Wall clock time and date at job start Tue Mar 31 2020 07:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37715 * 119.96181 * 2 1 4 4 C 1.39715 * 119.91562 * 179.97438 * 3 2 1 5 5 C 1.47599 * 120.08989 * 179.97438 * 4 3 2 6 6 O 1.21580 * 120.00167 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00052 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00055 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47064 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47174 * 299.99551 * 9 8 7 11 11 C 1.52997 * 109.47364 * 59.99578 * 9 8 7 12 12 C 1.52999 * 109.47355 * 180.02562 * 9 8 7 13 13 C 1.50696 * 109.47549 * 179.97438 * 12 9 8 14 14 H 1.08001 * 119.99657 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00361 * 179.97438 * 13 12 9 16 16 N 1.31517 * 120.00096 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00421 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47179 * 89.99947 * 17 15 13 19 19 H 1.48503 * 109.47326 * 210.00505 * 17 15 13 20 20 H 1.48499 * 109.46852 * 330.00229 * 17 15 13 21 21 C 1.39758 * 119.81785 * 359.72414 * 4 3 2 22 22 C 1.37674 * 119.91501 * 0.54839 * 21 4 3 23 23 C 1.38979 * 119.95149 * 179.97438 * 2 1 3 24 24 O 1.35711 * 119.91121 * 359.97438 * 23 2 1 25 25 H 1.08999 * 109.47198 * 270.02767 * 1 2 3 26 26 H 1.09002 * 109.47072 * 30.02062 * 1 2 3 27 27 H 1.08989 * 109.47641 * 150.02681 * 1 2 3 28 28 H 1.08006 * 120.04491 * 359.94844 * 3 2 1 29 29 H 0.96998 * 119.99952 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.47043 * 299.99966 * 8 7 5 31 31 H 1.08997 * 109.47476 * 59.99979 * 8 7 5 32 32 H 1.09001 * 109.46863 * 60.00195 * 10 9 8 33 33 H 1.09003 * 109.47451 * 179.97438 * 10 9 8 34 34 H 1.08996 * 109.47339 * 300.00498 * 10 9 8 35 35 H 1.09007 * 109.46995 * 60.00032 * 11 9 8 36 36 H 1.08996 * 109.47281 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.47267 * 300.00170 * 11 9 8 38 38 H 1.09007 * 109.46646 * 299.99748 * 12 9 8 39 39 H 1.09003 * 109.47600 * 59.99443 * 12 9 8 40 40 H 0.96995 * 120.00555 * 179.97438 * 16 15 13 41 41 H 1.07998 * 120.03934 * 180.29374 * 21 4 3 42 42 H 1.08002 * 119.96021 * 179.73319 * 22 21 4 43 43 H 0.96694 * 114.00720 * 270.02117 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1931 0.0000 4 6 3.5919 1.1920 0.0005 5 6 4.3330 2.4685 0.0000 6 8 3.7276 3.5228 -0.0005 7 7 5.6807 2.4653 0.0010 8 6 6.4162 3.7322 0.0010 9 6 7.9198 3.4491 0.0030 10 6 8.2861 2.6468 1.2532 11 6 8.2890 2.6450 -1.2452 12 6 8.6880 4.7722 0.0036 13 6 10.1689 4.4934 0.0061 14 1 10.5265 3.4743 0.0068 15 6 11.0674 5.5392 0.0066 16 7 10.6320 6.7802 0.0053 17 14 12.9032 5.1935 0.0090 18 1 13.3913 5.1011 -1.3903 19 1 13.6132 6.2938 0.7094 20 1 13.1643 3.9108 0.7101 21 6 4.2859 -0.0211 0.0069 22 6 3.5911 -1.2096 0.0012 23 6 2.2009 -1.2042 0.0005 24 8 1.5195 -2.3778 0.0016 25 1 -0.3633 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5133 28 1 1.6549 2.1285 -0.0008 29 1 6.1637 1.6241 0.0025 30 1 6.1549 4.3040 -0.8894 31 1 6.1536 4.3049 0.8905 32 1 7.7388 1.7041 1.2533 33 1 9.3572 2.4447 1.2544 34 1 8.0230 3.2196 2.1425 35 1 8.0280 3.2166 -2.1360 36 1 9.3600 2.4429 -1.2436 37 1 7.7417 1.7023 -1.2452 38 1 8.4271 5.3442 -0.8869 39 1 8.4249 5.3448 0.8931 40 1 11.2640 7.5159 0.0060 41 1 5.3658 -0.0261 0.0122 42 1 4.1266 -2.1475 0.0018 43 1 1.3220 -2.7173 0.8852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489860724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:59 Heat of formation + Delta-G solvation = -99.947038 kcal Electronic energy + Delta-G solvation = -22775.847688 eV Core-core repulsion = 19398.357699 eV Total energy + Delta-G solvation = -3377.489989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49444 -40.31117 -38.69053 -37.41197 -35.36308 -34.19763 -33.48832 -31.29577 -29.13221 -28.20839 -27.96416 -27.29776 -25.27393 -23.94923 -23.05976 -21.33672 -19.98039 -19.30866 -18.50197 -18.32781 -17.39104 -16.59536 -16.53679 -16.35551 -16.21052 -15.60573 -15.20458 -15.03073 -14.73103 -14.44566 -14.35947 -14.08623 -13.93352 -13.80800 -13.61706 -13.02143 -12.90105 -12.83460 -12.74931 -12.70833 -12.57537 -12.33709 -12.22918 -11.97976 -11.54420 -11.42115 -11.27305 -10.92886 -10.82512 -10.50934 -10.19646 -9.91763 -9.57337 -8.13503 -6.21378 -0.29693 0.28224 1.43277 1.43598 1.53922 1.72655 2.12852 2.45350 2.70837 3.20897 3.21123 3.69605 3.74632 3.86916 3.96825 4.07240 4.16706 4.21806 4.32836 4.57960 4.68807 4.70759 4.73983 4.78763 4.80897 4.90384 4.95501 5.08633 5.12465 5.16372 5.22820 5.27952 5.35475 5.41087 5.45070 5.50588 5.53054 5.57042 5.73231 5.80217 5.90293 6.30369 6.51469 6.82440 6.93925 7.15951 7.46491 8.99138 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037274 B = 0.002820 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.007725 B = 9927.555859 C =10474.349227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.128 4.128 3 C -0.060 4.060 4 C -0.156 4.156 5 C 0.550 3.450 6 O -0.588 6.588 7 N -0.702 5.702 8 C 0.140 3.860 9 C -0.064 4.064 10 C -0.123 4.123 11 C -0.123 4.123 12 C 0.039 3.961 13 C -0.512 4.512 14 H 0.074 0.926 15 C -0.006 4.006 16 N -0.940 5.940 17 Si 0.959 3.041 18 H -0.276 1.276 19 H -0.291 1.291 20 H -0.258 1.258 21 C -0.070 4.070 22 C -0.147 4.147 23 C 0.135 3.865 24 O -0.499 6.499 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.412 0.588 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.058 0.942 37 H 0.069 0.931 38 H -0.014 1.014 39 H -0.014 1.014 40 H 0.259 0.741 41 H 0.152 0.848 42 H 0.162 0.838 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.615 -21.730 1.858 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.128 4.128 3 C -0.079 4.079 4 C -0.159 4.159 5 C 0.339 3.661 6 O -0.470 6.470 7 N -0.354 5.354 8 C 0.016 3.984 9 C -0.065 4.065 10 C -0.180 4.180 11 C -0.180 4.180 12 C 0.002 3.998 13 C -0.550 4.550 14 H 0.092 0.908 15 C -0.203 4.203 16 N -0.581 5.581 17 Si 0.784 3.216 18 H -0.202 1.202 19 H -0.217 1.217 20 H -0.182 1.182 21 C -0.089 4.089 22 C -0.165 4.165 23 C 0.089 3.911 24 O -0.313 6.313 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.145 0.855 29 H 0.252 0.748 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.004 0.996 39 H 0.005 0.995 40 H 0.068 0.932 41 H 0.169 0.831 42 H 0.179 0.821 43 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -16.921 -20.778 1.269 26.826 hybrid contribution 1.216 0.647 0.434 1.444 sum -15.705 -20.131 1.703 25.589 Atomic orbital electron populations 1.20732 0.88711 1.03697 1.03508 1.20395 0.98262 0.91790 1.02369 1.21088 0.92598 0.98463 0.95724 1.19882 0.94516 0.92520 1.08996 1.18697 0.82417 0.89270 0.75685 1.90748 1.69328 1.34543 1.52366 1.45875 1.05529 1.10280 1.73742 1.21277 0.91519 0.85205 1.00399 1.20713 0.91052 0.97459 0.97253 1.21709 1.01940 0.98700 0.95627 1.21713 1.01961 0.98688 0.95668 1.18978 0.94742 0.91730 0.94394 1.21590 0.91730 0.93052 1.48655 0.90780 1.25958 1.03827 0.94991 0.95504 1.70123 1.35941 0.99374 1.52644 0.85536 0.79781 0.78063 0.78210 1.20201 1.21664 1.18213 1.21397 1.01039 0.90460 0.95977 1.21610 0.93367 0.99459 1.02045 1.18612 0.90084 0.85171 0.97198 1.84675 1.75891 1.35134 1.35634 0.89699 0.91290 0.90124 0.85539 0.74827 0.93444 0.93343 0.91141 0.92334 0.94375 0.94456 0.92283 0.91173 0.99608 0.99526 0.93196 0.83083 0.82073 0.72440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.78 71.24 0.70 -0.71 16 2 C -0.13 -2.24 5.89 -19.81 -0.12 -2.36 16 3 C -0.06 -1.36 9.23 22.50 0.21 -1.15 16 4 C -0.16 -3.74 5.88 -20.08 -0.12 -3.86 16 5 C 0.55 17.16 7.76 86.71 0.67 17.84 16 6 O -0.59 -23.50 16.34 -3.97 -0.06 -23.57 16 7 N -0.70 -19.97 4.91 -466.22 -2.29 -22.26 16 8 C 0.14 5.06 4.56 86.38 0.39 5.46 16 9 C -0.06 -2.41 0.54 -52.18 -0.03 -2.43 16 10 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 11 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 12 C 0.04 1.99 4.04 29.85 0.12 2.11 16 13 C -0.51 -27.23 7.65 25.60 0.20 -27.03 16 14 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 15 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 16 N -0.94 -57.21 13.29 21.45 0.28 -56.92 16 17 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 C -0.07 -1.20 9.53 22.50 0.21 -0.98 16 22 C -0.15 -2.06 9.97 22.32 0.22 -1.84 16 23 C 0.13 2.03 6.68 22.64 0.15 2.18 16 24 O -0.50 -5.48 12.52 -90.32 -1.13 -6.61 16 25 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 27 H 0.08 0.93 7.52 -2.39 -0.02 0.91 16 28 H 0.13 3.13 7.64 -2.91 -0.02 3.11 16 29 H 0.41 8.93 4.19 -92.71 -0.39 8.54 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.70 6.86 -2.39 -0.02 1.69 16 33 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.06 2.07 6.62 -2.39 -0.02 2.05 16 37 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 38 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 39 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.15 1.86 6.40 -2.91 -0.02 1.84 16 42 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 43 H 0.41 0.53 9.06 -74.06 -0.67 -0.14 16 Total: -1.00 -73.36 349.88 3.03 -70.32 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -0.03 Total: 13.24 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 4.23 Total: -19.58 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -2.00 Total: -79.18 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -1.20 Total: -30.18 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -73.36 3.03 -70.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489860724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.626 kcal (2) G-P(sol) polarization free energy of solvation -73.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds