Wall clock time and date at job start Tue Mar 31 2020 07:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37715 * 119.96181 * 2 1 4 4 C 1.39715 * 119.91562 * 179.97438 * 3 2 1 5 5 C 1.47599 * 120.08989 * 179.97438 * 4 3 2 6 6 O 1.21580 * 120.00167 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00052 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00055 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47064 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47174 * 299.99551 * 9 8 7 11 11 C 1.52997 * 109.47364 * 59.99578 * 9 8 7 12 12 C 1.52999 * 109.47355 * 180.02562 * 9 8 7 13 13 C 1.50696 * 109.47549 * 179.97438 * 12 9 8 14 14 H 1.08001 * 119.99657 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00361 * 179.97438 * 13 12 9 16 16 N 1.31517 * 120.00096 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00421 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47179 * 89.99947 * 17 15 13 19 19 H 1.48503 * 109.47326 * 210.00505 * 17 15 13 20 20 H 1.48499 * 109.46852 * 330.00229 * 17 15 13 21 21 C 1.39758 * 119.81785 * 359.72414 * 4 3 2 22 22 C 1.37674 * 119.91501 * 0.54839 * 21 4 3 23 23 C 1.38979 * 119.95149 * 179.97438 * 2 1 3 24 24 O 1.35711 * 119.91121 * 359.97438 * 23 2 1 25 25 H 1.08999 * 109.47198 * 270.02767 * 1 2 3 26 26 H 1.09002 * 109.47072 * 30.02062 * 1 2 3 27 27 H 1.08989 * 109.47641 * 150.02681 * 1 2 3 28 28 H 1.08006 * 120.04491 * 359.94844 * 3 2 1 29 29 H 0.96998 * 119.99952 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.47043 * 299.99966 * 8 7 5 31 31 H 1.08997 * 109.47476 * 59.99979 * 8 7 5 32 32 H 1.09001 * 109.46863 * 60.00195 * 10 9 8 33 33 H 1.09003 * 109.47451 * 179.97438 * 10 9 8 34 34 H 1.08996 * 109.47339 * 300.00498 * 10 9 8 35 35 H 1.09007 * 109.46995 * 60.00032 * 11 9 8 36 36 H 1.08996 * 109.47281 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.47267 * 300.00170 * 11 9 8 38 38 H 1.09007 * 109.46646 * 299.99748 * 12 9 8 39 39 H 1.09003 * 109.47600 * 59.99443 * 12 9 8 40 40 H 0.96995 * 120.00555 * 179.97438 * 16 15 13 41 41 H 1.07998 * 120.03934 * 180.29374 * 21 4 3 42 42 H 1.08002 * 119.96021 * 179.73319 * 22 21 4 43 43 H 0.96694 * 114.00720 * 270.02117 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1931 0.0000 4 6 3.5919 1.1920 0.0005 5 6 4.3330 2.4685 0.0000 6 8 3.7276 3.5228 -0.0005 7 7 5.6807 2.4653 0.0010 8 6 6.4162 3.7322 0.0010 9 6 7.9198 3.4491 0.0030 10 6 8.2861 2.6468 1.2532 11 6 8.2890 2.6450 -1.2452 12 6 8.6880 4.7722 0.0036 13 6 10.1689 4.4934 0.0061 14 1 10.5265 3.4743 0.0068 15 6 11.0674 5.5392 0.0066 16 7 10.6320 6.7802 0.0053 17 14 12.9032 5.1935 0.0090 18 1 13.3913 5.1011 -1.3903 19 1 13.6132 6.2938 0.7094 20 1 13.1643 3.9108 0.7101 21 6 4.2859 -0.0211 0.0069 22 6 3.5911 -1.2096 0.0012 23 6 2.2009 -1.2042 0.0005 24 8 1.5195 -2.3778 0.0016 25 1 -0.3633 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5133 28 1 1.6549 2.1285 -0.0008 29 1 6.1637 1.6241 0.0025 30 1 6.1549 4.3040 -0.8894 31 1 6.1536 4.3049 0.8905 32 1 7.7388 1.7041 1.2533 33 1 9.3572 2.4447 1.2544 34 1 8.0230 3.2196 2.1425 35 1 8.0280 3.2166 -2.1360 36 1 9.3600 2.4429 -1.2436 37 1 7.7417 1.7023 -1.2452 38 1 8.4271 5.3442 -0.8869 39 1 8.4249 5.3448 0.8931 40 1 11.2640 7.5159 0.0060 41 1 5.3658 -0.0261 0.0122 42 1 4.1266 -2.1475 0.0018 43 1 1.3220 -2.7173 0.8852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489860724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:00 Heat of formation + Delta-G solvation = -78.290454 kcal Electronic energy + Delta-G solvation = -22774.908589 eV Core-core repulsion = 19398.357699 eV Total energy + Delta-G solvation = -3376.550889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54099 -39.28355 -37.27609 -36.57943 -33.87033 -32.96519 -32.04957 -30.44370 -27.46910 -27.04750 -26.54134 -26.12636 -23.81320 -22.51740 -22.28074 -20.20005 -18.65513 -18.55802 -17.27633 -16.52367 -16.20503 -15.79797 -15.28170 -15.10132 -14.66563 -14.47993 -14.00968 -13.77651 -13.58893 -13.48360 -13.14874 -12.88029 -12.74222 -12.33841 -12.30178 -12.16464 -12.06634 -11.91101 -11.17896 -11.03458 -10.86915 -10.77629 -10.65945 -10.42914 -10.27537 -9.91856 -9.90258 -9.20246 -9.18461 -8.95437 -8.94526 -8.68041 -8.37177 -6.01166 -4.02629 0.52985 1.02014 2.71634 3.29983 3.34008 3.37297 3.39359 3.60145 3.84612 4.43747 4.44241 4.53412 4.70376 4.92335 5.04442 5.24383 5.30705 5.34302 5.39202 5.48301 5.59814 5.62219 5.71465 5.79929 5.91649 6.04833 6.11957 6.13414 6.19563 6.27803 6.36324 6.40910 6.52665 6.60274 6.72548 7.03125 7.04904 7.09894 7.25271 7.62248 7.68760 7.74543 7.97351 8.34217 8.39835 9.02122 9.60603 11.10303 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037274 B = 0.002820 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.007725 B = 9927.555859 C =10474.349227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C -0.047 4.047 4 C -0.133 4.133 5 C 0.551 3.449 6 O -0.542 6.542 7 N -0.715 5.715 8 C 0.127 3.873 9 C -0.073 4.073 10 C -0.127 4.127 11 C -0.128 4.128 12 C 0.036 3.964 13 C -0.511 4.511 14 H 0.059 0.941 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.076 4.076 22 C -0.148 4.148 23 C 0.124 3.876 24 O -0.496 6.496 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.141 0.859 29 H 0.397 0.603 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.027 0.973 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.722 -17.607 1.667 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.122 4.122 3 C -0.066 4.066 4 C -0.136 4.136 5 C 0.337 3.663 6 O -0.420 6.420 7 N -0.366 5.366 8 C 0.005 3.995 9 C -0.073 4.073 10 C -0.185 4.185 11 C -0.185 4.185 12 C -0.002 4.002 13 C -0.550 4.550 14 H 0.077 0.923 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.095 4.095 22 C -0.167 4.167 23 C 0.079 3.921 24 O -0.306 6.306 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.158 0.842 29 H 0.234 0.766 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -17.029 -16.588 1.062 23.797 hybrid contribution 1.383 -0.558 0.486 1.568 sum -15.647 -17.147 1.547 23.264 Atomic orbital electron populations 1.20698 0.90185 1.03475 1.02492 1.20193 0.97105 0.92185 1.02672 1.21089 0.92643 0.98038 0.94817 1.20106 0.94373 0.93344 1.05799 1.18168 0.82505 0.88539 0.77073 1.90775 1.68501 1.32529 1.50241 1.46142 1.05659 1.10940 1.73890 1.21680 0.91807 0.84009 1.02037 1.20916 0.91368 0.99949 0.95101 1.21770 1.02060 0.97308 0.97326 1.21770 1.02042 0.97326 0.97347 1.19092 0.94217 0.89293 0.97550 1.21173 0.90941 0.92513 1.50331 0.92256 1.25014 0.98748 0.95193 0.95543 1.69962 1.34340 0.98254 1.50819 0.86647 0.85777 0.77843 0.78032 1.20769 1.21332 1.19953 1.21213 1.00042 0.91227 0.97010 1.21326 0.93357 0.98898 1.03074 1.18506 0.89739 0.84888 0.99001 1.84730 1.76175 1.36135 1.33579 0.91149 0.91112 0.90770 0.84162 0.76609 0.91574 0.91582 0.95376 0.91335 0.93277 0.93265 0.91348 0.95351 0.96295 0.96285 0.93018 0.85092 0.84739 0.75175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.78 36.01 0.35 -0.47 16 2 C -0.12 -1.17 5.89 -104.54 -0.62 -1.79 16 3 C -0.05 -0.54 9.23 -39.22 -0.36 -0.91 16 4 C -0.13 -1.67 5.88 -104.96 -0.62 -2.28 16 5 C 0.55 8.58 7.76 -12.44 -0.10 8.48 16 6 O -0.54 -10.38 16.34 5.30 0.09 -10.29 16 7 N -0.71 -10.53 4.91 -61.33 -0.30 -10.84 16 8 C 0.13 2.25 4.56 -4.04 -0.02 2.23 16 9 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 10 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 11 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 12 C 0.04 0.87 4.04 -27.89 -0.11 0.76 16 13 C -0.51 -13.45 7.65 -34.44 -0.26 -13.71 16 14 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 16 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 17 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.08 -0.77 9.53 -39.22 -0.37 -1.14 16 22 C -0.15 -1.33 9.97 -39.50 -0.39 -1.72 16 23 C 0.12 1.13 6.68 -39.02 -0.26 0.87 16 24 O -0.50 -3.68 12.52 -18.84 -0.24 -3.92 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.07 0.52 7.52 -51.94 -0.39 0.13 16 28 H 0.14 1.65 7.64 -52.48 -0.40 1.25 16 29 H 0.40 4.91 4.19 -40.82 -0.17 4.74 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 33 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 37 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 38 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.13 1.09 6.40 -52.49 -0.34 0.76 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.39 1.07 9.06 45.56 0.41 1.48 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -32.37 349.88 -7.33 -39.69 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.52 Total: 3.08 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.34 Total: -13.47 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.44 Total: -36.42 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.15 Total: -14.21 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.37 -7.33 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489860724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.596 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds