Wall clock time and date at job start Tue Mar 31 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38252 * 119.91215 * 2 1 4 4 C 1.38223 * 120.15962 * 179.74509 * 3 2 1 5 5 C 1.38720 * 119.98076 * 0.52547 * 4 3 2 6 6 N 1.39966 * 120.09167 * 179.74740 * 5 4 3 7 7 C 1.46506 * 119.99872 * 359.72351 * 6 5 4 8 8 C 1.50696 * 109.46871 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00319 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99717 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.39315 * 119.82087 * 359.47480 * 5 4 3 17 17 O 1.36011 * 120.08204 * 180.25572 * 16 5 4 18 18 C 1.42902 * 117.00343 * 180.02562 * 17 16 5 19 19 C 1.53000 * 109.47244 * 179.97438 * 18 17 16 20 20 H 1.09003 * 110.32971 * 307.24793 * 19 18 17 21 21 C 1.54481 * 110.36743 * 184.99752 * 19 18 17 22 22 C 1.54512 * 104.05709 * 217.18652 * 21 19 18 23 23 C 1.54473 * 104.06453 * 0.02562 * 22 21 19 24 24 O 1.44418 * 104.80512 * 23.97833 * 23 22 21 25 25 C 1.38280 * 119.90934 * 180.02562 * 2 1 3 26 26 H 1.08995 * 109.47588 * 269.98040 * 1 2 3 27 27 H 1.09000 * 109.46825 * 29.98167 * 1 2 3 28 28 H 1.08997 * 109.47385 * 149.97796 * 1 2 3 29 29 H 1.08005 * 119.91923 * 0.02562 * 3 2 1 30 30 H 1.08004 * 120.00973 * 180.29971 * 4 3 2 31 31 H 0.97000 * 120.00462 * 179.72937 * 6 5 4 32 32 H 1.09005 * 109.46943 * 60.00146 * 7 6 5 33 33 H 1.09002 * 109.47064 * 300.00409 * 7 6 5 34 34 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.46268 * 299.99934 * 18 17 16 36 36 H 1.08994 * 109.46954 * 59.98918 * 18 17 16 37 37 H 1.08991 * 110.51376 * 335.83056 * 21 19 18 38 38 H 1.09003 * 110.51101 * 98.41009 * 21 19 18 39 39 H 1.08998 * 110.50921 * 118.65234 * 22 21 19 40 40 H 1.09008 * 110.50927 * 241.21596 * 22 21 19 41 41 H 1.08999 * 110.37111 * 142.80914 * 23 22 21 42 42 H 1.08994 * 110.37310 * 265.14359 * 23 22 21 43 43 H 1.08001 * 119.99116 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1984 0.0000 4 6 3.5786 1.2043 0.0053 5 6 4.2770 0.0058 -0.0004 6 7 5.6767 0.0092 -0.0003 7 6 6.4061 1.2797 -0.0004 8 6 7.8884 1.0079 0.0003 9 1 8.2508 -0.0095 0.0003 10 6 8.7818 2.0581 0.0008 11 7 10.0754 1.8209 0.0009 12 14 8.1548 3.8177 0.0015 13 1 7.9889 4.2847 -1.3984 14 1 6.8464 3.8767 0.7013 15 1 9.1308 4.6906 0.7021 16 6 3.5815 -1.2013 -0.0003 17 8 4.2609 -2.3796 -0.0006 18 6 3.4821 -3.5777 -0.0011 19 6 4.4135 -4.7915 -0.0020 20 1 5.1346 -4.7149 -0.8158 21 6 3.5962 -6.0963 -0.1288 22 6 4.3451 -7.0979 0.7785 23 6 5.5258 -6.2797 1.3465 24 8 5.0933 -4.9040 1.2675 25 6 2.1965 -1.1986 -0.0005 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3634 -0.8897 -0.5141 29 1 1.6536 2.1321 0.0004 30 1 4.1147 2.1419 0.0102 31 1 6.1638 -0.8297 -0.0003 32 1 6.1414 1.8507 0.8896 33 1 6.1414 1.8506 -0.8904 34 1 10.7039 2.5598 0.0009 35 1 2.8531 -3.6024 0.8888 36 1 2.8533 -3.6019 -0.8911 37 1 2.5776 -5.9452 0.2285 38 1 3.5900 -6.4443 -1.1617 39 1 3.6967 -7.4420 1.5842 40 1 4.7090 -7.9436 0.1949 41 1 5.7169 -6.5584 2.3828 42 1 6.4191 -6.4319 0.7409 43 1 1.6548 -2.1330 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567702944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:48 Heat of formation + Delta-G solvation = -64.996288 kcal Electronic energy + Delta-G solvation = -22957.043689 eV Core-core repulsion = 19581.069278 eV Total energy + Delta-G solvation = -3375.974411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.07929 -39.31513 -37.18430 -35.37247 -32.72624 -32.36277 -31.23053 -30.69019 -29.40338 -27.87596 -25.99192 -24.83716 -22.95986 -22.07298 -21.35199 -21.16269 -20.13442 -17.81430 -17.21726 -16.53997 -16.31033 -15.93634 -15.62007 -15.45831 -14.76673 -14.37286 -13.98267 -13.87692 -13.56504 -13.47337 -13.29845 -13.11962 -13.10421 -12.43625 -12.12932 -12.04133 -11.95182 -11.73951 -11.57349 -11.43730 -11.12597 -10.93102 -10.88490 -10.85231 -10.52418 -10.47078 -9.93954 -9.87039 -9.40965 -9.28075 -8.64015 -8.09972 -6.38186 -6.16399 -4.17380 1.84921 2.04989 3.25437 3.32147 3.34706 3.35285 3.70267 4.27031 4.31681 4.33501 4.44954 4.54732 4.66064 4.90495 4.97393 5.07872 5.17680 5.18642 5.23549 5.28037 5.29624 5.42606 5.46647 5.54152 5.61853 5.63156 5.72886 5.76966 5.78131 5.95076 5.99859 6.09764 6.33773 6.56664 6.67834 6.69651 6.79002 7.06465 7.07165 7.25447 7.43379 7.67212 8.08663 8.50458 8.71526 8.90262 9.43210 10.96297 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.004550 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.893003 B = 6152.346908 C = 8431.910512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.139 4.139 3 C -0.098 4.098 4 C -0.180 4.180 5 C 0.213 3.787 6 N -0.716 5.716 7 C 0.224 3.776 8 C -0.537 4.537 9 H 0.079 0.921 10 C 0.075 3.925 11 N -0.894 5.894 12 Si 0.878 3.122 13 H -0.273 1.273 14 H -0.263 1.263 15 H -0.283 1.283 16 C 0.041 3.959 17 O -0.309 6.309 18 C 0.073 3.927 19 C 0.076 3.924 20 H 0.081 0.919 21 C -0.147 4.147 22 C -0.154 4.154 23 C 0.041 3.959 24 O -0.359 6.359 25 C -0.159 4.159 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.403 0.597 32 H 0.017 0.983 33 H 0.012 0.988 34 H 0.267 0.733 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.654 -13.768 -0.387 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C -0.117 4.117 4 C -0.204 4.204 5 C 0.105 3.895 6 N -0.341 5.341 7 C 0.101 3.899 8 C -0.575 4.575 9 H 0.097 0.903 10 C -0.128 4.128 11 N -0.531 5.531 12 Si 0.705 3.295 13 H -0.199 1.199 14 H -0.188 1.188 15 H -0.209 1.209 16 C -0.007 4.007 17 O -0.223 6.223 18 C -0.003 4.003 19 C 0.018 3.982 20 H 0.099 0.901 21 C -0.185 4.185 22 C -0.192 4.192 23 C -0.036 4.036 24 O -0.278 6.278 25 C -0.179 4.179 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.144 0.856 31 H 0.238 0.762 32 H 0.035 0.965 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.070 -13.345 -0.225 21.669 hybrid contribution -0.149 0.368 -0.152 0.425 sum -17.219 -12.977 -0.377 21.565 Atomic orbital electron populations 1.20570 0.91989 1.01656 1.01245 1.19218 0.95156 0.92468 1.07365 1.20595 0.93290 0.96915 1.00859 1.20497 0.93951 0.96168 1.09791 1.17451 0.85222 0.90674 0.96184 1.45091 1.00865 1.10194 1.77945 1.19476 0.92506 0.82495 0.95398 1.21089 0.88099 0.95764 1.52529 0.90316 1.24823 0.94652 0.99195 0.94129 1.69891 1.01170 1.32295 1.49776 0.86806 0.79322 0.84561 0.78817 1.19904 1.18759 1.20910 1.18364 0.90355 0.84402 1.07575 1.86042 1.34705 1.11571 1.90027 1.22674 0.93344 0.82729 1.01525 1.23022 0.93929 0.93068 0.88204 0.90100 1.22902 1.00221 0.94340 1.01045 1.22935 0.97941 0.98661 0.99656 1.23422 0.96328 0.81810 1.02038 1.89290 1.75021 1.27052 1.36397 1.20666 0.91882 0.98181 1.07152 0.92306 0.92272 0.92628 0.86753 0.85561 0.76219 0.96525 0.96985 0.92351 0.91669 0.91192 0.90372 0.90001 0.90598 0.90402 0.88991 0.92045 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.01 36.00 0.36 -0.71 16 2 C -0.14 -2.04 5.88 -104.60 -0.62 -2.66 16 3 C -0.10 -1.54 9.69 -39.58 -0.38 -1.92 16 4 C -0.18 -3.35 9.31 -39.41 -0.37 -3.72 16 5 C 0.21 4.31 6.67 -83.56 -0.56 3.76 16 6 N -0.72 -16.20 5.72 -59.66 -0.34 -16.54 16 7 C 0.22 5.56 3.74 -5.19 -0.02 5.54 16 8 C -0.54 -15.36 9.83 -34.44 -0.34 -15.70 16 9 H 0.08 2.42 7.84 -52.49 -0.41 2.01 16 10 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 11 N -0.89 -27.21 13.96 55.43 0.77 -26.44 16 12 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 C 0.04 0.75 6.70 -39.08 -0.26 0.48 16 17 O -0.31 -5.41 9.38 -19.82 -0.19 -5.60 16 18 C 0.07 0.94 4.35 37.16 0.16 1.10 16 19 C 0.08 0.90 3.57 -25.95 -0.09 0.80 16 20 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 21 C -0.15 -1.19 6.63 -25.16 -0.17 -1.36 16 22 C -0.15 -1.16 7.09 -25.16 -0.18 -1.34 16 23 C 0.04 0.41 7.63 37.93 0.29 0.70 16 24 O -0.36 -5.13 11.34 -35.27 -0.40 -5.53 16 25 C -0.16 -2.43 8.69 -39.47 -0.34 -2.77 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.13 2.38 6.74 -52.48 -0.35 2.02 16 31 H 0.40 9.25 7.68 -40.82 -0.31 8.93 16 32 H 0.02 0.42 7.00 -51.93 -0.36 0.06 16 33 H 0.01 0.30 7.39 -51.93 -0.38 -0.08 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.07 0.80 7.66 -51.93 -0.40 0.41 16 36 H 0.07 0.74 7.66 -51.93 -0.40 0.34 16 37 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.12 1.46 6.30 -52.49 -0.33 1.13 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -32.16 349.57 -8.92 -41.07 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.75 Total: 6.88 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -2.61 Total: -15.73 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.43 Total: -42.98 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.59 Total: -11.13 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.16 -8.92 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567702944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.924 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds