Wall clock time and date at job start Tue Mar 31 2020 07:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34520 * 125.78625 * 2 1 4 4 C 1.41381 * 106.83580 * 180.29744 * 3 2 1 5 5 C 1.34513 * 106.84363 * 359.57150 * 4 3 2 6 6 C 1.50697 * 125.78872 * 180.11927 * 5 4 3 7 7 C 1.50694 * 109.47275 * 90.33905 * 6 5 4 8 8 O 1.21282 * 120.00104 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99878 * 179.97438 * 7 6 5 10 10 C 1.46919 * 120.63153 * 359.72039 * 9 7 6 11 11 C 1.53622 * 108.54472 * 126.36784 * 10 9 7 12 12 C 1.53048 * 109.24069 * 54.85687 * 11 10 9 13 13 C 1.52999 * 109.45816 * 178.49164 * 12 11 10 14 14 C 1.50703 * 109.46904 * 295.06395 * 13 12 11 15 15 H 1.07999 * 120.00172 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99791 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99924 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00089 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47039 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47233 * 120.00065 * 18 16 14 21 21 H 1.48496 * 109.47434 * 240.00519 * 18 16 14 22 22 C 1.53042 * 109.53649 * 298.51205 * 12 11 10 23 23 C 1.46931 * 120.62601 * 179.97438 * 9 7 6 24 24 O 1.34302 * 125.79164 * 180.02562 * 2 1 3 25 25 H 1.08994 * 109.47275 * 90.00361 * 1 2 3 26 26 H 1.08999 * 109.46770 * 210.00580 * 1 2 3 27 27 H 1.09001 * 109.47333 * 330.00254 * 1 2 3 28 28 H 1.08002 * 126.57789 * 0.02807 * 3 2 1 29 29 H 1.08009 * 126.57222 * 179.73218 * 4 3 2 30 30 H 1.08994 * 109.47121 * 210.34003 * 6 5 4 31 31 H 1.09003 * 109.47065 * 330.33649 * 6 5 4 32 32 H 1.09005 * 109.58787 * 246.20433 * 10 9 7 33 33 H 1.09000 * 109.58653 * 6.62644 * 10 9 7 34 34 H 1.09000 * 109.63813 * 294.86602 * 11 10 9 35 35 H 1.09005 * 109.46087 * 174.73598 * 11 10 9 36 36 H 1.09000 * 109.45020 * 58.52583 * 12 11 10 37 37 H 1.08991 * 109.47296 * 55.06905 * 13 12 11 38 38 H 1.08996 * 109.46786 * 175.07065 * 13 12 11 39 39 H 0.96998 * 120.00010 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.49259 * 301.41303 * 22 12 11 41 41 H 1.08996 * 109.52197 * 181.33258 * 22 12 11 42 42 H 1.08995 * 109.59059 * 353.37700 * 23 9 7 43 43 H 1.09004 * 109.58089 * 113.66015 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0070 5 6 3.5814 -0.7121 -0.0013 6 6 4.7706 -1.6377 -0.0029 7 6 5.1684 -1.9470 1.4173 8 8 4.5476 -1.4631 2.3400 9 7 6.2140 -2.7615 1.6621 10 6 6.9719 -3.3601 0.5550 11 6 8.4603 -3.0328 0.7485 12 6 8.9029 -3.4994 2.1373 13 6 10.3939 -3.2098 2.3211 14 6 11.1905 -4.0395 1.3474 15 1 10.6840 -4.7064 0.6654 16 6 12.5661 -3.9465 1.3265 17 7 13.1829 -3.1341 2.1567 18 14 13.5535 -4.9744 0.1192 19 1 12.6296 -5.8002 -0.6992 20 1 14.3352 -4.0783 -0.7703 21 1 14.4805 -5.8615 0.8667 22 6 8.1028 -2.7528 3.2071 23 6 6.6141 -3.0720 3.0414 24 8 2.2925 -1.0894 -0.0005 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.9664 2.1205 0.0004 29 1 4.5212 1.2435 -0.0130 30 1 4.5103 -2.5628 -0.5170 31 1 5.6035 -1.1582 -0.5173 32 1 6.8293 -4.4408 0.5567 33 1 6.6252 -2.9453 -0.3915 34 1 8.6133 -1.9572 0.6602 35 1 9.0472 -3.5474 -0.0123 36 1 8.7265 -4.5707 2.2335 37 1 10.5839 -2.1523 2.1378 38 1 10.6899 -3.4610 3.3396 39 1 14.1505 -3.0683 2.1417 40 1 8.2592 -1.6798 3.0956 41 1 8.4346 -3.0680 4.1963 42 1 6.0312 -2.4671 3.7359 43 1 6.4406 -4.1291 3.2430 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567590971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:33 Heat of formation + Delta-G solvation = -42.508023 kcal Electronic energy + Delta-G solvation = -22950.980016 eV Core-core repulsion = 19575.980769 eV Total energy + Delta-G solvation = -3374.999247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.66119 -39.99337 -37.37254 -34.06258 -33.27619 -33.18264 -32.15461 -30.99979 -29.83820 -28.00799 -25.50400 -24.33550 -22.88719 -22.02445 -21.71135 -20.42074 -19.77369 -18.70223 -17.27374 -16.69908 -16.31843 -16.02454 -15.46112 -15.43129 -14.56481 -14.41064 -13.79338 -13.71482 -13.67035 -13.26840 -13.16986 -13.01727 -12.90225 -12.86786 -12.64003 -12.22998 -12.20482 -11.88134 -11.67277 -11.22949 -11.00986 -10.83763 -10.73918 -10.48857 -10.14840 -9.93684 -9.82884 -9.64232 -9.30641 -8.99307 -8.40706 -8.37601 -8.33672 -6.03051 -4.05262 1.59952 2.51155 2.63984 2.76215 3.21421 3.27651 3.35864 3.38235 4.39719 4.42315 4.57271 4.74334 4.93132 4.96094 5.06484 5.14804 5.19440 5.28476 5.31563 5.36688 5.44524 5.45754 5.49637 5.63751 5.70373 5.76001 5.89727 5.96034 6.04084 6.06440 6.33495 6.35023 6.46679 6.49176 6.64234 6.92199 6.95330 7.07121 7.09887 7.50357 7.63984 7.78076 7.96649 8.22028 8.38617 9.01562 9.58777 11.08198 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033835 B = 0.002827 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.343123 B = 9903.470091 C =10193.435947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.017 4.017 3 C -0.210 4.210 4 C -0.194 4.194 5 C 0.008 3.992 6 C -0.061 4.061 7 C 0.514 3.486 8 O -0.540 6.540 9 N -0.604 5.604 10 C 0.100 3.900 11 C -0.119 4.119 12 C -0.081 4.081 13 C 0.027 3.973 14 C -0.516 4.516 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.129 4.129 23 C 0.113 3.887 24 O -0.172 6.172 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.088 4.183 -5.876 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 C -0.229 4.229 4 C -0.213 4.213 5 C -0.042 4.042 6 C -0.100 4.100 7 C 0.302 3.698 8 O -0.417 6.417 9 N -0.338 5.338 10 C -0.022 4.022 11 C -0.157 4.157 12 C -0.099 4.099 13 C -0.010 4.010 14 C -0.554 4.554 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.167 4.167 23 C -0.009 4.009 24 O -0.068 6.068 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.164 0.836 29 H 0.165 0.835 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.343 4.194 -5.328 22.394 hybrid contribution 0.986 -0.344 -0.639 1.224 sum -20.357 3.850 -5.966 21.560 Atomic orbital electron populations 1.20274 0.85262 1.03996 1.03257 1.22373 0.93894 0.84197 1.06269 1.21518 0.92683 0.99265 1.09463 1.21508 0.98274 0.93703 1.07836 1.21477 0.82523 0.93911 1.06299 1.20155 0.93491 0.99983 0.96420 1.20303 0.80134 0.78674 0.90727 1.90706 1.53199 1.51811 1.46032 1.48156 1.30297 1.47097 1.08231 1.22094 0.93495 0.98233 0.88384 1.21989 0.92236 1.01721 0.99791 1.21194 0.98286 0.98328 0.92138 1.19130 0.87844 0.96974 0.97064 1.21269 0.91269 1.23882 1.19007 0.92532 1.25035 0.98112 0.95549 0.95844 1.69974 1.08790 1.37442 1.37214 0.86587 0.80257 0.80241 0.81206 1.19759 1.21099 1.21097 1.22019 0.93022 1.01233 1.00451 1.21669 0.96577 1.00518 0.82168 1.83910 1.16248 1.35124 1.71564 0.90269 0.90645 0.89449 0.83610 0.83542 0.87186 0.85717 0.91215 0.90432 0.92160 0.89592 0.92307 0.96627 0.96579 0.93082 0.92059 0.91092 0.89703 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.42 36.01 0.38 -0.14 16 2 C -0.02 -0.20 7.32 -35.62 -0.26 -0.46 16 3 C -0.21 -2.44 10.81 -39.70 -0.43 -2.87 16 4 C -0.19 -2.47 10.81 -39.70 -0.43 -2.90 16 5 C 0.01 0.11 5.81 -35.63 -0.21 -0.10 16 6 C -0.06 -0.69 4.58 -29.04 -0.13 -0.82 16 7 C 0.51 7.63 7.69 -10.98 -0.08 7.54 16 8 O -0.54 -10.07 15.45 5.56 0.09 -9.99 16 9 N -0.60 -8.58 2.97 -172.53 -0.51 -9.09 16 10 C 0.10 1.26 6.37 -3.49 -0.02 1.24 16 11 C -0.12 -1.93 5.21 -26.38 -0.14 -2.07 16 12 C -0.08 -1.51 2.10 -90.57 -0.19 -1.70 16 13 C 0.03 0.65 4.45 -27.88 -0.12 0.53 16 14 C -0.52 -13.70 8.39 -34.44 -0.29 -13.99 16 15 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 18 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.13 -2.14 5.36 -26.63 -0.14 -2.28 16 23 C 0.11 1.67 6.43 -3.73 -0.02 1.65 16 24 O -0.17 -2.37 10.65 5.71 0.06 -2.31 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.11 0.99 7.93 -51.93 -0.41 0.58 16 31 H 0.12 1.12 7.70 -51.93 -0.40 0.72 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.48 6.91 -51.93 -0.36 1.12 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.32 7.01 -51.93 -0.36 0.96 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -33.16 350.93 -8.40 -41.56 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.84 Total: -0.91 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.20 Total: -14.93 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.22 Total: -34.65 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.15 Total: -12.30 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.16 -8.40 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567590971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.943 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds