Wall clock time and date at job start Tue Mar 31 2020 06:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38533 * 119.81112 * 2 1 4 4 C 1.37790 * 120.30723 * 179.97438 * 3 2 1 5 5 C 1.39714 * 119.90364 * 0.02562 * 4 3 2 6 6 C 1.47540 * 120.18952 * 180.02562 * 5 4 3 7 7 O 1.21585 * 119.99867 * 234.38929 * 6 5 4 8 8 N 1.34772 * 120.00039 * 54.39206 * 6 5 4 9 9 C 1.46503 * 120.00149 * 185.62191 * 8 6 5 10 10 C 1.50698 * 109.47404 * 89.99343 * 9 8 6 11 11 H 1.08002 * 119.99728 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00137 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99914 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99968 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.46917 * 59.99761 * 14 12 10 16 16 H 1.48496 * 109.46721 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46743 * 299.99983 * 14 12 10 18 18 C 1.46505 * 120.00312 * 5.61489 * 8 6 5 19 19 C 1.52999 * 109.46832 * 124.91701 * 18 8 6 20 20 C 1.52997 * 109.47307 * 244.92061 * 18 8 6 21 21 C 1.40135 * 119.61342 * 359.97438 * 5 4 3 22 22 O 1.35653 * 120.14556 * 180.02562 * 21 5 4 23 23 C 1.38059 * 119.80124 * 179.73299 * 2 1 3 24 24 C 1.50707 * 119.95847 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47202 * 89.99390 * 1 2 3 26 26 H 1.09003 * 109.46859 * 329.99945 * 1 2 3 27 27 H 1.09000 * 109.47155 * 209.99841 * 1 2 3 28 28 H 1.08007 * 119.84929 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.05250 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47078 * 209.99924 * 9 8 6 31 31 H 1.09004 * 109.46796 * 330.00035 * 9 8 6 32 32 H 0.96997 * 119.99499 * 179.97438 * 13 12 10 33 33 H 1.09006 * 109.46569 * 4.92087 * 18 8 6 34 34 H 1.09004 * 109.46809 * 60.01115 * 19 18 8 35 35 H 1.09006 * 109.46804 * 179.97438 * 19 18 8 36 36 H 1.08994 * 109.47788 * 300.00352 * 19 18 8 37 37 H 1.09001 * 109.47341 * 60.00319 * 20 18 8 38 38 H 1.09006 * 109.47136 * 179.97438 * 20 18 8 39 39 H 1.08997 * 109.47186 * 299.99696 * 20 18 8 40 40 H 0.96708 * 114.00334 * 89.99853 * 22 21 5 41 41 H 1.08993 * 109.46984 * 90.00000 * 24 23 2 42 42 H 1.08996 * 109.46799 * 210.00040 * 24 23 2 43 43 H 1.09003 * 109.46817 * 329.99885 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2020 0.0000 4 6 3.5735 1.2139 0.0005 5 6 4.2805 0.0089 0.0005 6 6 5.7559 0.0143 0.0017 7 8 6.3667 -0.5962 -0.8542 8 7 6.4266 0.6959 0.9514 9 6 7.8860 0.8041 0.8827 10 6 8.2621 2.0311 0.0928 11 1 7.4912 2.6670 -0.3167 12 6 9.5905 2.3419 -0.1071 13 7 10.5292 1.5673 0.3912 14 14 10.0567 3.8634 -1.0857 15 1 9.5023 5.0693 -0.4198 16 1 11.5360 3.9722 -1.1564 17 1 9.5024 3.7574 -2.4592 18 6 5.6962 1.3288 2.0525 19 6 6.2575 0.8346 3.3873 20 6 5.8551 2.8479 1.9634 21 6 3.5801 -1.2049 0.0005 22 8 4.2557 -2.3812 0.0011 23 6 2.1931 -1.1980 0.0056 24 6 1.4341 -2.5000 0.0122 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5138 28 1 1.6501 2.1342 -0.0004 29 1 4.1063 2.1534 0.0009 30 1 8.2924 0.8824 1.8911 31 1 8.2933 -0.0812 0.3945 32 1 11.4637 1.7858 0.2502 33 1 4.6397 1.0693 1.9842 34 1 7.3140 1.0942 3.4556 35 1 5.7144 1.3059 4.2066 36 1 6.1443 -0.2476 3.4508 37 1 5.4552 3.1999 1.0125 38 1 5.3113 3.3188 2.7824 39 1 6.9115 3.1073 2.0317 40 1 4.4513 -2.7222 0.8847 41 1 1.2508 -2.8188 -1.0138 42 1 2.0202 -3.2595 0.5295 43 1 0.4825 -2.3631 0.5258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564747129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:41 Heat of formation + Delta-G solvation = -60.334752 kcal Electronic energy + Delta-G solvation = -24222.689996 eV Core-core repulsion = 20846.917724 eV Total energy + Delta-G solvation = -3375.772272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40548 -38.54087 -36.88046 -35.81463 -33.52194 -32.69312 -31.05012 -30.77774 -28.21387 -27.22151 -26.82622 -26.15572 -23.19531 -21.96578 -21.79992 -20.73268 -18.51557 -17.77741 -16.69660 -16.50533 -16.17970 -15.61064 -14.96902 -14.58139 -14.28071 -14.12384 -13.75152 -13.74114 -13.29455 -12.99792 -12.97620 -12.83735 -12.44866 -12.36443 -12.13650 -11.82064 -11.69000 -11.58146 -11.47006 -11.35708 -11.13365 -10.93430 -10.82447 -10.55934 -10.42156 -10.34592 -9.99717 -9.53964 -8.95643 -8.52063 -8.44919 -8.37727 -7.61235 -6.01507 -4.05122 1.10122 1.29837 3.30064 3.32789 3.37619 3.41252 3.75007 3.93827 4.24008 4.46483 4.72242 4.80492 4.92470 5.03769 5.15707 5.31435 5.32418 5.35915 5.48606 5.51776 5.58480 5.59670 5.69689 5.70401 5.74149 5.91139 6.01804 6.10580 6.15388 6.27121 6.33104 6.37141 6.42431 6.53286 6.60943 6.81838 6.95580 7.15526 7.50533 7.59777 7.77294 7.95583 8.27297 8.45992 8.92918 9.12591 9.58985 11.06533 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021504 B = 0.004637 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.769879 B = 6037.015865 C = 6197.118580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 C -0.132 4.132 4 C -0.077 4.077 5 C -0.138 4.138 6 C 0.549 3.451 7 O -0.523 6.523 8 N -0.587 5.587 9 C 0.245 3.755 10 C -0.521 4.521 11 H 0.057 0.943 12 C 0.061 3.939 13 N -0.895 5.895 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.130 3.870 19 C -0.160 4.160 20 C -0.159 4.159 21 C 0.147 3.853 22 O -0.480 6.480 23 C -0.121 4.121 24 C -0.107 4.107 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.386 0.614 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.902 -2.497 5.883 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.067 4.067 3 C -0.150 4.150 4 C -0.095 4.095 5 C -0.142 4.142 6 C 0.335 3.665 7 O -0.400 6.400 8 N -0.319 5.319 9 C 0.126 3.874 10 C -0.560 4.560 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.203 1.203 18 C 0.026 3.974 19 C -0.218 4.218 20 C -0.217 4.217 21 C 0.101 3.899 22 O -0.289 6.289 23 C -0.122 4.122 24 C -0.163 4.163 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.242 0.758 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.353 -2.798 4.846 20.146 hybrid contribution 0.518 0.964 -0.099 1.099 sum -18.835 -1.834 4.747 19.510 Atomic orbital electron populations 1.20876 0.91054 1.02869 1.02480 1.19693 0.95970 0.92106 0.98912 1.20915 0.93780 0.97525 1.02753 1.21299 0.93983 0.97273 0.96955 1.20634 0.95230 0.93628 1.04739 1.17979 0.85787 0.80106 0.82606 1.90786 1.68913 1.43054 1.37232 1.48277 1.09834 1.50511 1.23270 1.19282 0.72431 0.98051 0.97638 1.21402 0.91811 1.09033 1.33779 0.92444 1.24918 0.96341 0.96983 0.95808 1.69922 1.00248 1.37827 1.45370 0.86614 0.77262 0.83085 0.80803 1.20266 1.21225 1.20251 1.21066 0.95665 0.93631 0.87059 1.22137 1.02857 1.00698 0.96137 1.22210 1.04397 0.94660 1.00468 1.18210 0.88802 0.84588 0.98260 1.84839 1.76334 1.35039 1.32717 1.19935 0.92491 0.95842 1.03944 1.20686 0.99323 0.93795 1.02538 0.91001 0.91442 0.91087 0.85529 0.84837 0.94569 0.93921 0.92731 0.90508 0.91081 0.92312 0.93043 0.92961 0.93176 0.89903 0.75775 0.91109 0.91525 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.60 36.01 0.35 -0.57 16 2 C -0.07 -0.76 5.88 -104.58 -0.62 -1.38 16 3 C -0.13 -1.59 9.67 -39.64 -0.38 -1.98 16 4 C -0.08 -1.15 7.73 -39.19 -0.30 -1.46 16 5 C -0.14 -2.47 4.58 -104.84 -0.48 -2.95 16 6 C 0.55 12.31 6.79 -12.47 -0.08 12.23 16 7 O -0.52 -14.27 16.32 2.44 0.04 -14.23 16 8 N -0.59 -12.64 2.39 -168.68 -0.40 -13.04 16 9 C 0.24 6.38 4.77 -5.19 -0.02 6.35 16 10 C -0.52 -14.54 7.85 -34.44 -0.27 -14.81 16 11 H 0.06 1.59 7.59 -52.49 -0.40 1.19 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 14 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 18 C 0.13 2.19 2.53 -67.93 -0.17 2.02 16 19 C -0.16 -2.42 9.07 37.16 0.34 -2.09 16 20 C -0.16 -2.61 8.46 37.16 0.31 -2.29 16 21 C 0.15 2.35 6.68 -38.70 -0.26 2.09 16 22 O -0.48 -7.64 11.76 -21.51 -0.25 -7.90 16 23 C -0.12 -1.55 5.89 -104.51 -0.62 -2.17 16 24 C -0.11 -1.04 9.37 36.01 0.34 -0.70 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.07 0.48 5.91 -51.93 -0.31 0.17 16 28 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.13 2.01 6.21 -52.49 -0.33 1.69 16 30 H 0.04 0.94 6.18 -51.93 -0.32 0.62 16 31 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.08 1.16 5.20 -51.93 -0.27 0.89 16 34 H 0.07 1.22 6.52 -51.93 -0.34 0.88 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.86 6.70 -51.93 -0.35 0.51 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 40 H 0.39 4.37 9.06 45.56 0.41 4.79 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.62 7.54 -51.93 -0.39 0.23 16 43 H 0.07 0.52 5.92 -51.93 -0.31 0.21 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -34.58 345.19 -7.09 -41.68 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.43 Total: 3.29 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -1.97 Total: -6.07 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.33 Total: -38.82 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.21 Total: -22.13 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.58 -7.09 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564747129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.656 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds