Wall clock time and date at job start Tue Mar 31 2020 07:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34520 * 125.78625 * 2 1 4 4 C 1.41381 * 106.83580 * 180.29744 * 3 2 1 5 5 C 1.34513 * 106.84363 * 359.57150 * 4 3 2 6 6 C 1.50697 * 125.78872 * 180.11927 * 5 4 3 7 7 C 1.50694 * 109.47275 * 90.33905 * 6 5 4 8 8 O 1.21282 * 120.00104 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99878 * 179.97438 * 7 6 5 10 10 C 1.46919 * 120.63153 * 359.72039 * 9 7 6 11 11 C 1.53622 * 108.54472 * 126.36784 * 10 9 7 12 12 C 1.53048 * 109.24069 * 54.85687 * 11 10 9 13 13 C 1.52999 * 109.45816 * 178.49164 * 12 11 10 14 14 C 1.50703 * 109.46904 * 295.06395 * 13 12 11 15 15 H 1.07999 * 120.00172 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99791 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99924 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00089 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47039 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47233 * 120.00065 * 18 16 14 21 21 H 1.48496 * 109.47434 * 240.00519 * 18 16 14 22 22 C 1.53042 * 109.53649 * 298.51205 * 12 11 10 23 23 C 1.46931 * 120.62601 * 179.97438 * 9 7 6 24 24 O 1.34302 * 125.79164 * 180.02562 * 2 1 3 25 25 H 1.08994 * 109.47275 * 90.00361 * 1 2 3 26 26 H 1.08999 * 109.46770 * 210.00580 * 1 2 3 27 27 H 1.09001 * 109.47333 * 330.00254 * 1 2 3 28 28 H 1.08002 * 126.57789 * 0.02807 * 3 2 1 29 29 H 1.08009 * 126.57222 * 179.73218 * 4 3 2 30 30 H 1.08994 * 109.47121 * 210.34003 * 6 5 4 31 31 H 1.09003 * 109.47065 * 330.33649 * 6 5 4 32 32 H 1.09005 * 109.58787 * 246.20433 * 10 9 7 33 33 H 1.09000 * 109.58653 * 6.62644 * 10 9 7 34 34 H 1.09000 * 109.63813 * 294.86602 * 11 10 9 35 35 H 1.09005 * 109.46087 * 174.73598 * 11 10 9 36 36 H 1.09000 * 109.45020 * 58.52583 * 12 11 10 37 37 H 1.08991 * 109.47296 * 55.06905 * 13 12 11 38 38 H 1.08996 * 109.46786 * 175.07065 * 13 12 11 39 39 H 0.96998 * 120.00010 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.49259 * 301.41303 * 22 12 11 41 41 H 1.08996 * 109.52197 * 181.33258 * 22 12 11 42 42 H 1.08995 * 109.59059 * 353.37700 * 23 9 7 43 43 H 1.09004 * 109.58089 * 113.66015 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0070 5 6 3.5814 -0.7121 -0.0013 6 6 4.7706 -1.6377 -0.0029 7 6 5.1684 -1.9470 1.4173 8 8 4.5476 -1.4631 2.3400 9 7 6.2140 -2.7615 1.6621 10 6 6.9719 -3.3601 0.5550 11 6 8.4603 -3.0328 0.7485 12 6 8.9029 -3.4994 2.1373 13 6 10.3939 -3.2098 2.3211 14 6 11.1905 -4.0395 1.3474 15 1 10.6840 -4.7064 0.6654 16 6 12.5661 -3.9465 1.3265 17 7 13.1829 -3.1341 2.1567 18 14 13.5535 -4.9744 0.1192 19 1 12.6296 -5.8002 -0.6992 20 1 14.3352 -4.0783 -0.7703 21 1 14.4805 -5.8615 0.8667 22 6 8.1028 -2.7528 3.2071 23 6 6.6141 -3.0720 3.0414 24 8 2.2925 -1.0894 -0.0005 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.9664 2.1205 0.0004 29 1 4.5212 1.2435 -0.0130 30 1 4.5103 -2.5628 -0.5170 31 1 5.6035 -1.1582 -0.5173 32 1 6.8293 -4.4408 0.5567 33 1 6.6252 -2.9453 -0.3915 34 1 8.6133 -1.9572 0.6602 35 1 9.0472 -3.5474 -0.0123 36 1 8.7265 -4.5707 2.2335 37 1 10.5839 -2.1523 2.1378 38 1 10.6899 -3.4610 3.3396 39 1 14.1505 -3.0683 2.1417 40 1 8.2592 -1.6798 3.0956 41 1 8.4346 -3.0680 4.1963 42 1 6.0312 -2.4671 3.7359 43 1 6.4406 -4.1291 3.2430 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567590971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:33 Heat of formation + Delta-G solvation = -61.475434 kcal Electronic energy + Delta-G solvation = -22951.802505 eV Core-core repulsion = 19575.980769 eV Total energy + Delta-G solvation = -3375.821735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.54907 -41.17379 -38.72254 -35.69849 -34.33056 -34.09049 -33.75607 -32.16308 -30.76387 -29.67308 -26.70346 -25.69961 -24.13120 -23.46434 -22.73663 -21.53449 -20.97749 -19.92958 -18.44458 -18.31014 -17.65140 -16.99737 -16.57957 -16.48546 -16.47127 -15.38590 -15.13555 -15.01892 -14.68121 -14.47451 -14.36137 -14.07614 -13.91048 -13.75699 -13.72189 -13.51551 -13.38923 -12.99161 -12.97204 -12.69300 -12.53215 -12.49780 -12.29388 -12.10630 -11.72252 -11.35522 -11.15035 -10.90781 -10.82886 -10.76556 -10.51396 -9.62640 -9.20608 -8.14941 -6.24365 0.70135 1.42555 1.43717 1.54284 1.55714 1.61542 1.90161 2.17790 2.44224 3.19186 3.49925 3.64078 3.95785 3.98146 4.05412 4.12186 4.14182 4.22454 4.24655 4.38574 4.43815 4.56679 4.59831 4.69766 4.72280 4.82814 4.86395 4.89846 4.92551 4.97477 5.07105 5.12437 5.28228 5.32985 5.35257 5.43053 5.56091 5.61176 5.64425 5.84081 5.91611 6.21396 6.30153 6.40212 6.93248 7.09850 7.44626 8.97304 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033835 B = 0.002827 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.343123 B = 9903.470091 C =10193.435947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.026 4.026 3 C -0.227 4.227 4 C -0.210 4.210 5 C -0.015 4.015 6 C -0.055 4.055 7 C 0.512 3.488 8 O -0.585 6.585 9 N -0.605 5.605 10 C 0.108 3.892 11 C -0.115 4.115 12 C -0.074 4.074 13 C 0.031 3.969 14 C -0.523 4.523 15 H 0.070 0.930 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.961 3.039 19 H -0.255 1.255 20 H -0.283 1.283 21 H -0.285 1.285 22 C -0.121 4.121 23 C 0.119 3.881 24 O -0.191 6.191 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.151 0.849 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.064 0.936 37 H -0.016 1.016 38 H -0.017 1.017 39 H 0.260 0.740 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.729 3.122 -8.091 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 C -0.246 4.246 4 C -0.229 4.229 5 C -0.065 4.065 6 C -0.094 4.094 7 C 0.301 3.699 8 O -0.466 6.466 9 N -0.337 5.337 10 C -0.014 4.014 11 C -0.154 4.154 12 C -0.092 4.092 13 C -0.006 4.006 14 C -0.561 4.561 15 H 0.088 0.912 16 C -0.203 4.203 17 N -0.580 5.580 18 Si 0.786 3.214 19 H -0.178 1.178 20 H -0.209 1.209 21 H -0.211 1.211 22 C -0.159 4.159 23 C -0.004 4.004 24 O -0.089 6.089 25 H 0.117 0.883 26 H 0.096 0.904 27 H 0.124 0.876 28 H 0.184 0.816 29 H 0.172 0.828 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.107 0.893 33 H 0.134 0.866 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.003 0.997 38 H 0.002 0.998 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.992 3.117 -7.567 24.405 hybrid contribution 1.493 0.048 0.115 1.498 sum -21.499 3.165 -7.452 22.973 Atomic orbital electron populations 1.20476 0.82440 1.04996 1.04803 1.23217 0.95621 0.83725 1.04997 1.21878 0.92421 1.00501 1.09799 1.21838 0.99235 0.94092 1.07738 1.21861 0.82951 0.94550 1.07116 1.20264 0.93656 1.01341 0.94121 1.20930 0.79488 0.77604 0.91837 1.90687 1.54719 1.53385 1.47775 1.48240 1.30304 1.46947 1.08215 1.22176 0.90291 0.99564 0.89345 1.21887 0.95138 1.00814 0.97516 1.21046 0.94562 0.98911 0.94708 1.19033 0.91953 0.94751 0.94855 1.21707 0.91693 1.23650 1.19012 0.91191 1.25993 0.99652 0.96861 0.97783 1.70126 1.09063 1.39475 1.39354 0.85456 0.78636 0.78520 0.78788 1.17844 1.20912 1.21133 1.21892 0.94375 0.99893 0.99763 1.21531 0.94502 1.01349 0.82984 1.83901 1.16753 1.36241 1.71971 0.88338 0.90410 0.87645 0.81576 0.82782 0.84313 0.83156 0.89347 0.86552 0.93273 0.90258 0.91805 0.99732 0.99835 0.93131 0.93621 0.91290 0.90619 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.42 71.24 0.74 -0.13 16 2 C -0.03 -0.57 7.32 24.83 0.18 -0.38 16 3 C -0.23 -5.02 10.81 22.19 0.24 -4.78 16 4 C -0.21 -5.17 10.81 22.19 0.24 -4.93 16 5 C -0.01 -0.38 5.81 24.83 0.14 -0.23 16 6 C -0.05 -1.09 4.58 29.10 0.13 -0.96 16 7 C 0.51 14.32 7.69 87.65 0.67 14.99 16 8 O -0.59 -21.64 15.45 -3.04 -0.05 -21.68 16 9 N -0.60 -15.87 2.97 -818.15 -2.43 -18.30 16 10 C 0.11 2.33 6.37 86.51 0.55 2.88 16 11 C -0.12 -3.56 5.21 30.82 0.16 -3.40 16 12 C -0.07 -2.74 2.10 -10.76 -0.02 -2.76 16 13 C 0.03 1.57 4.45 29.85 0.13 1.70 16 14 C -0.52 -27.85 8.39 25.60 0.21 -27.63 16 15 H 0.07 3.47 7.06 -2.91 -0.02 3.45 16 16 C -0.01 -0.34 5.46 84.66 0.46 0.13 16 17 N -0.94 -56.65 13.29 21.45 0.28 -56.36 16 18 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 19 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 22 C -0.12 -4.04 5.36 30.66 0.16 -3.88 16 23 C 0.12 3.41 6.43 86.35 0.55 3.96 16 24 O -0.19 -5.08 10.65 -2.47 -0.03 -5.10 16 25 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 30 H 0.14 1.94 7.93 -2.39 -0.02 1.92 16 31 H 0.15 2.17 7.70 -2.39 -0.02 2.15 16 32 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.12 1.67 5.93 -2.39 -0.01 1.66 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 2.57 6.91 -2.38 -0.02 2.55 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 38 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.08 2.35 7.01 -2.39 -0.02 2.33 16 43 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -74.47 350.93 5.37 -69.10 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.98 Total: 12.92 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 4.57 Total: -25.42 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -2.14 Total: -74.67 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.07 Total: -26.79 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -74.47 5.37 -69.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567590971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.625 kcal (2) G-P(sol) polarization free energy of solvation -74.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds