Wall clock time and date at job start Tue Mar 31 2020 06:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37641 * 120.09937 * 2 1 4 4 C 1.39244 * 119.94841 * 179.97438 * 3 2 1 5 5 N 1.39007 * 119.92752 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00300 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47703 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99993 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00413 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00057 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00118 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47126 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46942 * 120.00196 * 11 9 7 14 14 H 1.48503 * 109.47199 * 240.00212 * 11 9 7 15 15 C 1.39239 * 120.14339 * 359.97438 * 4 3 2 16 16 C 1.36570 * 120.20618 * 0.04465 * 15 4 3 17 17 C 1.39856 * 120.10096 * 179.97438 * 2 1 3 18 18 C 1.47383 * 120.07347 * 359.75034 * 17 2 1 19 19 O 1.21514 * 119.99656 * 354.00946 * 18 17 2 20 20 O 1.34762 * 120.00003 * 174.01900 * 18 17 2 21 21 C 1.45201 * 116.99722 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.47013 * 60.00344 * 21 20 18 23 23 C 1.52999 * 109.46699 * 179.97438 * 21 20 18 24 24 C 1.52992 * 109.47190 * 299.99689 * 21 20 18 25 25 H 1.09000 * 109.46937 * 263.48673 * 1 2 3 26 26 H 1.08998 * 109.46985 * 23.49007 * 1 2 3 27 27 H 1.09000 * 109.46990 * 143.48537 * 1 2 3 28 28 H 1.07995 * 120.02925 * 359.95802 * 3 2 1 29 29 H 0.97006 * 120.00323 * 0.02562 * 5 4 3 30 30 H 1.09004 * 109.47100 * 300.00499 * 6 5 4 31 31 H 1.09003 * 109.47206 * 60.00045 * 6 5 4 32 32 H 0.96998 * 120.00394 * 179.97438 * 10 9 7 33 33 H 1.08002 * 119.89168 * 180.02562 * 15 4 3 34 34 H 1.07998 * 119.97408 * 179.97438 * 16 15 4 35 35 H 1.08994 * 109.47054 * 59.99533 * 22 21 20 36 36 H 1.09001 * 109.47056 * 179.97438 * 22 21 20 37 37 H 1.09002 * 109.46591 * 299.99484 * 22 21 20 38 38 H 1.09008 * 109.47007 * 60.00401 * 23 21 20 39 39 H 1.09001 * 109.46871 * 180.02562 * 23 21 20 40 40 H 1.09003 * 109.47444 * 300.00424 * 23 21 20 41 41 H 1.09003 * 109.47441 * 60.00524 * 24 21 20 42 42 H 1.09001 * 109.46975 * 180.02562 * 24 21 20 43 43 H 1.08995 * 109.47350 * 299.99903 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1908 0.0000 4 6 3.5897 1.1871 0.0005 5 7 4.2863 2.3900 0.0000 6 6 5.7513 2.3881 0.0000 7 6 6.2556 3.8081 0.0000 8 1 5.5549 4.6301 -0.0004 9 6 7.6115 4.0583 -0.0005 10 7 8.4648 3.0575 -0.0016 11 14 8.2366 5.8186 -0.0013 12 1 7.0828 6.7536 -0.0005 13 1 9.0623 6.0511 1.2109 14 1 9.0615 6.0505 -1.2141 15 6 4.2857 -0.0188 0.0016 16 6 3.6070 -1.2039 0.0012 17 6 2.2084 -1.2100 0.0005 18 6 1.4754 -2.4886 0.0067 19 8 0.2656 -2.4947 0.1211 20 8 2.1467 -3.6507 -0.1144 21 6 1.3600 -4.8711 -0.0997 22 6 0.3633 -4.8493 -1.2604 23 6 2.2885 -6.0781 -0.2481 24 6 0.5995 -4.9717 1.2240 25 1 -0.3633 -0.1166 1.0210 26 1 -0.3633 0.9425 -0.4096 27 1 -0.3633 -0.8259 -0.6115 28 1 1.6594 2.1273 -0.0007 29 1 3.8025 3.2308 -0.0004 30 1 6.1140 1.8741 0.8902 31 1 6.1140 1.8734 -0.8898 32 1 9.4187 3.2334 -0.0023 33 1 5.3657 -0.0169 0.0025 34 1 4.1506 -2.1371 0.0017 35 1 0.9052 -4.7776 -2.2033 36 1 -0.2270 -5.7655 -1.2496 37 1 -0.2981 -3.9893 -1.1550 38 1 2.9989 -6.0938 0.5785 39 1 1.6979 -6.9942 -0.2375 40 1 2.8301 -6.0062 -1.1913 41 1 -0.0620 -4.1118 1.3293 42 1 0.0093 -5.8880 1.2351 43 1 1.3096 -4.9873 2.0507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564867744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:15 Heat of formation + Delta-G solvation = -89.918873 kcal Electronic energy + Delta-G solvation = -22918.209590 eV Core-core repulsion = 19541.154454 eV Total energy + Delta-G solvation = -3377.055136 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.82772 -40.33499 -38.03899 -36.76709 -35.03342 -34.69957 -33.26960 -31.31440 -28.64825 -28.31247 -28.25544 -27.97335 -24.89517 -24.31724 -23.23374 -21.24198 -20.57711 -19.14263 -18.51729 -17.53875 -17.33136 -16.98205 -16.87983 -16.12820 -15.92333 -15.39920 -15.11664 -14.87630 -14.84151 -14.47105 -14.25560 -14.17779 -13.87187 -13.51502 -13.43250 -13.11322 -13.08616 -13.00937 -12.80963 -12.76842 -12.71144 -12.64002 -12.39120 -12.24509 -12.01676 -11.80406 -11.43306 -11.29066 -11.15161 -10.62168 -10.60596 -9.76201 -8.34292 -8.32527 -6.46210 0.02330 0.52393 1.41014 1.41851 1.54380 1.72574 1.83603 2.32241 2.74859 2.92167 3.03731 3.76986 3.85388 3.86359 3.87563 3.98453 4.02552 4.35348 4.49484 4.53586 4.63727 4.65916 4.81129 4.81436 4.86787 4.88802 4.91958 4.92950 4.95446 5.08515 5.15143 5.22176 5.25536 5.32178 5.34210 5.36555 5.43822 5.50199 5.57605 5.75204 5.81640 5.94338 6.36761 6.66468 6.98400 7.01965 7.26526 8.79184 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029903 B = 0.002940 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.127828 B = 9522.987572 C =10255.875135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.030 3.970 3 C -0.228 4.228 4 C 0.254 3.746 5 N -0.715 5.715 6 C 0.265 3.735 7 C -0.558 4.558 8 H 0.073 0.927 9 C 0.011 3.989 10 N -0.924 5.924 11 Si 0.976 3.024 12 H -0.261 1.261 13 H -0.278 1.278 14 H -0.278 1.278 15 C -0.238 4.238 16 C -0.002 4.002 17 C -0.232 4.232 18 C 0.521 3.479 19 O -0.521 6.521 20 O -0.359 6.359 21 C 0.105 3.895 22 C -0.178 4.178 23 C -0.137 4.137 24 C -0.178 4.178 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.403 0.597 30 H -0.001 1.001 31 H 0.000 1.000 32 H 0.269 0.731 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.155 -14.276 -0.359 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.028 3.972 3 C -0.251 4.251 4 C 0.142 3.858 5 N -0.336 5.336 6 C 0.142 3.858 7 C -0.596 4.596 8 H 0.091 0.909 9 C -0.189 4.189 10 N -0.563 5.563 11 Si 0.800 3.200 12 H -0.185 1.185 13 H -0.204 1.204 14 H -0.203 1.203 15 C -0.261 4.261 16 C -0.021 4.021 17 C -0.236 4.236 18 C 0.370 3.630 19 O -0.414 6.414 20 O -0.277 6.277 21 C 0.069 3.931 22 C -0.235 4.235 23 C -0.194 4.194 24 C -0.235 4.235 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.163 0.837 29 H 0.238 0.762 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.078 0.922 33 H 0.131 0.869 34 H 0.160 0.840 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.061 -14.339 -0.329 20.798 hybrid contribution 0.752 1.088 0.044 1.323 sum -14.309 -13.251 -0.285 19.505 Atomic orbital electron populations 1.21043 0.88877 1.03481 1.03411 1.19870 0.97019 0.90410 0.89873 1.20528 0.90886 0.98828 1.14844 1.18527 0.91972 0.86999 0.88282 1.45266 1.07187 1.05177 1.75993 1.18729 0.75511 0.96928 0.94624 1.21596 0.92775 0.92426 1.52829 0.90938 1.25878 0.96810 1.02296 0.93953 1.70066 1.02996 1.33250 1.49960 0.85237 0.78457 0.78517 0.77808 1.18461 1.20350 1.20332 1.20467 1.00041 0.91716 1.13868 1.20895 0.92759 0.97837 0.90610 1.18754 0.93348 0.90335 1.21185 1.20880 0.85700 0.84183 0.72209 1.90644 1.15187 1.87771 1.47752 1.86612 1.42414 1.15100 1.83609 1.22487 0.91896 0.81958 0.96739 1.22448 0.99516 1.04452 0.97089 1.21877 0.99464 0.94802 1.03262 1.22441 1.01052 1.04299 0.95713 0.90454 0.90543 0.89790 0.83711 0.76173 0.98281 0.98254 0.92162 0.86879 0.84023 0.92252 0.89007 0.91704 0.91550 0.88055 0.91546 0.91756 0.89001 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.81 8.72 71.23 0.62 -2.19 16 2 C 0.03 0.90 5.91 -19.62 -0.12 0.79 16 3 C -0.23 -7.18 9.51 22.37 0.21 -6.97 16 4 C 0.25 9.48 6.65 38.49 0.26 9.74 16 5 N -0.71 -29.23 5.70 -343.15 -1.96 -31.19 16 6 C 0.26 13.32 4.65 85.63 0.40 13.72 16 7 C -0.56 -29.52 9.28 25.60 0.24 -29.28 16 8 H 0.07 3.61 7.60 -2.91 -0.02 3.59 16 9 C 0.01 0.58 5.46 84.65 0.46 1.04 16 10 N -0.92 -52.81 13.29 21.45 0.28 -52.52 16 11 Si 0.98 41.63 29.54 68.60 2.03 43.66 16 12 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 13 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 15 C -0.24 -8.94 9.23 22.12 0.20 -8.74 16 16 C 0.00 -0.06 9.55 22.27 0.21 0.15 16 17 C -0.23 -7.40 5.88 -20.09 -0.12 -7.52 16 18 C 0.52 15.54 7.12 70.23 0.50 16.04 16 19 O -0.52 -15.59 8.88 19.79 0.18 -15.41 16 20 O -0.36 -9.73 9.14 -56.73 -0.52 -10.25 16 21 C 0.10 2.15 1.13 -10.80 -0.01 2.14 16 22 C -0.18 -3.41 8.37 71.98 0.60 -2.81 16 23 C -0.14 -2.04 8.85 71.98 0.64 -1.40 16 24 C -0.18 -3.44 8.37 71.98 0.60 -2.84 16 25 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.08 1.59 8.04 -2.39 -0.02 1.57 16 27 H 0.08 2.24 5.86 -2.39 -0.01 2.23 16 28 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 29 H 0.40 14.86 8.32 -92.70 -0.77 14.09 16 30 H 0.00 -0.04 7.93 -2.39 -0.02 -0.05 16 31 H 0.00 -0.02 7.93 -2.39 -0.02 -0.04 16 32 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.11 4.62 6.69 -2.91 -0.02 4.60 16 34 H 0.14 4.12 7.61 -2.91 -0.02 4.09 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 38 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.54 5.88 -2.39 -0.01 1.52 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -60.38 349.80 4.95 -55.43 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.24 Total: 28.41 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 4.70 Total: -18.14 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -1.67 Total: -83.71 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.34 Total: -25.66 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -60.38 4.95 -55.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564867744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.488 kcal (2) G-P(sol) polarization free energy of solvation -60.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds