Wall clock time and date at job start Tue Mar 31 2020 07:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35157 * 125.48478 * 2 1 4 4 C 1.40308 * 107.20410 * 179.78056 * 3 2 1 5 5 C 1.37950 * 106.53294 * 0.35327 * 4 3 2 6 6 C 1.41604 * 126.10731 * 179.91051 * 5 4 3 7 7 C 1.35623 * 119.99956 * 179.71443 * 6 5 4 8 8 C 1.41553 * 119.99759 * 179.71952 * 7 6 5 9 9 O 1.21773 * 120.00180 * 0.27980 * 8 7 6 10 10 N 1.34777 * 120.00013 * 180.27280 * 8 7 6 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47053 * 300.00247 * 12 11 10 14 14 C 1.53002 * 109.47077 * 59.99546 * 12 11 10 15 15 C 1.52992 * 109.47322 * 179.97438 * 12 11 10 16 16 C 1.50703 * 109.47261 * 179.97438 * 15 12 11 17 17 H 1.08001 * 120.00043 * 0.02562 * 16 15 12 18 18 C 1.37879 * 119.99823 * 180.02562 * 16 15 12 19 19 N 1.31522 * 119.99572 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00297 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47136 * 89.99858 * 20 18 16 22 22 H 1.48501 * 109.46721 * 209.99887 * 20 18 16 23 23 H 1.48504 * 109.46915 * 329.99778 * 20 18 16 24 24 O 1.34017 * 125.48141 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47282 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46747 * 299.97571 * 1 2 3 27 27 H 1.08998 * 109.47179 * 59.96797 * 1 2 3 28 28 H 1.08005 * 126.39639 * 0.02562 * 3 2 1 29 29 H 1.08001 * 126.73601 * 180.22648 * 4 3 2 30 30 H 1.08001 * 120.00223 * 359.71117 * 6 5 4 31 31 H 1.08002 * 120.00354 * 0.02562 * 7 6 5 32 32 H 0.97001 * 120.00145 * 0.02562 * 10 8 7 33 33 H 1.08995 * 109.47424 * 300.00018 * 11 10 8 34 34 H 1.08998 * 109.47492 * 60.00443 * 11 10 8 35 35 H 1.08996 * 109.47135 * 60.00067 * 13 12 11 36 36 H 1.08998 * 109.46756 * 180.02562 * 13 12 11 37 37 H 1.08998 * 109.46853 * 299.99992 * 13 12 11 38 38 H 1.09009 * 109.46796 * 60.00708 * 14 12 11 39 39 H 1.08998 * 109.47195 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47765 * 300.00333 * 14 12 11 41 41 H 1.09000 * 109.47686 * 300.00180 * 15 12 11 42 42 H 1.09007 * 109.47129 * 60.00390 * 15 12 11 43 43 H 0.97001 * 119.99511 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.1005 0.0000 4 6 3.6238 0.6604 0.0051 5 6 3.5818 -0.7184 -0.0001 6 6 4.6999 -1.5874 0.0006 7 6 4.5145 -2.9309 0.0009 8 6 5.6322 -3.7995 -0.0044 9 8 6.7601 -3.3405 -0.0041 10 7 5.4480 -5.1346 -0.0097 11 6 6.6048 -6.0336 -0.0146 12 6 6.1223 -7.4855 -0.0207 13 6 5.2779 -7.7476 1.2280 14 6 5.2759 -7.7365 -1.2704 15 6 7.3303 -8.4244 -0.0265 16 6 6.8550 -9.8545 -0.0319 17 1 5.7971 -10.0720 -0.0317 18 6 7.7708 -10.8852 -0.0371 19 7 7.3560 -12.1333 -0.0413 20 14 9.6005 -10.5091 -0.0367 21 1 10.0864 -10.4156 1.3634 22 1 10.3289 -11.5940 -0.7421 23 1 9.8407 -9.2187 -0.7313 24 8 2.2849 -1.0913 -0.0005 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5135 0.8903 27 1 -0.3633 0.5143 -0.8897 28 1 1.9557 2.1270 0.0004 29 1 4.5087 1.2796 0.0099 30 1 5.7002 -1.1803 0.0009 31 1 3.5142 -3.3381 0.0001 32 1 4.5496 -5.5003 -0.0103 33 1 7.2060 -5.8472 -0.9044 34 1 7.2079 -5.8546 0.8755 35 1 4.4173 -7.0788 1.2316 36 1 4.9346 -8.7821 1.2239 37 1 5.8808 -7.5688 2.1183 38 1 5.8775 -7.5498 -2.1601 39 1 4.9326 -8.7709 -1.2750 40 1 4.4153 -7.0676 -1.2668 41 1 7.9315 -8.2376 -0.9163 42 1 7.9335 -8.2458 0.8637 43 1 8.0002 -12.8585 -0.0453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492843823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:23 Heat of formation + Delta-G solvation = -45.319567 kcal Electronic energy + Delta-G solvation = -22225.105224 eV Core-core repulsion = 18849.984060 eV Total energy + Delta-G solvation = -3375.121165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.57441 -41.03799 -38.79902 -35.39500 -35.17164 -34.25143 -33.99404 -32.13219 -29.83005 -28.61371 -27.99967 -27.05102 -24.76866 -23.45604 -22.87114 -21.54171 -20.71763 -19.60385 -18.90368 -18.43125 -17.44539 -17.28880 -16.75309 -16.38437 -16.16374 -15.68093 -15.20279 -15.19089 -15.06054 -14.24857 -14.17661 -14.08780 -13.92117 -13.89954 -13.79189 -13.55734 -13.25068 -12.94386 -12.84259 -12.72089 -12.62733 -12.31047 -12.17118 -11.77948 -11.66175 -11.52328 -11.34262 -11.01137 -10.90183 -10.77292 -10.70793 -10.06901 -8.84412 -8.22758 -6.22814 -0.60537 1.08694 1.35658 1.38237 1.48575 1.68084 1.87553 2.34168 2.38826 2.43960 3.12512 3.68084 3.85528 3.92189 3.96009 4.05228 4.10353 4.15432 4.26931 4.50106 4.62817 4.68489 4.70529 4.73764 4.76228 4.81906 4.88892 4.94108 5.01053 5.08391 5.13285 5.14331 5.26040 5.29330 5.35731 5.39886 5.47759 5.55461 5.55653 5.68245 5.75950 6.09672 6.37627 6.58368 6.83868 7.23619 7.39794 8.92791 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036266 B = 0.002501 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.898085 B =11194.748821 C =11764.970579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.006 3.994 3 C -0.229 4.229 4 C -0.151 4.151 5 C -0.046 4.046 6 C 0.025 3.975 7 C -0.221 4.221 8 C 0.545 3.455 9 O -0.595 6.595 10 N -0.707 5.707 11 C 0.138 3.862 12 C -0.058 4.058 13 C -0.124 4.124 14 C -0.124 4.124 15 C -0.004 4.004 16 C -0.501 4.501 17 H 0.052 0.948 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.252 1.252 24 O -0.181 6.181 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.178 0.822 29 H 0.175 0.825 30 H 0.160 0.840 31 H 0.145 0.855 32 H 0.412 0.588 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.015 0.985 42 H 0.014 0.986 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.470 28.451 0.095 31.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 C -0.247 4.247 4 C -0.170 4.170 5 C -0.094 4.094 6 C 0.005 3.995 7 C -0.242 4.242 8 C 0.337 3.663 9 O -0.479 6.479 10 N -0.358 5.358 11 C 0.014 3.986 12 C -0.059 4.059 13 C -0.182 4.182 14 C -0.182 4.182 15 C -0.042 4.042 16 C -0.539 4.539 17 H 0.070 0.930 18 C -0.192 4.192 19 N -0.593 5.593 20 Si 0.760 3.240 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.176 1.176 24 O -0.078 6.078 25 H 0.098 0.902 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.196 0.804 29 H 0.193 0.807 30 H 0.177 0.823 31 H 0.162 0.838 32 H 0.250 0.750 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.728 28.244 0.092 31.404 hybrid contribution 0.849 -0.822 0.015 1.182 sum -12.879 27.422 0.107 30.296 Atomic orbital electron populations 1.20617 0.82280 1.05106 1.05579 1.23598 0.95810 0.83711 1.01485 1.21897 0.92143 1.00843 1.09834 1.22766 0.99877 0.92790 1.01582 1.19871 0.82039 0.94143 1.13387 1.20717 0.95864 0.92108 0.90838 1.21965 0.99060 0.94176 1.09000 1.17355 0.89544 0.82963 0.76445 1.90801 1.26967 1.77179 1.52992 1.45933 1.10728 1.05455 1.73721 1.21292 0.87945 0.88347 1.01058 1.20556 0.96678 0.91786 0.96833 1.21710 0.98942 1.01380 0.96137 1.21709 0.98920 1.01396 0.96131 1.19573 0.94507 0.93924 0.96177 1.21363 0.94119 0.90195 1.48266 0.92967 1.25849 1.03346 0.94909 0.95093 1.70046 1.35877 0.99677 1.53657 0.85884 0.80769 0.78520 0.78836 1.19698 1.21421 1.17586 1.84048 1.16560 1.35961 1.71227 0.90206 0.87481 0.87480 0.80425 0.80743 0.82282 0.83762 0.74975 0.92619 0.92541 0.91413 0.93501 0.93624 0.93664 0.93491 0.91411 0.96665 0.96815 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.41 71.24 0.74 0.28 16 2 C 0.01 0.08 7.30 24.98 0.18 0.26 16 3 C -0.23 -2.90 10.76 22.06 0.24 -2.67 16 4 C -0.15 -2.32 10.90 22.71 0.25 -2.07 16 5 C -0.05 -0.90 6.84 23.03 0.16 -0.74 16 6 C 0.02 0.52 9.39 22.49 0.21 0.73 16 7 C -0.22 -5.03 9.41 22.48 0.21 -4.82 16 8 C 0.54 15.85 7.56 85.06 0.64 16.50 16 9 O -0.60 -21.78 16.11 -4.58 -0.07 -21.85 16 10 N -0.71 -19.38 4.95 -472.19 -2.34 -21.72 16 11 C 0.14 4.57 4.56 86.38 0.39 4.97 16 12 C -0.06 -2.11 0.54 -52.18 -0.03 -2.14 16 13 C -0.12 -4.25 8.05 71.98 0.58 -3.67 16 14 C -0.12 -4.25 8.05 71.98 0.58 -3.67 16 15 C 0.00 -0.18 3.11 29.85 0.09 -0.09 16 16 C -0.50 -27.50 8.20 25.60 0.21 -27.29 16 17 H 0.05 3.08 5.92 -2.91 -0.02 3.06 16 18 C 0.00 0.24 5.47 84.65 0.46 0.71 16 19 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 20 Si 0.93 44.89 27.47 68.60 1.88 46.78 16 21 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 24 O -0.18 -3.51 10.18 -6.16 -0.06 -3.58 16 25 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 27 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 29 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.16 3.30 7.46 -2.91 -0.02 3.27 16 31 H 0.14 2.72 7.72 -2.91 -0.02 2.70 16 32 H 0.41 9.18 6.12 -92.71 -0.57 8.61 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 1.80 6.86 -2.39 -0.02 1.79 16 36 H 0.05 1.85 6.62 -2.39 -0.02 1.83 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.05 1.85 6.62 -2.39 -0.02 1.84 16 40 H 0.07 1.81 6.86 -2.39 -0.02 1.79 16 41 H 0.02 0.70 7.20 -2.39 -0.02 0.68 16 42 H 0.01 0.62 7.57 -2.38 -0.02 0.61 16 43 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -71.89 354.33 5.02 -66.87 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.38 Total: 15.97 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 4.92 Total: -23.72 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -2.04 Total: -80.48 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.14 Total: -25.43 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -71.89 5.02 -66.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492843823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.552 kcal (2) G-P(sol) polarization free energy of solvation -71.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds