Wall clock time and date at job start Tue Mar 31 2020 07:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47001 * 2 1 4 4 C 1.38549 * 119.85060 * 90.00266 * 3 2 1 5 5 C 1.38057 * 120.39033 * 179.97438 * 4 3 2 6 6 C 1.38707 * 120.08249 * 0.02562 * 5 4 3 7 7 O 1.35657 * 120.14456 * 179.97438 * 6 5 4 8 8 C 1.40133 * 119.70323 * 359.97438 * 6 5 4 9 9 C 1.47536 * 120.19283 * 179.97438 * 8 6 5 10 10 O 1.21586 * 119.99765 * 31.08795 * 9 8 6 11 11 N 1.34773 * 119.99883 * 211.08860 * 9 8 6 12 12 C 1.46504 * 119.99827 * 141.61995 * 11 9 8 13 13 C 1.50702 * 109.47190 * 89.99921 * 12 11 9 14 14 H 1.07994 * 119.99921 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99718 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00325 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99911 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46952 * 60.00051 * 17 15 13 19 19 H 1.48496 * 109.47165 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47396 * 300.00226 * 17 15 13 21 21 C 1.46501 * 120.00215 * 321.61531 * 11 9 8 22 22 C 1.53000 * 109.47327 * 321.39198 * 21 11 9 23 23 C 1.53001 * 109.46848 * 81.39309 * 21 11 9 24 24 C 1.37790 * 119.85016 * 270.23554 * 3 2 1 25 25 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47120 * 299.99698 * 1 2 3 27 27 H 1.08992 * 109.46964 * 59.99708 * 1 2 3 28 28 H 1.08997 * 109.47034 * 240.00067 * 2 1 3 29 29 H 1.08999 * 109.46931 * 119.99591 * 2 1 3 30 30 H 1.08000 * 119.80343 * 359.95313 * 4 3 2 31 31 H 1.07998 * 119.95668 * 180.02562 * 5 4 3 32 32 H 0.96700 * 113.99903 * 270.01363 * 7 6 5 33 33 H 1.09000 * 109.46998 * 209.99806 * 12 11 9 34 34 H 1.08994 * 109.46853 * 329.99605 * 12 11 9 35 35 H 0.96995 * 120.00116 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.47437 * 201.39352 * 21 11 9 37 37 H 1.09001 * 109.47059 * 49.44175 * 22 21 11 38 38 H 1.08996 * 109.47393 * 169.44393 * 22 21 11 39 39 H 1.08994 * 109.46967 * 289.44689 * 22 21 11 40 40 H 1.09007 * 109.46839 * 97.35855 * 23 21 11 41 41 H 1.09003 * 109.46550 * 217.35039 * 23 21 11 42 42 H 1.08989 * 109.47411 * 337.35522 * 23 21 11 43 43 H 1.07998 * 120.04290 * 0.04113 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0710 1.2017 5 6 2.7229 3.3724 1.2147 6 6 2.9583 4.0386 0.0210 7 8 3.4105 5.3175 0.0324 8 6 2.7271 3.3845 -1.1965 9 6 2.9733 4.0830 -2.4725 10 8 3.8473 4.9251 -2.5457 11 7 2.2296 3.7876 -3.5569 12 6 1.8150 4.8529 -4.4731 13 6 2.8577 5.0255 -5.5474 14 1 3.7405 4.4036 -5.5479 15 6 2.6838 5.9768 -6.5302 16 7 1.6079 6.7331 -6.5305 17 14 3.9765 6.1913 -7.8615 18 1 4.1269 4.9204 -8.6148 19 1 3.5562 7.2710 -8.7902 20 1 5.2745 6.5533 -7.2374 21 6 1.8357 2.4011 -3.8195 22 6 2.9925 1.4658 -3.4619 23 6 0.6133 2.0485 -2.9696 24 6 2.2563 2.0691 -1.1951 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0797 1.5568 2.1337 31 1 2.9001 3.8724 2.1554 32 1 2.7087 5.9828 0.0359 33 1 0.8620 4.5879 -4.9310 34 1 1.7054 5.7856 -3.9199 35 1 1.4858 7.4025 -7.2217 36 1 1.5894 2.2871 -4.8752 37 1 3.3625 1.7098 -2.4660 38 1 2.6431 0.4335 -3.4768 39 1 3.7962 1.5879 -4.1880 40 1 -0.2903 2.1597 -3.5691 41 1 0.6959 1.0179 -2.6245 42 1 0.5635 2.7167 -2.1099 43 1 2.0715 1.5598 -2.1293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536685837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:49 Heat of formation + Delta-G solvation = -3.219582 kcal Electronic energy + Delta-G solvation = -24619.524957 eV Core-core repulsion = 21246.229385 eV Total energy + Delta-G solvation = -3373.295572 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.36545 -39.69772 -38.83498 -37.29116 -35.39829 -34.24693 -33.46010 -31.63099 -29.58705 -28.99294 -28.24372 -25.53530 -24.68910 -24.00777 -23.60328 -21.69996 -19.69270 -19.43784 -18.65618 -17.55992 -17.52603 -16.99746 -16.67330 -16.36667 -15.97846 -15.60342 -15.41207 -14.88524 -14.71179 -14.46215 -14.20198 -13.97746 -13.72746 -13.70859 -13.43407 -13.19718 -13.02983 -12.77181 -12.76178 -12.51542 -12.28464 -12.24910 -12.07042 -11.94597 -11.77677 -11.72209 -11.65006 -10.82146 -10.69086 -10.55684 -9.77875 -9.39921 -9.23986 -8.20984 -6.35324 -0.09111 0.32052 1.33245 1.38028 1.45370 1.73579 2.25895 2.42298 2.68051 3.06109 3.27743 3.58899 3.71432 3.86536 3.92622 4.09724 4.16761 4.35925 4.39407 4.58561 4.61960 4.65524 4.68984 4.73970 4.79815 4.89650 4.97757 5.03517 5.08064 5.08806 5.17459 5.19574 5.25029 5.34996 5.36318 5.44941 5.56972 5.62377 5.67572 5.89926 5.96345 6.07745 6.70753 6.75552 6.81101 7.22866 7.38604 8.83703 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021129 B = 0.005066 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.873285 B = 5526.140742 C = 6282.509028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 C -0.110 4.110 4 C -0.070 4.070 5 C -0.161 4.161 6 C 0.127 3.873 7 O -0.506 6.506 8 C -0.193 4.193 9 C 0.559 3.441 10 O -0.557 6.557 11 N -0.626 5.626 12 C 0.273 3.727 13 C -0.537 4.537 14 H 0.043 0.957 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.961 3.039 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.284 1.284 21 C 0.127 3.873 22 C -0.209 4.209 23 C -0.171 4.171 24 C -0.117 4.117 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.163 0.837 31 H 0.150 0.850 32 H 0.399 0.601 33 H 0.031 0.969 34 H -0.011 1.011 35 H 0.267 0.733 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.272 -17.503 15.686 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.110 4.110 4 C -0.088 4.088 5 C -0.179 4.179 6 C 0.082 3.918 7 O -0.317 6.317 8 C -0.197 4.197 9 C 0.349 3.651 10 O -0.435 6.435 11 N -0.360 5.360 12 C 0.152 3.848 13 C -0.576 4.576 14 H 0.061 0.939 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.786 3.214 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.210 1.210 21 C 0.024 3.976 22 C -0.265 4.265 23 C -0.228 4.228 24 C -0.134 4.134 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.181 0.819 31 H 0.168 0.832 32 H 0.257 0.743 33 H 0.049 0.951 34 H 0.007 0.993 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.363 -17.158 15.522 23.545 hybrid contribution 0.411 1.599 -1.047 1.954 sum -3.953 -15.559 14.475 21.616 Atomic orbital electron populations 1.21834 0.94130 1.02717 1.02253 1.20602 0.96552 0.90049 1.04503 1.20263 1.00532 0.98350 0.91885 1.21496 0.95066 0.92987 0.99285 1.21525 1.02699 0.96910 0.96770 1.18920 0.95061 0.85980 0.91884 1.84752 1.36721 1.13955 1.96310 1.20664 1.08442 0.98121 0.92459 1.18681 0.79949 0.81871 0.84606 1.90725 1.29583 1.37094 1.86078 1.47911 1.54601 1.08718 1.24757 1.18694 0.94437 0.84466 0.87157 1.21688 1.06107 1.19216 1.10543 0.93853 1.25769 0.97784 0.95035 1.00263 1.70012 1.28429 1.22676 1.35630 0.85570 0.78785 0.78481 0.78575 1.18616 1.19847 1.21013 1.21357 0.95252 0.79831 1.01113 1.23315 0.98492 1.01347 1.03318 1.22875 0.96942 1.02953 1.00058 1.23942 0.93190 0.92710 1.03535 0.90739 0.92632 0.92809 0.89834 0.89040 0.81949 0.83212 0.74275 0.95143 0.99273 0.92392 0.89534 0.89387 0.86049 0.93738 0.91814 0.87731 0.92127 0.77199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 71.98 0.71 -0.89 16 2 C -0.08 -0.92 6.05 29.85 0.18 -0.74 16 3 C -0.11 -2.10 5.13 -19.90 -0.10 -2.21 16 4 C -0.07 -1.28 9.68 22.30 0.22 -1.07 16 5 C -0.16 -3.81 9.98 22.34 0.22 -3.58 16 6 C 0.13 4.23 6.69 22.84 0.15 4.38 16 7 O -0.51 -18.45 12.03 -71.63 -0.86 -19.31 16 8 C -0.19 -6.91 5.01 -20.01 -0.10 -7.01 16 9 C 0.56 26.21 5.88 86.70 0.51 26.72 16 10 O -0.56 -32.08 16.08 14.11 0.23 -31.85 16 11 N -0.63 -28.42 2.33 -805.87 -1.88 -30.30 16 12 C 0.27 15.20 5.09 85.63 0.44 15.64 16 13 C -0.54 -32.53 9.26 25.60 0.24 -32.30 16 14 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 15 C 0.01 0.61 5.46 84.65 0.46 1.07 16 16 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 17 Si 0.96 46.97 29.54 68.60 2.03 49.00 16 18 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 21 C 0.13 4.24 3.19 44.99 0.14 4.38 16 22 C -0.21 -5.78 7.74 71.98 0.56 -5.23 16 23 C -0.17 -4.19 7.80 71.98 0.56 -3.63 16 24 C -0.12 -3.05 3.87 22.52 0.09 -2.96 16 25 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.05 0.66 6.79 -2.39 -0.02 0.64 16 28 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 29 H 0.09 0.75 8.08 -2.39 -0.02 0.73 16 30 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 31 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.40 11.54 9.06 -74.06 -0.67 10.87 16 33 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 34 H -0.01 -0.68 8.03 -2.39 -0.02 -0.69 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.09 3.02 8.01 -2.39 -0.02 3.00 16 37 H 0.09 2.61 3.53 -16.68 -0.06 2.55 16 38 H 0.12 2.10 7.81 -2.39 -0.02 2.08 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.10 1.70 5.61 -2.39 -0.01 1.69 16 42 H 0.06 1.68 5.54 -2.39 -0.01 1.67 16 43 H 0.21 4.94 0.80 -50.31 -0.04 4.90 16 Total: -1.00 -81.94 339.56 4.35 -77.60 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.27 Total: 18.89 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 4.28 Total: -7.43 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -1.60 Total: -86.89 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.63 Total: -51.16 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -81.94 4.35 -77.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536685837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.376 kcal (2) G-P(sol) polarization free energy of solvation -81.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds