Wall clock time and date at job start Tue Mar 31 2020 07:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47001 * 2 1 4 4 C 1.38549 * 119.85060 * 90.00266 * 3 2 1 5 5 C 1.38057 * 120.39033 * 179.97438 * 4 3 2 6 6 C 1.38707 * 120.08249 * 0.02562 * 5 4 3 7 7 O 1.35657 * 120.14456 * 179.97438 * 6 5 4 8 8 C 1.40133 * 119.70323 * 359.97438 * 6 5 4 9 9 C 1.47536 * 120.19283 * 179.97438 * 8 6 5 10 10 O 1.21586 * 119.99765 * 31.08795 * 9 8 6 11 11 N 1.34773 * 119.99883 * 211.08860 * 9 8 6 12 12 C 1.46504 * 119.99827 * 141.61995 * 11 9 8 13 13 C 1.50702 * 109.47190 * 89.99921 * 12 11 9 14 14 H 1.07994 * 119.99921 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99718 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00325 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99911 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46952 * 60.00051 * 17 15 13 19 19 H 1.48496 * 109.47165 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47396 * 300.00226 * 17 15 13 21 21 C 1.46501 * 120.00215 * 321.61531 * 11 9 8 22 22 C 1.53000 * 109.47327 * 321.39198 * 21 11 9 23 23 C 1.53001 * 109.46848 * 81.39309 * 21 11 9 24 24 C 1.37790 * 119.85016 * 270.23554 * 3 2 1 25 25 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47120 * 299.99698 * 1 2 3 27 27 H 1.08992 * 109.46964 * 59.99708 * 1 2 3 28 28 H 1.08997 * 109.47034 * 240.00067 * 2 1 3 29 29 H 1.08999 * 109.46931 * 119.99591 * 2 1 3 30 30 H 1.08000 * 119.80343 * 359.95313 * 4 3 2 31 31 H 1.07998 * 119.95668 * 180.02562 * 5 4 3 32 32 H 0.96700 * 113.99903 * 270.01363 * 7 6 5 33 33 H 1.09000 * 109.46998 * 209.99806 * 12 11 9 34 34 H 1.08994 * 109.46853 * 329.99605 * 12 11 9 35 35 H 0.96995 * 120.00116 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.47437 * 201.39352 * 21 11 9 37 37 H 1.09001 * 109.47059 * 49.44175 * 22 21 11 38 38 H 1.08996 * 109.47393 * 169.44393 * 22 21 11 39 39 H 1.08994 * 109.46967 * 289.44689 * 22 21 11 40 40 H 1.09007 * 109.46839 * 97.35855 * 23 21 11 41 41 H 1.09003 * 109.46550 * 217.35039 * 23 21 11 42 42 H 1.08989 * 109.47411 * 337.35522 * 23 21 11 43 43 H 1.07998 * 120.04290 * 0.04113 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0710 1.2017 5 6 2.7229 3.3724 1.2147 6 6 2.9583 4.0386 0.0210 7 8 3.4105 5.3175 0.0324 8 6 2.7271 3.3845 -1.1965 9 6 2.9733 4.0830 -2.4725 10 8 3.8473 4.9251 -2.5457 11 7 2.2296 3.7876 -3.5569 12 6 1.8150 4.8529 -4.4731 13 6 2.8577 5.0255 -5.5474 14 1 3.7405 4.4036 -5.5479 15 6 2.6838 5.9768 -6.5302 16 7 1.6079 6.7331 -6.5305 17 14 3.9765 6.1913 -7.8615 18 1 4.1269 4.9204 -8.6148 19 1 3.5562 7.2710 -8.7902 20 1 5.2745 6.5533 -7.2374 21 6 1.8357 2.4011 -3.8195 22 6 2.9925 1.4658 -3.4619 23 6 0.6133 2.0485 -2.9696 24 6 2.2563 2.0691 -1.1951 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0797 1.5568 2.1337 31 1 2.9001 3.8724 2.1554 32 1 2.7087 5.9828 0.0359 33 1 0.8620 4.5879 -4.9310 34 1 1.7054 5.7856 -3.9199 35 1 1.4858 7.4025 -7.2217 36 1 1.5894 2.2871 -4.8752 37 1 3.3625 1.7098 -2.4660 38 1 2.6431 0.4335 -3.4768 39 1 3.7962 1.5879 -4.1880 40 1 -0.2903 2.1597 -3.5691 41 1 0.6959 1.0179 -2.6245 42 1 0.5635 2.7167 -2.1099 43 1 2.0715 1.5598 -2.1293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536685837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:49 Heat of formation + Delta-G solvation = 19.539752 kcal Electronic energy + Delta-G solvation = -24618.538038 eV Core-core repulsion = 21246.229385 eV Total energy + Delta-G solvation = -3372.308653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06860 -38.34040 -37.50574 -35.87902 -33.46342 -33.34057 -31.65813 -30.39256 -28.56145 -27.24985 -26.91554 -24.01730 -23.60193 -22.69045 -22.10548 -20.62148 -18.35531 -18.11630 -16.50842 -16.24432 -16.07574 -15.78473 -15.07349 -14.90117 -14.46688 -14.34391 -14.05232 -13.82787 -13.67517 -13.18521 -13.00975 -12.63677 -12.43346 -12.22620 -12.16361 -11.81114 -11.63831 -11.30615 -11.16185 -11.11459 -11.03819 -11.00936 -10.80070 -10.61198 -10.51318 -10.05753 -9.67080 -9.59151 -8.94694 -8.61704 -8.37900 -8.34119 -7.48877 -5.98735 -4.02328 1.07383 1.34884 3.18717 3.36688 3.40430 3.45654 3.83671 3.91152 4.38948 4.50460 4.68562 4.75523 4.88309 5.02255 5.07754 5.23003 5.24652 5.28170 5.35402 5.39474 5.44895 5.63816 5.72693 5.74116 5.80816 5.84700 5.87809 5.95263 6.07929 6.10564 6.23181 6.25305 6.39406 6.47571 6.54734 6.62977 6.85657 7.11786 7.35061 7.69888 7.88699 7.98907 8.28426 8.46946 8.91864 9.06440 9.62499 11.08583 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021129 B = 0.005066 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.873285 B = 5526.140742 C = 6282.509028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 C -0.119 4.119 4 C -0.085 4.085 5 C -0.164 4.164 6 C 0.153 3.847 7 O -0.481 6.481 8 C -0.162 4.162 9 C 0.562 3.438 10 O -0.490 6.490 11 N -0.620 5.620 12 C 0.258 3.742 13 C -0.518 4.518 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.901 5.901 17 Si 0.897 3.103 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.140 3.860 22 C -0.214 4.214 23 C -0.182 4.182 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.390 0.610 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 -13.953 14.194 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.119 4.119 4 C -0.104 4.104 5 C -0.182 4.182 6 C 0.107 3.893 7 O -0.291 6.291 8 C -0.166 4.166 9 C 0.348 3.652 10 O -0.363 6.363 11 N -0.355 5.355 12 C 0.139 3.861 13 C -0.557 4.557 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.540 5.540 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.035 3.965 22 C -0.270 4.270 23 C -0.240 4.240 24 C -0.139 4.139 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.247 0.753 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.524 -13.554 14.023 19.819 hybrid contribution 0.211 0.540 -0.667 0.884 sum -3.313 -13.013 13.357 18.940 Atomic orbital electron populations 1.21820 0.94847 1.01610 1.02571 1.20477 0.96120 0.92449 1.02708 1.19848 1.02292 0.96848 0.92915 1.20987 0.97766 0.93975 0.97650 1.21287 1.03334 0.96145 0.97458 1.18530 0.93722 0.86144 0.90875 1.84800 1.35343 1.12802 1.96155 1.20953 1.04526 0.96319 0.94780 1.17910 0.81374 0.82702 0.83194 1.90786 1.26553 1.33851 1.85061 1.47900 1.54771 1.07531 1.25337 1.19203 0.95099 0.84293 0.87519 1.21481 1.06021 1.18851 1.09330 0.92281 1.24936 0.95690 0.95555 0.98053 1.69914 1.26962 1.22355 1.34802 0.86579 0.82123 0.77595 0.81255 1.20327 1.21314 1.20173 1.20984 0.92679 0.82155 1.00677 1.23311 0.99977 0.99211 1.04510 1.22997 0.98832 1.01005 1.01161 1.23923 0.93790 0.94254 1.01926 0.92522 0.92649 0.92022 0.91050 0.91202 0.85999 0.85386 0.75337 0.94793 0.95245 0.92805 0.88485 0.88869 0.91092 0.91438 0.92349 0.91788 0.90946 0.77890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.08 -0.69 6.05 -27.88 -0.17 -0.85 16 3 C -0.12 -1.37 5.13 -104.67 -0.54 -1.91 16 4 C -0.09 -0.96 9.68 -39.53 -0.38 -1.34 16 5 C -0.16 -2.11 9.98 -39.47 -0.39 -2.51 16 6 C 0.15 2.51 6.69 -38.70 -0.26 2.25 16 7 O -0.48 -8.22 12.03 -37.60 -0.45 -8.67 16 8 C -0.16 -2.83 5.01 -104.85 -0.53 -3.36 16 9 C 0.56 12.35 5.88 -12.47 -0.07 12.28 16 10 O -0.49 -12.99 16.08 -13.64 -0.22 -13.21 16 11 N -0.62 -13.32 2.33 -168.69 -0.39 -13.71 16 12 C 0.26 6.69 5.09 -5.19 -0.03 6.67 16 13 C -0.52 -14.90 9.26 -34.44 -0.32 -15.22 16 14 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 17 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 21 C 0.14 2.32 3.19 -67.93 -0.22 2.10 16 22 C -0.21 -3.08 7.74 37.16 0.29 -2.80 16 23 C -0.18 -2.40 7.80 37.16 0.29 -2.11 16 24 C -0.12 -1.71 3.87 -39.20 -0.15 -1.86 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.52 6.79 -51.93 -0.35 0.16 16 28 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 29 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.39 5.05 9.06 45.56 0.41 5.46 16 33 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.03 0.84 8.03 -51.93 -0.42 0.43 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.10 1.66 8.01 -51.93 -0.42 1.25 16 37 H 0.09 1.42 3.53 -67.15 -0.24 1.19 16 38 H 0.07 0.75 7.81 -51.93 -0.41 0.35 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 41 H 0.06 0.65 5.61 -51.93 -0.29 0.36 16 42 H 0.07 1.04 5.54 -51.94 -0.29 0.76 16 43 H 0.21 2.64 0.80 -102.94 -0.08 2.56 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -34.64 339.56 -7.86 -42.49 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.42 Total: 4.55 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -2.21 Total: -7.88 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.34 Total: -39.76 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.67 Total: -21.88 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.64 -7.86 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536685837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.031 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds