Wall clock time and date at job start Tue Mar 31 2020 06:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38252 * 119.91215 * 2 1 4 4 C 1.38223 * 120.15962 * 179.74509 * 3 2 1 5 5 C 1.38720 * 119.98076 * 0.52547 * 4 3 2 6 6 N 1.39966 * 120.09167 * 179.74740 * 5 4 3 7 7 C 1.46506 * 119.99872 * 359.72351 * 6 5 4 8 8 C 1.50696 * 109.46871 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00319 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99717 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.39315 * 119.82087 * 359.47480 * 5 4 3 17 17 O 1.36011 * 120.08204 * 180.25572 * 16 5 4 18 18 C 1.42902 * 117.00343 * 180.02562 * 17 16 5 19 19 C 1.53000 * 109.47244 * 179.97438 * 18 17 16 20 20 H 1.09003 * 110.32971 * 307.24793 * 19 18 17 21 21 C 1.54481 * 110.36743 * 184.99752 * 19 18 17 22 22 C 1.54512 * 104.05709 * 217.18652 * 21 19 18 23 23 C 1.54473 * 104.06453 * 0.02562 * 22 21 19 24 24 O 1.44418 * 104.80512 * 23.97833 * 23 22 21 25 25 C 1.38280 * 119.90934 * 180.02562 * 2 1 3 26 26 H 1.08995 * 109.47588 * 269.98040 * 1 2 3 27 27 H 1.09000 * 109.46825 * 29.98167 * 1 2 3 28 28 H 1.08997 * 109.47385 * 149.97796 * 1 2 3 29 29 H 1.08005 * 119.91923 * 0.02562 * 3 2 1 30 30 H 1.08004 * 120.00973 * 180.29971 * 4 3 2 31 31 H 0.97000 * 120.00462 * 179.72937 * 6 5 4 32 32 H 1.09005 * 109.46943 * 60.00146 * 7 6 5 33 33 H 1.09002 * 109.47064 * 300.00409 * 7 6 5 34 34 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.46268 * 299.99934 * 18 17 16 36 36 H 1.08994 * 109.46954 * 59.98918 * 18 17 16 37 37 H 1.08991 * 110.51376 * 335.83056 * 21 19 18 38 38 H 1.09003 * 110.51101 * 98.41009 * 21 19 18 39 39 H 1.08998 * 110.50921 * 118.65234 * 22 21 19 40 40 H 1.09008 * 110.50927 * 241.21596 * 22 21 19 41 41 H 1.08999 * 110.37111 * 142.80914 * 23 22 21 42 42 H 1.08994 * 110.37310 * 265.14359 * 23 22 21 43 43 H 1.08001 * 119.99116 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1984 0.0000 4 6 3.5786 1.2043 0.0053 5 6 4.2770 0.0058 -0.0004 6 7 5.6767 0.0092 -0.0003 7 6 6.4061 1.2797 -0.0004 8 6 7.8884 1.0079 0.0003 9 1 8.2508 -0.0095 0.0003 10 6 8.7818 2.0581 0.0008 11 7 10.0754 1.8209 0.0009 12 14 8.1548 3.8177 0.0015 13 1 7.9889 4.2847 -1.3984 14 1 6.8464 3.8767 0.7013 15 1 9.1308 4.6906 0.7021 16 6 3.5815 -1.2013 -0.0003 17 8 4.2609 -2.3796 -0.0006 18 6 3.4821 -3.5777 -0.0011 19 6 4.4135 -4.7915 -0.0020 20 1 5.1346 -4.7149 -0.8158 21 6 3.5962 -6.0963 -0.1288 22 6 4.3451 -7.0979 0.7785 23 6 5.5258 -6.2797 1.3465 24 8 5.0933 -4.9040 1.2675 25 6 2.1965 -1.1986 -0.0005 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3634 -0.8897 -0.5141 29 1 1.6536 2.1321 0.0004 30 1 4.1147 2.1419 0.0102 31 1 6.1638 -0.8297 -0.0003 32 1 6.1414 1.8507 0.8896 33 1 6.1414 1.8506 -0.8904 34 1 10.7039 2.5598 0.0009 35 1 2.8531 -3.6024 0.8888 36 1 2.8533 -3.6019 -0.8911 37 1 2.5776 -5.9452 0.2285 38 1 3.5900 -6.4443 -1.1617 39 1 3.6967 -7.4420 1.5842 40 1 4.7090 -7.9436 0.1949 41 1 5.7169 -6.5584 2.3828 42 1 6.4191 -6.4319 0.7409 43 1 1.6548 -2.1330 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567702944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:47 Heat of formation + Delta-G solvation = -86.258834 kcal Electronic energy + Delta-G solvation = -22957.965702 eV Core-core repulsion = 19581.069278 eV Total energy + Delta-G solvation = -3376.896424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.26624 -40.29763 -38.43967 -36.96163 -34.76125 -33.19891 -32.46394 -31.85893 -30.63179 -29.57019 -27.03897 -26.10149 -24.47429 -23.23142 -22.51179 -22.16408 -21.44882 -19.56943 -18.51638 -17.81935 -17.51741 -17.06556 -16.78630 -16.76062 -16.07010 -15.87578 -15.35761 -15.03777 -14.96116 -14.71515 -14.65230 -14.35245 -14.26628 -14.22969 -13.19144 -13.10880 -12.91972 -12.78596 -12.69578 -12.66465 -12.41532 -12.25211 -12.15468 -11.88062 -11.82763 -11.70080 -11.59847 -11.49633 -10.96974 -10.79931 -10.61157 -9.39210 -8.39763 -7.89851 -6.47948 0.54304 0.74050 1.33299 1.35454 1.47258 2.22750 2.28706 2.84215 2.88362 2.93145 2.98104 3.59064 3.74600 3.93384 3.97209 4.08204 4.10882 4.18741 4.26679 4.41409 4.44402 4.47542 4.50303 4.63673 4.73088 4.79898 4.83375 4.84238 4.92130 4.98853 4.99667 5.07020 5.07082 5.15070 5.20800 5.28857 5.40122 5.49205 5.82114 5.86292 5.91216 6.05288 6.44536 6.50353 6.75788 7.04454 7.20333 8.76672 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.004550 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.893003 B = 6152.346908 C = 8431.910512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.190 4.190 5 C 0.169 3.831 6 N -0.735 5.735 7 C 0.243 3.757 8 C -0.552 4.552 9 H 0.036 0.964 10 C 0.017 3.983 11 N -0.940 5.940 12 Si 0.953 3.047 13 H -0.260 1.260 14 H -0.247 1.247 15 H -0.275 1.275 16 C 0.035 3.965 17 O -0.339 6.339 18 C 0.067 3.933 19 C 0.067 3.933 20 H 0.067 0.933 21 C -0.138 4.138 22 C -0.146 4.146 23 C 0.029 3.971 24 O -0.401 6.401 25 C -0.159 4.159 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.117 0.883 31 H 0.393 0.607 32 H 0.014 0.986 33 H 0.015 0.985 34 H 0.272 0.728 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.746 -13.774 -0.691 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.123 4.123 4 C -0.213 4.213 5 C 0.064 3.936 6 N -0.362 5.362 7 C 0.119 3.881 8 C -0.590 4.590 9 H 0.054 0.946 10 C -0.182 4.182 11 N -0.579 5.579 12 Si 0.774 3.226 13 H -0.185 1.185 14 H -0.170 1.170 15 H -0.200 1.200 16 C -0.013 4.013 17 O -0.254 6.254 18 C -0.008 4.008 19 C 0.010 3.990 20 H 0.085 0.915 21 C -0.175 4.175 22 C -0.184 4.184 23 C -0.047 4.047 24 O -0.321 6.321 25 C -0.178 4.178 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.161 0.839 30 H 0.135 0.865 31 H 0.226 0.774 32 H 0.032 0.968 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.229 -13.378 -0.531 25.098 hybrid contribution 1.044 0.212 -0.042 1.066 sum -20.185 -13.166 -0.574 24.106 Atomic orbital electron populations 1.20668 0.88614 1.03427 1.02680 1.19792 0.97515 0.91620 1.03702 1.20941 0.92108 0.98873 1.00330 1.20650 0.95420 0.95276 1.09990 1.17810 0.84050 0.92536 0.99193 1.44822 1.02104 1.08564 1.80752 1.19084 0.90125 0.83721 0.95121 1.21332 0.90690 0.94155 1.52814 0.94613 1.25837 0.94633 1.04491 0.93247 1.70036 1.02767 1.34177 1.50905 0.85641 0.79408 0.77828 0.79687 1.18504 1.17027 1.20029 1.18586 0.91456 0.84091 1.07167 1.86032 1.36623 1.12668 1.90041 1.23012 0.93650 0.81257 1.02896 1.23195 0.94143 0.94683 0.86999 0.91545 1.22910 1.00150 0.92009 1.02478 1.22930 0.96805 0.98591 1.00052 1.23654 0.97547 0.80705 1.02820 1.89244 1.75734 1.29580 1.37570 1.21058 0.90705 1.00050 1.06023 0.90858 0.90745 0.90776 0.83873 0.86486 0.77353 0.96826 0.96735 0.91886 0.91067 0.88588 0.88958 0.88037 0.89455 0.88423 0.88332 0.92266 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 10.01 71.23 0.71 -0.92 16 2 C -0.12 -3.20 5.88 -19.85 -0.12 -3.31 16 3 C -0.10 -3.02 9.69 22.27 0.22 -2.80 16 4 C -0.19 -7.01 9.31 22.38 0.21 -6.81 16 5 C 0.17 7.00 6.67 38.22 0.25 7.25 16 6 N -0.73 -35.25 5.72 -342.68 -1.96 -37.22 16 7 C 0.24 12.54 3.74 85.63 0.32 12.86 16 8 C -0.55 -33.37 9.83 25.60 0.25 -33.12 16 9 H 0.04 2.39 7.84 -2.91 -0.02 2.37 16 10 C 0.02 1.01 5.47 84.66 0.46 1.47 16 11 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 12 Si 0.95 44.38 27.47 68.60 1.88 46.26 16 13 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 14 H -0.25 -10.77 6.54 99.48 0.65 -10.11 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 16 C 0.04 1.27 6.70 22.59 0.15 1.42 16 17 O -0.34 -12.19 9.38 -93.64 -0.88 -13.06 16 18 C 0.07 1.65 4.35 71.98 0.31 1.96 16 19 C 0.07 1.59 3.57 31.10 0.11 1.70 16 20 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 21 C -0.14 -1.92 6.63 31.61 0.21 -1.71 16 22 C -0.15 -1.91 7.09 31.61 0.22 -1.68 16 23 C 0.03 0.58 7.63 72.48 0.55 1.14 16 24 O -0.40 -11.86 11.34 -148.94 -1.69 -13.55 16 25 C -0.16 -4.46 8.69 22.34 0.19 -4.27 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.07 8.08 -2.39 -0.02 1.06 16 28 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 29 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.12 4.42 6.74 -2.91 -0.02 4.40 16 31 H 0.39 19.70 7.68 -92.71 -0.71 18.99 16 32 H 0.01 0.72 7.00 -2.38 -0.02 0.70 16 33 H 0.01 0.75 7.39 -2.39 -0.02 0.73 16 34 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 35 H 0.07 1.65 7.66 -2.39 -0.02 1.63 16 36 H 0.10 1.82 7.66 -2.39 -0.02 1.80 16 37 H 0.09 1.03 7.87 -2.39 -0.02 1.02 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.15 3.13 6.30 -2.91 -0.02 3.12 16 Total: -1.00 -74.46 349.57 1.95 -72.51 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.23 Total: 30.95 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 4.07 Total: -26.80 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -1.66 Total: -96.30 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -2.57 Total: -26.61 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -74.46 1.95 -72.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567702944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.748 kcal (2) G-P(sol) polarization free energy of solvation -74.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds