Wall clock time and date at job start Tue Mar 31 2020 07:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35157 * 125.48478 * 2 1 4 4 C 1.40308 * 107.20410 * 179.78056 * 3 2 1 5 5 C 1.37950 * 106.53294 * 0.35327 * 4 3 2 6 6 C 1.41604 * 126.10731 * 179.91051 * 5 4 3 7 7 C 1.35623 * 119.99956 * 179.71443 * 6 5 4 8 8 C 1.41553 * 119.99759 * 179.71952 * 7 6 5 9 9 O 1.21773 * 120.00180 * 0.27980 * 8 7 6 10 10 N 1.34777 * 120.00013 * 180.27280 * 8 7 6 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47053 * 300.00247 * 12 11 10 14 14 C 1.53002 * 109.47077 * 59.99546 * 12 11 10 15 15 C 1.52992 * 109.47322 * 179.97438 * 12 11 10 16 16 C 1.50703 * 109.47261 * 179.97438 * 15 12 11 17 17 H 1.08001 * 120.00043 * 0.02562 * 16 15 12 18 18 C 1.37879 * 119.99823 * 180.02562 * 16 15 12 19 19 N 1.31522 * 119.99572 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00297 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47136 * 89.99858 * 20 18 16 22 22 H 1.48501 * 109.46721 * 209.99887 * 20 18 16 23 23 H 1.48504 * 109.46915 * 329.99778 * 20 18 16 24 24 O 1.34017 * 125.48141 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47282 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46747 * 299.97571 * 1 2 3 27 27 H 1.08998 * 109.47179 * 59.96797 * 1 2 3 28 28 H 1.08005 * 126.39639 * 0.02562 * 3 2 1 29 29 H 1.08001 * 126.73601 * 180.22648 * 4 3 2 30 30 H 1.08001 * 120.00223 * 359.71117 * 6 5 4 31 31 H 1.08002 * 120.00354 * 0.02562 * 7 6 5 32 32 H 0.97001 * 120.00145 * 0.02562 * 10 8 7 33 33 H 1.08995 * 109.47424 * 300.00018 * 11 10 8 34 34 H 1.08998 * 109.47492 * 60.00443 * 11 10 8 35 35 H 1.08996 * 109.47135 * 60.00067 * 13 12 11 36 36 H 1.08998 * 109.46756 * 180.02562 * 13 12 11 37 37 H 1.08998 * 109.46853 * 299.99992 * 13 12 11 38 38 H 1.09009 * 109.46796 * 60.00708 * 14 12 11 39 39 H 1.08998 * 109.47195 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47765 * 300.00333 * 14 12 11 41 41 H 1.09000 * 109.47686 * 300.00180 * 15 12 11 42 42 H 1.09007 * 109.47129 * 60.00390 * 15 12 11 43 43 H 0.97001 * 119.99511 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.1005 0.0000 4 6 3.6238 0.6604 0.0051 5 6 3.5818 -0.7184 -0.0001 6 6 4.6999 -1.5874 0.0006 7 6 4.5145 -2.9309 0.0009 8 6 5.6322 -3.7995 -0.0044 9 8 6.7601 -3.3405 -0.0041 10 7 5.4480 -5.1346 -0.0097 11 6 6.6048 -6.0336 -0.0146 12 6 6.1223 -7.4855 -0.0207 13 6 5.2779 -7.7476 1.2280 14 6 5.2759 -7.7365 -1.2704 15 6 7.3303 -8.4244 -0.0265 16 6 6.8550 -9.8545 -0.0319 17 1 5.7971 -10.0720 -0.0317 18 6 7.7708 -10.8852 -0.0371 19 7 7.3560 -12.1333 -0.0413 20 14 9.6005 -10.5091 -0.0367 21 1 10.0864 -10.4156 1.3634 22 1 10.3289 -11.5940 -0.7421 23 1 9.8407 -9.2187 -0.7313 24 8 2.2849 -1.0913 -0.0005 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5135 0.8903 27 1 -0.3633 0.5143 -0.8897 28 1 1.9557 2.1270 0.0004 29 1 4.5087 1.2796 0.0099 30 1 5.7002 -1.1803 0.0009 31 1 3.5142 -3.3381 0.0001 32 1 4.5496 -5.5003 -0.0103 33 1 7.2060 -5.8472 -0.9044 34 1 7.2079 -5.8546 0.8755 35 1 4.4173 -7.0788 1.2316 36 1 4.9346 -8.7821 1.2239 37 1 5.8808 -7.5688 2.1183 38 1 5.8775 -7.5498 -2.1601 39 1 4.9326 -8.7709 -1.2750 40 1 4.4153 -7.0676 -1.2668 41 1 7.9315 -8.2376 -0.9163 42 1 7.9335 -8.2458 0.8637 43 1 8.0002 -12.8585 -0.0453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492843823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:24 Heat of formation + Delta-G solvation = -25.456978 kcal Electronic energy + Delta-G solvation = -22224.243918 eV Core-core repulsion = 18849.984060 eV Total energy + Delta-G solvation = -3374.259858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.90760 -39.82618 -37.31929 -34.51915 -33.65131 -33.59710 -32.12354 -31.49267 -28.12250 -27.49130 -26.54717 -25.93699 -23.42721 -22.22107 -22.04718 -20.62817 -19.72694 -18.15565 -17.43769 -16.93160 -16.60951 -16.43553 -15.60106 -15.10736 -14.86821 -14.31429 -13.84254 -13.72984 -13.66654 -13.49225 -13.43815 -13.31529 -12.84362 -12.69786 -12.47342 -12.34547 -12.25482 -12.17734 -11.24827 -11.12604 -10.99916 -10.83212 -10.60777 -10.47844 -10.12259 -10.00533 -9.95925 -9.73637 -9.45962 -8.98580 -8.81358 -8.52729 -8.11720 -6.03561 -4.00712 0.21933 1.77971 2.43201 2.49594 3.32367 3.40255 3.44613 3.47460 3.50023 4.30709 4.46469 4.51827 4.60578 4.80958 4.95351 4.98473 5.12390 5.26644 5.29103 5.33127 5.40845 5.46341 5.54367 5.65122 5.75212 5.83348 5.98738 6.12443 6.13790 6.15548 6.23157 6.33162 6.49711 6.60533 6.71205 6.76314 6.91695 7.02496 7.06071 7.21241 7.37744 7.68524 7.80577 8.36433 8.53790 9.00518 9.59187 11.09155 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036266 B = 0.002501 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.898085 B =11194.748821 C =11764.970579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.004 3.996 3 C -0.217 4.217 4 C -0.163 4.163 5 C -0.008 4.008 6 C 0.001 3.999 7 C -0.198 4.198 8 C 0.541 3.459 9 O -0.554 6.554 10 N -0.714 5.714 11 C 0.125 3.875 12 C -0.063 4.063 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.002 4.002 16 C -0.510 4.510 17 H 0.078 0.922 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 O -0.164 6.164 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.128 0.872 32 H 0.400 0.600 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.018 0.982 42 H 0.014 0.986 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.289 25.249 0.068 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 C -0.236 4.236 4 C -0.182 4.182 5 C -0.057 4.057 6 C -0.019 4.019 7 C -0.219 4.219 8 C 0.331 3.669 9 O -0.435 6.435 10 N -0.365 5.365 11 C 0.002 3.998 12 C -0.064 4.064 13 C -0.187 4.187 14 C -0.186 4.186 15 C -0.040 4.040 16 C -0.548 4.548 17 H 0.096 0.904 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.703 3.297 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 O -0.060 6.060 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.170 0.830 29 H 0.174 0.826 30 H 0.178 0.822 31 H 0.146 0.854 32 H 0.236 0.764 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.037 0.963 42 H 0.032 0.968 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.518 25.033 0.065 27.988 hybrid contribution 0.666 -0.010 0.022 0.667 sum -11.852 25.022 0.087 27.687 Atomic orbital electron populations 1.20396 0.84832 1.04436 1.03819 1.22743 0.94262 0.84063 1.03699 1.21502 0.92710 0.99566 1.09868 1.22339 0.98486 0.93183 1.04204 1.19855 0.81988 0.93557 1.10254 1.20649 0.95453 0.92188 0.93589 1.22167 0.99594 0.94398 1.05697 1.16986 0.89359 0.82901 0.77683 1.90825 1.25250 1.76627 1.50811 1.46121 1.10966 1.05742 1.73682 1.21647 0.87268 0.89099 1.01809 1.20693 0.98158 0.91754 0.95764 1.21781 0.97867 1.02180 0.96825 1.21778 0.97848 1.02190 0.96817 1.19595 0.92642 0.95241 0.96543 1.21081 0.95224 0.88154 1.50354 0.90399 1.25009 0.98717 0.95034 0.94756 1.69908 1.34418 0.98614 1.51383 0.86851 0.86087 0.78290 0.78498 1.20380 1.21516 1.18978 1.84057 1.16370 1.34778 1.70779 0.90280 0.89353 0.89350 0.83015 0.82598 0.82183 0.85371 0.76388 0.91726 0.91727 0.94993 0.90861 0.93391 0.93387 0.90860 0.94992 0.96339 0.96793 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.41 36.01 0.37 0.02 16 2 C 0.00 0.03 7.30 -35.40 -0.26 -0.23 16 3 C -0.22 -1.71 10.76 -39.90 -0.43 -2.14 16 4 C -0.16 -1.44 10.90 -38.91 -0.42 -1.87 16 5 C -0.01 -0.08 6.84 -38.40 -0.26 -0.34 16 6 C 0.00 0.01 9.39 -39.23 -0.37 -0.36 16 7 C -0.20 -2.36 9.41 -39.25 -0.37 -2.73 16 8 C 0.54 8.12 7.56 -15.00 -0.11 8.00 16 9 O -0.55 -10.20 16.11 5.12 0.08 -10.12 16 10 N -0.71 -10.34 4.95 -63.24 -0.31 -10.65 16 11 C 0.12 2.13 4.56 -4.04 -0.02 2.12 16 12 C -0.06 -1.17 0.54 -154.51 -0.08 -1.25 16 13 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 14 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 15 C 0.00 -0.05 3.11 -27.89 -0.09 -0.14 16 16 C -0.51 -13.71 8.20 -34.44 -0.28 -13.99 16 17 H 0.08 2.21 5.92 -52.49 -0.31 1.90 16 18 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 19 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 20 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 24 O -0.16 -1.73 10.18 4.68 0.05 -1.68 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 29 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.16 1.71 7.46 -52.49 -0.39 1.32 16 31 H 0.13 1.31 7.72 -52.49 -0.41 0.90 16 32 H 0.40 4.94 6.12 -40.82 -0.25 4.69 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 36 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 40 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 41 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 42 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -32.56 354.33 -7.06 -39.61 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.50 Total: 2.13 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -1.82 Total: -15.04 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.46 Total: -37.20 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.13 Total: -11.80 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.56 -7.06 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492843823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.158 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds