Wall clock time and date at job start Tue Mar 31 2020 06:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38533 * 119.81112 * 2 1 4 4 C 1.37790 * 120.30723 * 179.97438 * 3 2 1 5 5 C 1.39714 * 119.90364 * 0.02562 * 4 3 2 6 6 C 1.47540 * 120.18952 * 180.02562 * 5 4 3 7 7 O 1.21585 * 119.99867 * 234.38929 * 6 5 4 8 8 N 1.34772 * 120.00039 * 54.39206 * 6 5 4 9 9 C 1.46503 * 120.00149 * 185.62191 * 8 6 5 10 10 C 1.50698 * 109.47404 * 89.99343 * 9 8 6 11 11 H 1.08002 * 119.99728 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00137 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99914 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99968 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.46917 * 59.99761 * 14 12 10 16 16 H 1.48496 * 109.46721 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46743 * 299.99983 * 14 12 10 18 18 C 1.46505 * 120.00312 * 5.61489 * 8 6 5 19 19 C 1.52999 * 109.46832 * 124.91701 * 18 8 6 20 20 C 1.52997 * 109.47307 * 244.92061 * 18 8 6 21 21 C 1.40135 * 119.61342 * 359.97438 * 5 4 3 22 22 O 1.35653 * 120.14556 * 180.02562 * 21 5 4 23 23 C 1.38059 * 119.80124 * 179.73299 * 2 1 3 24 24 C 1.50707 * 119.95847 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47202 * 89.99390 * 1 2 3 26 26 H 1.09003 * 109.46859 * 329.99945 * 1 2 3 27 27 H 1.09000 * 109.47155 * 209.99841 * 1 2 3 28 28 H 1.08007 * 119.84929 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.05250 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47078 * 209.99924 * 9 8 6 31 31 H 1.09004 * 109.46796 * 330.00035 * 9 8 6 32 32 H 0.96997 * 119.99499 * 179.97438 * 13 12 10 33 33 H 1.09006 * 109.46569 * 4.92087 * 18 8 6 34 34 H 1.09004 * 109.46809 * 60.01115 * 19 18 8 35 35 H 1.09006 * 109.46804 * 179.97438 * 19 18 8 36 36 H 1.08994 * 109.47788 * 300.00352 * 19 18 8 37 37 H 1.09001 * 109.47341 * 60.00319 * 20 18 8 38 38 H 1.09006 * 109.47136 * 179.97438 * 20 18 8 39 39 H 1.08997 * 109.47186 * 299.99696 * 20 18 8 40 40 H 0.96708 * 114.00334 * 89.99853 * 22 21 5 41 41 H 1.08993 * 109.46984 * 90.00000 * 24 23 2 42 42 H 1.08996 * 109.46799 * 210.00040 * 24 23 2 43 43 H 1.09003 * 109.46817 * 329.99885 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2020 0.0000 4 6 3.5735 1.2139 0.0005 5 6 4.2805 0.0089 0.0005 6 6 5.7559 0.0143 0.0017 7 8 6.3667 -0.5962 -0.8542 8 7 6.4266 0.6959 0.9514 9 6 7.8860 0.8041 0.8827 10 6 8.2621 2.0311 0.0928 11 1 7.4912 2.6670 -0.3167 12 6 9.5905 2.3419 -0.1071 13 7 10.5292 1.5673 0.3912 14 14 10.0567 3.8634 -1.0857 15 1 9.5023 5.0693 -0.4198 16 1 11.5360 3.9722 -1.1564 17 1 9.5024 3.7574 -2.4592 18 6 5.6962 1.3288 2.0525 19 6 6.2575 0.8346 3.3873 20 6 5.8551 2.8479 1.9634 21 6 3.5801 -1.2049 0.0005 22 8 4.2557 -2.3812 0.0011 23 6 2.1931 -1.1980 0.0056 24 6 1.4341 -2.5000 0.0122 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5138 28 1 1.6501 2.1342 -0.0004 29 1 4.1063 2.1534 0.0009 30 1 8.2924 0.8824 1.8911 31 1 8.2933 -0.0812 0.3945 32 1 11.4637 1.7858 0.2502 33 1 4.6397 1.0693 1.9842 34 1 7.3140 1.0942 3.4556 35 1 5.7144 1.3059 4.2066 36 1 6.1443 -0.2476 3.4508 37 1 5.4552 3.1999 1.0125 38 1 5.3113 3.3188 2.7824 39 1 6.9115 3.1073 2.0317 40 1 4.4513 -2.7222 0.8847 41 1 1.2508 -2.8188 -1.0138 42 1 2.0202 -3.2595 0.5295 43 1 0.4825 -2.3631 0.5258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564747129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:40 Heat of formation + Delta-G solvation = -83.953859 kcal Electronic energy + Delta-G solvation = -24223.714197 eV Core-core repulsion = 20846.917724 eV Total energy + Delta-G solvation = -3376.796473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69648 -40.02562 -38.04574 -37.46873 -35.08189 -34.31662 -32.47437 -31.98783 -29.80422 -28.39123 -28.17000 -27.33866 -25.04840 -23.37244 -22.90910 -22.03143 -19.99771 -18.99500 -18.61604 -18.14506 -17.43858 -17.08701 -16.58081 -16.07928 -15.69876 -15.35300 -15.13336 -14.87129 -14.61424 -14.29138 -14.24510 -13.93122 -13.58420 -13.54077 -13.41156 -13.34234 -13.23300 -12.91284 -12.74897 -12.67462 -12.46399 -12.31812 -12.27900 -12.22635 -12.10574 -11.71467 -11.57030 -11.52899 -10.67252 -10.61614 -9.60384 -9.55367 -9.40956 -8.20935 -6.33560 -0.03261 0.25797 1.34647 1.39269 1.46060 1.80365 2.24317 2.41313 2.59274 3.08601 3.17517 3.56298 3.82481 3.94258 3.97143 4.18053 4.26130 4.29250 4.38043 4.53912 4.62410 4.77037 4.78540 4.81115 4.82706 4.92570 4.97272 4.98520 5.00930 5.09212 5.16603 5.19821 5.32484 5.33115 5.37623 5.38847 5.55341 5.60235 5.61933 5.86475 5.89325 6.08707 6.68937 6.73621 6.77384 7.27232 7.43892 8.86495 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021504 B = 0.004637 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.769879 B = 6037.015865 C = 6197.118580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.053 4.053 3 C -0.122 4.122 4 C -0.083 4.083 5 C -0.172 4.172 6 C 0.544 3.456 7 O -0.592 6.592 8 N -0.587 5.587 9 C 0.263 3.737 10 C -0.530 4.530 11 H 0.055 0.945 12 C 0.008 3.992 13 N -0.929 5.929 14 Si 0.963 3.037 15 H -0.257 1.257 16 H -0.279 1.279 17 H -0.281 1.281 18 C 0.125 3.875 19 C -0.156 4.156 20 C -0.153 4.153 21 C 0.132 3.868 22 O -0.501 6.501 23 C -0.122 4.122 24 C -0.106 4.106 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.163 0.837 29 H 0.128 0.872 30 H 0.031 0.969 31 H -0.010 1.010 32 H 0.266 0.734 33 H 0.103 0.897 34 H 0.043 0.957 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.400 0.600 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.008 -0.861 6.757 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.054 4.054 3 C -0.140 4.140 4 C -0.102 4.102 5 C -0.175 4.175 6 C 0.333 3.667 7 O -0.473 6.473 8 N -0.317 5.317 9 C 0.142 3.858 10 C -0.569 4.569 11 H 0.073 0.927 12 C -0.191 4.191 13 N -0.569 5.569 14 Si 0.787 3.213 15 H -0.182 1.182 16 H -0.204 1.204 17 H -0.207 1.207 18 C 0.022 3.978 19 C -0.213 4.213 20 C -0.211 4.211 21 C 0.086 3.914 22 O -0.313 6.313 23 C -0.122 4.122 24 C -0.162 4.162 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.180 0.820 29 H 0.146 0.854 30 H 0.049 0.951 31 H 0.008 0.992 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.258 0.742 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -23.498 -1.140 5.777 24.224 hybrid contribution 1.681 0.396 -0.333 1.759 sum -21.816 -0.744 5.443 22.498 Atomic orbital electron populations 1.20999 0.87707 1.04769 1.03710 1.20222 0.98212 0.91113 0.95821 1.21282 0.92334 0.99450 1.00906 1.21315 0.95418 0.95798 0.97671 1.20341 0.91924 0.95901 1.09365 1.18790 0.88011 0.78560 0.81323 1.90723 1.70915 1.45919 1.39760 1.48290 1.08247 1.50604 1.24599 1.18723 0.75537 0.95244 0.96335 1.21614 0.92087 1.09311 1.33869 0.92724 1.25818 0.96269 1.00221 0.96797 1.70052 1.00611 1.39648 1.46612 0.85545 0.77215 0.79732 0.78805 1.18173 1.20439 1.20666 1.21435 0.96525 0.93799 0.85998 1.22111 1.01548 1.01169 0.96497 1.22144 1.02638 0.94318 1.02009 1.18497 0.90175 0.83696 0.99047 1.84787 1.76860 1.35358 1.34301 1.20264 0.91077 0.98016 1.02891 1.20773 1.00259 0.92170 1.03029 0.89845 0.89398 0.89472 0.81974 0.85404 0.95101 0.99232 0.92537 0.87878 0.93824 0.88271 0.92944 0.93397 0.88924 0.93382 0.74161 0.91016 0.91487 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.60 71.24 0.68 -0.48 16 2 C -0.05 -1.00 5.88 -19.84 -0.12 -1.12 16 3 C -0.12 -2.50 9.67 22.23 0.21 -2.29 16 4 C -0.08 -2.41 7.73 22.52 0.17 -2.24 16 5 C -0.17 -6.23 4.58 -20.01 -0.09 -6.32 16 6 C 0.54 25.93 6.79 86.70 0.59 26.51 16 7 O -0.59 -34.99 16.32 -1.26 -0.02 -35.01 16 8 N -0.59 -26.70 2.39 -805.86 -1.92 -28.62 16 9 C 0.26 14.70 4.77 85.63 0.41 15.10 16 10 C -0.53 -31.01 7.85 25.60 0.20 -30.81 16 11 H 0.05 3.15 7.59 -2.91 -0.02 3.13 16 12 C 0.01 0.45 5.46 84.65 0.46 0.91 16 13 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 14 Si 0.96 45.79 29.54 68.60 2.03 47.81 16 15 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 18 C 0.12 4.18 2.53 44.99 0.11 4.29 16 19 C -0.16 -4.63 9.07 71.98 0.65 -3.98 16 20 C -0.15 -4.89 8.46 71.98 0.61 -4.28 16 21 C 0.13 4.19 6.68 22.84 0.15 4.34 16 22 O -0.50 -16.62 11.76 -86.96 -1.02 -17.64 16 23 C -0.12 -2.82 5.89 -19.79 -0.12 -2.93 16 24 C -0.11 -1.74 9.37 71.24 0.67 -1.08 16 25 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 27 H 0.09 0.64 5.91 -2.39 -0.01 0.63 16 28 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.13 3.76 6.21 -2.91 -0.02 3.74 16 30 H 0.03 1.74 6.18 -2.39 -0.01 1.72 16 31 H -0.01 -0.69 7.35 -2.39 -0.02 -0.71 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.10 2.96 5.20 -2.38 -0.01 2.95 16 34 H 0.04 1.53 6.52 -2.38 -0.02 1.52 16 35 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.55 6.70 -2.39 -0.02 1.53 16 38 H 0.09 2.14 8.14 -2.38 -0.02 2.13 16 39 H 0.05 1.87 6.92 -2.39 -0.02 1.85 16 40 H 0.40 9.63 9.06 -74.05 -0.67 8.96 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.10 7.54 -2.39 -0.02 1.09 16 43 H 0.10 1.01 5.92 -2.39 -0.01 1.00 16 Total: -1.00 -82.30 345.19 4.31 -77.99 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.36 Total: 16.92 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 4.60 Total: -4.37 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.64 Total: -85.71 kcal Atomic # 8 Polarization: -51.61 SS G_CDS: -1.04 Total: -52.65 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -82.30 4.31 -77.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564747129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.962 kcal (2) G-P(sol) polarization free energy of solvation -82.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds