Wall clock time and date at job start Tue Mar 31 2020 07:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38293 * 119.96722 * 2 1 4 4 C 1.38244 * 120.10856 * 179.70458 * 3 2 1 5 5 C 1.38173 * 120.05476 * 0.25876 * 4 3 2 6 6 C 1.50703 * 120.02487 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.46781 * 259.99449 * 6 5 4 8 8 C 1.46901 * 111.00039 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47563 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99233 * 0.02562 * 9 8 7 11 11 C 1.37868 * 120.00298 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00464 * 179.97438 * 11 9 8 13 13 Si 1.86809 * 119.99991 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47203 * 90.00024 * 13 11 9 15 15 H 1.48498 * 109.47219 * 210.00135 * 13 11 9 16 16 H 1.48502 * 109.46884 * 330.00048 * 13 11 9 17 17 C 1.38708 * 119.94228 * 0.02562 * 5 4 3 18 18 O 1.35903 * 120.04961 * 180.02562 * 17 5 4 19 19 C 1.42899 * 116.99533 * 185.33773 * 18 17 5 20 20 H 1.09001 * 110.75620 * 38.40636 * 19 18 17 21 21 C 1.55305 * 110.84992 * 162.10465 * 19 18 17 22 22 C 1.54943 * 100.94768 * 152.32207 * 21 19 18 23 23 O 1.43644 * 105.13511 * 323.55557 * 22 21 19 24 24 C 1.43241 * 109.97156 * 24.42835 * 23 22 21 25 25 C 1.38118 * 119.97461 * 180.26066 * 2 1 3 26 26 H 1.09001 * 109.47211 * 89.99738 * 1 2 3 27 27 H 1.09004 * 109.46397 * 209.99600 * 1 2 3 28 28 H 1.09000 * 109.47220 * 329.99228 * 1 2 3 29 29 H 1.07992 * 119.94516 * 359.97438 * 3 2 1 30 30 H 1.07992 * 119.97251 * 180.27732 * 4 3 2 31 31 H 1.08999 * 109.46963 * 19.99890 * 6 5 4 32 32 H 1.08998 * 109.46950 * 139.99870 * 6 5 4 33 33 H 1.00899 * 111.00412 * 303.95721 * 7 6 5 34 34 H 1.09002 * 109.47046 * 300.00381 * 8 7 6 35 35 H 1.09003 * 109.46923 * 59.99950 * 8 7 6 36 36 H 0.96992 * 120.00251 * 179.97438 * 12 11 9 37 37 H 1.09005 * 111.12293 * 270.24558 * 21 19 18 38 38 H 1.09001 * 111.12756 * 34.40012 * 21 19 18 39 39 H 1.08997 * 110.30898 * 204.63830 * 22 21 19 40 40 H 1.09003 * 110.39219 * 82.51468 * 22 21 19 41 41 H 1.09000 * 109.82958 * 238.77709 * 24 23 22 42 42 H 1.08994 * 109.90928 * 117.84663 * 24 23 22 43 43 H 1.07999 * 120.02834 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2015 0.0062 5 6 4.2752 0.0072 0.0069 6 6 5.7822 0.0117 0.0143 7 7 6.2791 -0.2245 -1.3478 8 6 7.7478 -0.2274 -1.3793 9 6 8.2196 -0.4714 -2.7895 10 1 7.5003 -0.6100 -3.5832 11 6 9.5694 -0.5178 -3.0666 12 7 9.9812 -0.7312 -4.2972 13 14 10.8135 -0.2788 -1.6937 14 1 11.1448 -1.5950 -1.0913 15 1 12.0468 0.3378 -2.2451 16 1 10.2378 0.6110 -0.6534 17 6 3.5846 -1.1957 0.0010 18 8 4.2660 -2.3716 0.0023 19 6 3.4949 -3.5682 -0.1225 20 1 2.6717 -3.4260 -0.8228 21 6 4.3915 -4.7614 -0.5517 22 6 3.6115 -5.9513 0.0619 23 8 3.0915 -5.4570 1.3063 24 6 2.9712 -4.0306 1.2542 25 6 2.1971 -1.1964 -0.0054 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.6564 2.1325 -0.0004 30 1 4.1174 2.1383 0.0107 31 1 6.1409 0.9778 0.3696 32 1 6.1447 -0.7758 0.6749 33 1 5.9080 -1.0839 -1.7242 34 1 8.1205 0.7368 -1.0335 35 1 8.1235 -1.0169 -0.7283 36 1 10.9308 -0.7634 -4.4922 37 1 4.4431 -4.8434 -1.6374 38 1 5.3883 -4.6796 -0.1181 39 1 4.2822 -6.7920 0.2394 40 1 2.7962 -6.2509 -0.5966 41 1 3.5682 -3.5800 2.0472 42 1 1.9265 -3.7417 1.3686 43 1 1.6572 -2.1317 -0.0093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569595438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:33 Heat of formation + Delta-G solvation = -59.992813 kcal Electronic energy + Delta-G solvation = -23303.307138 eV Core-core repulsion = 19927.549694 eV Total energy + Delta-G solvation = -3375.757444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.71611 -39.24077 -37.29990 -35.62833 -33.12341 -31.99309 -31.68191 -29.86368 -29.25529 -28.64129 -26.34024 -23.62524 -23.27090 -22.73146 -21.26480 -20.99618 -20.69136 -18.02416 -16.99697 -16.86279 -16.31405 -15.97930 -15.38871 -15.15357 -14.68679 -14.49285 -14.24901 -14.03620 -13.69933 -13.59662 -13.53615 -13.25169 -12.96622 -12.54767 -12.42187 -12.29869 -11.91102 -11.77564 -11.68343 -11.57491 -11.34039 -11.14854 -10.82611 -10.72307 -10.66285 -10.27657 -9.84815 -9.79521 -9.25802 -8.69790 -8.57446 -8.06367 -7.39462 -6.03684 -4.01186 1.35858 1.48079 2.95498 3.30147 3.37457 3.40831 3.63955 3.75350 4.08803 4.44169 4.52717 4.58139 4.68571 4.80274 4.83588 4.92054 4.99108 5.15964 5.26548 5.28907 5.30771 5.41295 5.44565 5.45325 5.50947 5.57459 5.63563 5.68723 5.69861 5.82648 5.91592 6.03142 6.24675 6.33486 6.54128 6.61556 6.67708 6.81430 6.87947 7.05846 7.41128 7.64121 7.93236 8.39419 8.68489 9.04539 9.58574 11.09717 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.004642 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.557620 B = 6030.531229 C = 7697.434197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.057 4.057 3 C -0.156 4.156 4 C -0.062 4.062 5 C -0.100 4.100 6 C 0.101 3.899 7 N -0.672 5.672 8 C 0.164 3.836 9 C -0.513 4.513 10 H 0.078 0.922 11 C 0.068 3.932 12 N -0.902 5.902 13 Si 0.878 3.122 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.267 1.267 17 C 0.133 3.867 18 O -0.292 6.292 19 C 0.054 3.946 20 H 0.090 0.910 21 C -0.151 4.151 22 C 0.052 3.948 23 O -0.379 6.379 24 C 0.030 3.970 25 C -0.211 4.211 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.337 0.663 34 H 0.026 0.974 35 H -0.021 1.021 36 H 0.263 0.737 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.947 -4.354 11.251 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C -0.175 4.175 4 C -0.081 4.081 5 C -0.101 4.101 6 C -0.028 4.028 7 N -0.302 5.302 8 C 0.036 3.964 9 C -0.551 4.551 10 H 0.096 0.904 11 C -0.133 4.133 12 N -0.541 5.541 13 Si 0.705 3.295 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.191 1.191 17 C 0.087 3.913 18 O -0.205 6.205 19 C -0.004 4.004 20 H 0.108 0.892 21 C -0.189 4.189 22 C -0.024 4.024 23 O -0.298 6.298 24 C -0.047 4.047 25 C -0.229 4.229 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.154 0.846 34 H 0.044 0.956 35 H -0.003 1.003 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.654 -3.874 11.148 22.073 hybrid contribution 0.823 -0.633 0.764 1.289 sum -17.831 -4.507 11.911 21.912 Atomic orbital electron populations 1.20783 0.91305 1.02550 1.02319 1.19613 0.95709 0.92552 0.97876 1.20906 0.94117 0.97312 1.05122 1.20905 0.93669 0.97110 0.96371 1.19351 0.96429 0.90104 1.04190 1.20725 0.88790 1.00796 0.92529 1.60605 1.10612 1.41863 1.17156 1.20019 0.83551 0.95242 0.97584 1.21053 0.92649 1.48580 0.92852 0.90378 1.24892 0.98253 0.94779 0.95372 1.69897 1.15207 1.50218 1.18751 0.86824 0.81141 0.78758 0.82780 1.20362 1.21172 1.19145 1.18837 0.90255 0.85457 0.96714 1.86206 1.34896 1.11724 1.87671 1.23943 0.95008 0.84557 0.96858 0.89199 1.23329 1.00582 0.91760 1.03183 1.23380 0.96961 0.96681 0.85374 1.88431 1.86080 1.19730 1.35585 1.23706 1.01269 0.81927 0.97815 1.21020 0.92634 0.98648 1.10621 0.91115 0.91830 0.91463 0.86095 0.85165 0.91017 0.95033 0.84570 0.95603 1.00291 0.92690 0.88401 0.88559 0.88871 0.91671 0.90013 0.90841 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.06 -0.66 5.88 -104.64 -0.62 -1.27 16 3 C -0.16 -1.87 9.70 -39.56 -0.38 -2.26 16 4 C -0.06 -0.86 9.67 -39.60 -0.38 -1.24 16 5 C -0.10 -1.58 5.41 -104.47 -0.56 -2.14 16 6 C 0.10 1.83 5.48 -4.98 -0.03 1.80 16 7 N -0.67 -14.68 6.48 -116.34 -0.75 -15.44 16 8 C 0.16 4.11 4.51 -4.97 -0.02 4.09 16 9 C -0.51 -15.00 9.87 -34.44 -0.34 -15.34 16 10 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 13 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 17 C 0.13 1.95 6.60 -39.22 -0.26 1.69 16 18 O -0.29 -4.29 9.07 -19.44 -0.18 -4.47 16 19 C 0.05 0.61 2.80 -24.78 -0.07 0.54 16 20 H 0.09 0.92 6.61 -51.93 -0.34 0.57 16 21 C -0.15 -1.60 6.89 -24.48 -0.17 -1.77 16 22 C 0.05 0.48 7.78 38.18 0.30 0.78 16 23 O -0.38 -4.45 11.36 -35.23 -0.40 -4.85 16 24 C 0.03 0.32 7.07 37.88 0.27 0.59 16 25 C -0.21 -2.60 8.43 -39.44 -0.33 -2.93 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 30 H 0.13 1.64 8.04 -52.49 -0.42 1.22 16 31 H 0.07 1.24 8.00 -51.93 -0.42 0.82 16 32 H 0.03 0.58 7.85 -51.93 -0.41 0.17 16 33 H 0.34 7.40 8.66 -39.29 -0.34 7.06 16 34 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 35 H -0.02 -0.51 7.57 -51.93 -0.39 -0.91 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 42 H 0.07 0.68 7.45 -51.93 -0.39 0.30 16 43 H 0.12 1.26 5.34 -52.49 -0.28 0.98 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -32.65 350.72 -9.02 -41.68 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.75 Total: 3.88 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -2.34 Total: -16.10 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.02 Total: -42.68 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.58 Total: -9.31 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.65 -9.02 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569595438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.317 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds