Wall clock time and date at job start Tue Mar 31 2020 06:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37641 * 120.09937 * 2 1 4 4 C 1.39244 * 119.94841 * 179.97438 * 3 2 1 5 5 N 1.39007 * 119.92752 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00300 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47703 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99993 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00413 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00057 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00118 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47126 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46942 * 120.00196 * 11 9 7 14 14 H 1.48503 * 109.47199 * 240.00212 * 11 9 7 15 15 C 1.39239 * 120.14339 * 359.97438 * 4 3 2 16 16 C 1.36570 * 120.20618 * 0.04465 * 15 4 3 17 17 C 1.39856 * 120.10096 * 179.97438 * 2 1 3 18 18 C 1.47383 * 120.07347 * 359.75034 * 17 2 1 19 19 O 1.21514 * 119.99656 * 354.00946 * 18 17 2 20 20 O 1.34762 * 120.00003 * 174.01900 * 18 17 2 21 21 C 1.45201 * 116.99722 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.47013 * 60.00344 * 21 20 18 23 23 C 1.52999 * 109.46699 * 179.97438 * 21 20 18 24 24 C 1.52992 * 109.47190 * 299.99689 * 21 20 18 25 25 H 1.09000 * 109.46937 * 263.48673 * 1 2 3 26 26 H 1.08998 * 109.46985 * 23.49007 * 1 2 3 27 27 H 1.09000 * 109.46990 * 143.48537 * 1 2 3 28 28 H 1.07995 * 120.02925 * 359.95802 * 3 2 1 29 29 H 0.97006 * 120.00323 * 0.02562 * 5 4 3 30 30 H 1.09004 * 109.47100 * 300.00499 * 6 5 4 31 31 H 1.09003 * 109.47206 * 60.00045 * 6 5 4 32 32 H 0.96998 * 120.00394 * 179.97438 * 10 9 7 33 33 H 1.08002 * 119.89168 * 180.02562 * 15 4 3 34 34 H 1.07998 * 119.97408 * 179.97438 * 16 15 4 35 35 H 1.08994 * 109.47054 * 59.99533 * 22 21 20 36 36 H 1.09001 * 109.47056 * 179.97438 * 22 21 20 37 37 H 1.09002 * 109.46591 * 299.99484 * 22 21 20 38 38 H 1.09008 * 109.47007 * 60.00401 * 23 21 20 39 39 H 1.09001 * 109.46871 * 180.02562 * 23 21 20 40 40 H 1.09003 * 109.47444 * 300.00424 * 23 21 20 41 41 H 1.09003 * 109.47441 * 60.00524 * 24 21 20 42 42 H 1.09001 * 109.46975 * 180.02562 * 24 21 20 43 43 H 1.08995 * 109.47350 * 299.99903 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1908 0.0000 4 6 3.5897 1.1871 0.0005 5 7 4.2863 2.3900 0.0000 6 6 5.7513 2.3881 0.0000 7 6 6.2556 3.8081 0.0000 8 1 5.5549 4.6301 -0.0004 9 6 7.6115 4.0583 -0.0005 10 7 8.4648 3.0575 -0.0016 11 14 8.2366 5.8186 -0.0013 12 1 7.0828 6.7536 -0.0005 13 1 9.0623 6.0511 1.2109 14 1 9.0615 6.0505 -1.2141 15 6 4.2857 -0.0188 0.0016 16 6 3.6070 -1.2039 0.0012 17 6 2.2084 -1.2100 0.0005 18 6 1.4754 -2.4886 0.0067 19 8 0.2656 -2.4947 0.1211 20 8 2.1467 -3.6507 -0.1144 21 6 1.3600 -4.8711 -0.0997 22 6 0.3633 -4.8493 -1.2604 23 6 2.2885 -6.0781 -0.2481 24 6 0.5995 -4.9717 1.2240 25 1 -0.3633 -0.1166 1.0210 26 1 -0.3633 0.9425 -0.4096 27 1 -0.3633 -0.8259 -0.6115 28 1 1.6594 2.1273 -0.0007 29 1 3.8025 3.2308 -0.0004 30 1 6.1140 1.8741 0.8902 31 1 6.1140 1.8734 -0.8898 32 1 9.4187 3.2334 -0.0023 33 1 5.3657 -0.0169 0.0025 34 1 4.1506 -2.1371 0.0017 35 1 0.9052 -4.7776 -2.2033 36 1 -0.2270 -5.7655 -1.2496 37 1 -0.2981 -3.9893 -1.1550 38 1 2.9989 -6.0938 0.5785 39 1 1.6979 -6.9942 -0.2375 40 1 2.8301 -6.0062 -1.1913 41 1 -0.0620 -4.1118 1.3293 42 1 0.0093 -5.8880 1.2351 43 1 1.3096 -4.9873 2.0507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564867744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:16 Heat of formation + Delta-G solvation = -76.320807 kcal Electronic energy + Delta-G solvation = -22917.619934 eV Core-core repulsion = 19541.154454 eV Total energy + Delta-G solvation = -3376.465479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67919 -39.01782 -36.86971 -35.23183 -34.04866 -32.83104 -31.96505 -29.75132 -27.50909 -27.48115 -27.13460 -26.47557 -23.36514 -22.74377 -21.98524 -19.93451 -19.45458 -17.36982 -17.31279 -16.45191 -15.81305 -15.67209 -15.29765 -14.79912 -14.54217 -14.39932 -13.67298 -13.59396 -13.58348 -13.23544 -12.93728 -12.74451 -12.59827 -12.27240 -12.17430 -12.13853 -12.09047 -11.97281 -11.67662 -11.59393 -11.43153 -11.13060 -11.01102 -10.94112 -10.59464 -10.32320 -10.25989 -9.58487 -9.50316 -9.47210 -8.66409 -8.43478 -6.82166 -6.30577 -4.36813 1.35044 1.87003 2.88482 3.00433 3.16431 3.24366 3.27334 4.13001 4.27214 4.37237 4.62968 4.68112 4.81341 4.95960 5.07126 5.16532 5.22634 5.34908 5.41118 5.57280 5.60975 5.64539 5.71796 5.73875 5.81259 5.86675 5.92562 5.98394 6.14860 6.16207 6.19985 6.22365 6.45092 6.59716 6.75018 6.83776 6.93676 6.98349 7.24934 7.26387 7.52790 7.81117 8.04855 8.16256 8.45757 8.74134 9.30181 10.79879 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029903 B = 0.002940 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.127828 B = 9522.987572 C =10255.875135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.035 3.965 3 C -0.238 4.238 4 C 0.274 3.726 5 N -0.709 5.709 6 C 0.244 3.756 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.065 3.935 10 N -0.887 5.887 11 Si 0.905 3.095 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.281 1.281 15 C -0.222 4.222 16 C -0.006 4.006 17 C -0.230 4.230 18 C 0.521 3.479 19 O -0.521 6.521 20 O -0.351 6.351 21 C 0.118 3.882 22 C -0.182 4.182 23 C -0.141 4.141 24 C -0.182 4.182 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.395 0.605 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.267 0.733 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.516 -13.881 -0.309 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.033 3.967 3 C -0.261 4.261 4 C 0.159 3.841 5 N -0.327 5.327 6 C 0.123 3.877 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.139 4.139 10 N -0.524 5.524 11 Si 0.732 3.268 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.207 1.207 15 C -0.245 4.245 16 C -0.025 4.025 17 C -0.234 4.234 18 C 0.371 3.629 19 O -0.413 6.413 20 O -0.269 6.269 21 C 0.081 3.919 22 C -0.239 4.239 23 C -0.198 4.198 24 C -0.239 4.239 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.140 0.860 29 H 0.229 0.771 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.374 -13.912 -0.278 19.300 hybrid contribution 0.367 1.174 0.029 1.231 sum -13.008 -12.738 -0.250 18.207 Atomic orbital electron populations 1.21062 0.90813 1.02517 1.03087 1.19539 0.95634 0.90822 0.90681 1.20326 0.91951 0.97571 1.16289 1.18333 0.90999 0.87650 0.87139 1.45676 1.08990 1.04197 1.73856 1.19281 0.73021 0.98220 0.97192 1.21200 0.92217 0.91481 1.53244 0.91813 1.24928 0.96520 0.97981 0.94462 1.69942 1.02614 1.30924 1.48940 0.86337 0.78938 0.83695 0.77851 1.19615 1.20693 1.20686 1.20482 1.00717 0.90717 1.12574 1.20788 0.92442 0.97945 0.91333 1.18445 0.93290 0.89211 1.22444 1.21068 0.85836 0.83949 0.72092 1.90635 1.15216 1.87547 1.47902 1.86626 1.41678 1.14585 1.83996 1.22065 0.91174 0.82469 0.96159 1.22484 0.99835 1.04099 0.97452 1.21843 0.99545 0.95098 1.03290 1.22477 1.01301 1.04006 0.96088 0.90995 0.92666 0.89216 0.85980 0.77070 0.95549 0.95535 0.92362 0.85021 0.85490 0.92153 0.91512 0.89640 0.91510 0.90676 0.91517 0.89613 0.91520 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 8.72 36.00 0.31 -1.30 16 2 C 0.03 0.55 5.91 -104.24 -0.62 -0.07 16 3 C -0.24 -3.88 9.51 -39.43 -0.37 -4.25 16 4 C 0.27 5.03 6.65 -83.86 -0.56 4.48 16 5 N -0.71 -14.16 5.70 -59.81 -0.34 -14.50 16 6 C 0.24 5.87 4.65 -5.20 -0.02 5.84 16 7 C -0.54 -14.13 9.28 -34.44 -0.32 -14.45 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -24.70 13.29 55.43 0.74 -23.97 16 11 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 C -0.22 -4.02 9.23 -39.81 -0.37 -4.38 16 16 C -0.01 -0.09 9.55 -39.58 -0.38 -0.47 16 17 C -0.23 -3.74 5.88 -104.96 -0.62 -4.35 16 18 C 0.52 8.00 7.12 34.45 0.25 8.24 16 19 O -0.52 -8.07 8.88 -19.28 -0.17 -8.24 16 20 O -0.35 -4.93 9.14 -40.66 -0.37 -5.30 16 21 C 0.12 1.32 1.13 -90.62 -0.10 1.21 16 22 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 23 C -0.14 -1.22 8.85 37.16 0.33 -0.89 16 24 C -0.18 -1.93 8.37 37.15 0.31 -1.62 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.65 8.04 -51.93 -0.42 0.24 16 27 H 0.09 1.28 5.86 -51.93 -0.30 0.97 16 28 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 29 H 0.40 7.27 8.32 -40.82 -0.34 6.93 16 30 H 0.03 0.68 7.93 -51.93 -0.41 0.27 16 31 H 0.03 0.69 7.93 -51.93 -0.41 0.28 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.13 2.49 6.69 -52.49 -0.35 2.14 16 34 H 0.13 1.84 7.61 -52.49 -0.40 1.44 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.06 5.88 -51.93 -0.31 0.76 16 38 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -27.76 349.80 -8.43 -36.19 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.59 Total: 7.26 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.94 Total: -11.98 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.40 Total: -38.47 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.54 Total: -13.54 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.76 -8.43 -36.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564867744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.132 kcal (2) G-P(sol) polarization free energy of solvation -27.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds