.72679 * 23 21 20 25 25 H 1.09004 * 109.47162 * 59.99798 * 1 2 3 26 26 H 1.09000 * 109.47638 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47576 * 300.00160 * 1 2 3 28 28 H 1.09000 * 109.46996 * 59.99826 * 3 2 1 29 29 H 1.08998 * 109.47374 * 300.00071 * 3 2 1 30 30 H 1.08999 * 109.47337 * 304.99883 * 4 3 2 31 31 H 1.08999 * 109.47086 * 185.00154 * 4 3 2 32 32 H 0.97003 * 119.99898 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47111 * 150.00171 * 14 5 4 34 34 H 1.09004 * 109.47619 * 30.00095 * 14 5 4 35 35 H 1.09008 * 109.46897 * 60.00135 * 15 14 5 36 36 H 1.08994 * 109.47645 * 300.00389 * 15 14 5 37 37 H 1.07993 * 120.08535 * 0.03141 * 19 18 16 38 38 H 1.07999 * 119.90949 * 179.72084 * 20 19 18 39 39 H 1.09001 * 109.46810 * 270.27846 * 22 21 20 40 40 H 1.09001 * 109.47088 * 30.27445 * 22 21 20 41 41 H 1.08996 * 109.47071 * 150.27711 * 22 21 20 42 42 H 1.08001 * 119.90657 * 179.69806 * 23 21 20 43 43 H 1.08000 * 120.08367 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0134 -0.8005 -1.3628 7 1 3.7928 -1.2708 -2.3096 8 6 4.3340 -1.5790 -0.2592 9 7 5.0519 -1.0696 0.7194 10 14 3.7468 -3.3497 -0.1628 11 1 4.2921 -4.1153 -1.3126 12 1 4.2193 -3.9595 1.1060 13 1 2.2628 -3.3820 -0.2057 14 6 4.3786 1.4027 -2.3826 15 6 3.1586 1.6975 -3.2576 16 6 3.5719 2.5610 -4.4215 17 8 4.7283 2.9061 -4.5398 18 6 2.5723 2.9844 -5.4151 19 6 2.9521 3.7853 -6.4969 20 6 2.0084 4.1830 -7.4202 21 6 0.6906 3.7823 -7.2848 22 6 -0.3332 4.2164 -8.3020 23 6 0.3069 2.9898 -6.2169 24 6 1.2377 2.5886 -5.2821 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.2756 -1.6135 1.4907 33 1 5.1312 0.8801 -2.9730 34 1 4.7943 2.3394 -2.0111 35 1 2.4059 2.2202 -2.6672 36 1 2.7430 0.7610 -3.6291 37 1 3.9809 4.0950 -6.6064 38 1 2.2992 4.8052 -8.2537 39 1 -0.7745 5.1636 -7.9918 40 1 0.1483 4.3403 -9.2720 41 1 -1.1137 3.4594 -8.3777 42 1 -0.7243 2.6853 -6.1155 43 1 0.9366 1.9705 -4.4491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459525131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:47 Heat of formation + Delta-G solvation = -57.714161 kcal Electronic energy + Delta-G solvation = -23224.956010 eV Core-core repulsion = 19849.297375 eV Total energy + Delta-G solvation = -3375.658634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08441 -39.43506 -38.77543 -37.10166 -34.12145 -33.65549 -32.24499 -31.63141 -30.03441 -28.41134 -27.10259 -26.16009 -24.31032 -23.57164 -22.78966 -21.92852 -20.49142 -18.74516 -18.01252 -17.24451 -16.80252 -16.55377 -16.45516 -16.19401 -16.14998 -15.60353 -15.47425 -15.10768 -14.88660 -14.66657 -14.53887 -14.42601 -13.89138 -13.45740 -13.37541 -12.99879 -12.94133 -12.79561 -12.63424 -12.53090 -12.38215 -12.32646 -12.26879 -11.93004 -11.87839 -11.57787 -11.49929 -10.77210 -10.36723 -10.23937 -9.95937 -9.66755 -8.54326 -7.72567 -5.29371 -0.31834 0.42729 1.44108 1.48602 1.53455 1.60256 2.58557 2.82374 3.03056 3.26035 3.40388 3.73949 3.85901 3.97022 4.04043 4.18479 4.25484 4.32129 4.43878 4.45498 4.55314 4.59177 4.65792 4.76434 4.79197 4.81606 4.86248 4.87351 4.89012 4.93611 4.98100 5.09788 5.10752 5.24514 5.33641 5.39433 5.46545 5.59269 5.73565 5.84546 5.97371 6.47638 6.56562 6.72095 7.25627 7.94809 8.43829 9.24198 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.003904 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.856686 B = 7170.133477 C = 7667.148362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.058 3.942 4 C 0.132 3.868 5 N -0.589 5.589 6 C -0.242 4.242 7 H 0.050 0.950 8 C -0.025 4.025 9 N -0.921 5.921 10 Si 0.949 3.051 11 H -0.281 1.281 12 H -0.298 1.298 13 H -0.279 1.279 14 C 0.159 3.841 15 C -0.166 4.166 16 C 0.401 3.599 17 O -0.494 6.494 18 C -0.195 4.195 19 C -0.074 4.074 20 C -0.139 4.139 21 C -0.056 4.056 22 C -0.117 4.117 23 C -0.138 4.138 24 C -0.069 4.069 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.248 0.752 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.149 0.851 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.153 0.847 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.052 11.369 -13.992 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.021 4.021 4 C 0.006 3.994 5 N -0.310 5.310 6 C -0.372 4.372 7 H 0.068 0.932 8 C -0.222 4.222 9 N -0.567 5.567 10 Si 0.778 3.222 11 H -0.207 1.207 12 H -0.224 1.224 13 H -0.205 1.205 14 C 0.032 3.968 15 C -0.205 4.205 16 C 0.281 3.719 17 O -0.373 6.373 18 C -0.196 4.196 19 C -0.093 4.093 20 C -0.157 4.157 21 C -0.056 4.056 22 C -0.174 4.174 23 C -0.156 4.156 24 C -0.087 4.087 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.167 0.833 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.171 0.829 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.251 11.300 -13.903 22.893 hybrid contribution -0.005 -0.855 0.547 1.015 sum -14.256 10.445 -13.356 22.153 Atomic orbital electron populations 1.22821 0.81797 1.02391 1.00190 1.88185 1.19374 1.28479 1.95155 1.23221 0.96190 0.84139 0.98531 1.21077 0.90527 0.96094 0.91688 1.43884 1.74698 1.01961 1.10423 1.18921 1.39354 0.82455 0.96513 0.93216 1.25470 0.97552 1.00601 0.98532 1.70103 1.37883 1.37775 1.10892 0.85642 0.78761 0.81534 0.76261 1.20669 1.22429 1.20512 1.20609 0.93373 0.93617 0.89169 1.22519 1.01940 1.00209 0.95872 1.22951 0.87265 0.76618 0.85018 1.90466 1.22335 1.49771 1.74681 1.20566 0.95612 1.04657 0.98750 1.21520 1.00386 0.94532 0.92816 1.21292 0.92657 1.01672 1.00087 1.20621 0.95050 0.94228 0.95716 1.20945 0.96993 1.02671 0.96747 1.21373 1.00684 0.99177 0.94354 1.21673 0.91340 0.96673 0.98992 0.93340 0.90429 0.93701 0.93695 0.93608 0.91237 0.93173 0.94329 0.95379 0.94551 0.87757 0.88639 0.85848 0.83284 0.89554 0.90231 0.90046 0.82906 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 2.00 16 2 O -0.39 -16.79 9.97 -148.98 -1.49 -18.28 16 3 C 0.06 2.24 6.28 71.98 0.45 2.69 16 4 C 0.13 6.22 5.82 86.38 0.50 6.73 16 5 N -0.59 -29.62 2.45 -702.02 -1.72 -31.34 16 6 C -0.24 -13.53 8.75 84.03 0.74 -12.79 16 7 H 0.05 2.79 7.94 -2.91 -0.02 2.77 16 8 C -0.03 -1.43 4.95 84.86 0.42 -1.01 16 9 N -0.92 -55.49 11.37 21.65 0.25 -55.24 16 10 Si 0.95 46.78 29.62 68.60 2.03 48.81 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 13 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 14 C 0.16 7.04 5.00 86.38 0.43 7.47 16 15 C -0.17 -5.78 4.63 29.85 0.14 -5.64 16 16 C 0.40 13.50 7.12 28.03 0.20 13.69 16 17 O -0.49 -19.70 15.98 -2.95 -0.05 -19.75 16 18 C -0.19 -5.32 5.87 -20.15 -0.12 -5.44 16 19 C -0.07 -1.83 9.60 22.58 0.22 -1.61 16 20 C -0.14 -2.56 9.68 22.23 0.22 -2.34 16 21 C -0.06 -0.89 5.89 -19.78 -0.12 -1.01 16 22 C -0.12 -1.04 10.00 71.24 0.71 -0.33 16 23 C -0.14 -2.38 9.68 22.23 0.22 -2.16 16 24 C -0.07 -1.52 9.47 22.58 0.21 -1.31 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.58 6.45 -2.39 -0.02 1.56 16 30 H 0.07 3.86 5.38 -2.39 -0.01 3.85 16 31 H 0.05 2.18 7.84 -2.39 -0.02 2.16 16 32 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.03 1.36 8.00 -2.39 -0.02 1.34 16 34 H 0.04 1.60 7.82 -2.39 -0.02 1.58 16 35 H 0.10 3.27 6.40 -2.38 -0.02 3.25 16 36 H 0.10 3.36 8.09 -2.39 -0.02 3.34 16 37 H 0.12 3.15 7.65 -2.91 -0.02 3.13 16 38 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 41 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 42 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 43 H 0.14 2.85 7.05 -2.91 -0.02 2.83 16 Total: -1.00 -70.78 358.38 5.47 -65.31 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.98 Total: 11.56 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.47 Total: -1.07 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -1.48 Total: -86.58 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -1.53 Total: -38.03 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -70.78 5.47 -65.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459525131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.593 kcal (2) G-P(sol) polarization free energy of solvation -70.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds