Wall clock time and date at job start Tue Mar 31 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38293 * 119.96722 * 2 1 4 4 C 1.38244 * 120.10856 * 179.70458 * 3 2 1 5 5 C 1.38173 * 120.05476 * 0.25876 * 4 3 2 6 6 C 1.50703 * 120.02487 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.46781 * 259.99449 * 6 5 4 8 8 C 1.46901 * 111.00039 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47563 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99233 * 0.02562 * 9 8 7 11 11 C 1.37868 * 120.00298 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00464 * 179.97438 * 11 9 8 13 13 Si 1.86809 * 119.99991 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47203 * 90.00024 * 13 11 9 15 15 H 1.48498 * 109.47219 * 210.00135 * 13 11 9 16 16 H 1.48502 * 109.46884 * 330.00048 * 13 11 9 17 17 C 1.38708 * 119.94228 * 0.02562 * 5 4 3 18 18 O 1.35903 * 120.04961 * 180.02562 * 17 5 4 19 19 C 1.42899 * 116.99533 * 185.33773 * 18 17 5 20 20 H 1.09001 * 110.75620 * 38.40636 * 19 18 17 21 21 C 1.55305 * 110.84992 * 162.10465 * 19 18 17 22 22 C 1.54943 * 100.94768 * 152.32207 * 21 19 18 23 23 O 1.43644 * 105.13511 * 323.55557 * 22 21 19 24 24 C 1.43241 * 109.97156 * 24.42835 * 23 22 21 25 25 C 1.38118 * 119.97461 * 180.26066 * 2 1 3 26 26 H 1.09001 * 109.47211 * 89.99738 * 1 2 3 27 27 H 1.09004 * 109.46397 * 209.99600 * 1 2 3 28 28 H 1.09000 * 109.47220 * 329.99228 * 1 2 3 29 29 H 1.07992 * 119.94516 * 359.97438 * 3 2 1 30 30 H 1.07992 * 119.97251 * 180.27732 * 4 3 2 31 31 H 1.08999 * 109.46963 * 19.99890 * 6 5 4 32 32 H 1.08998 * 109.46950 * 139.99870 * 6 5 4 33 33 H 1.00899 * 111.00412 * 303.95721 * 7 6 5 34 34 H 1.09002 * 109.47046 * 300.00381 * 8 7 6 35 35 H 1.09003 * 109.46923 * 59.99950 * 8 7 6 36 36 H 0.96992 * 120.00251 * 179.97438 * 12 11 9 37 37 H 1.09005 * 111.12293 * 270.24558 * 21 19 18 38 38 H 1.09001 * 111.12756 * 34.40012 * 21 19 18 39 39 H 1.08997 * 110.30898 * 204.63830 * 22 21 19 40 40 H 1.09003 * 110.39219 * 82.51468 * 22 21 19 41 41 H 1.09000 * 109.82958 * 238.77709 * 24 23 22 42 42 H 1.08994 * 109.90928 * 117.84663 * 24 23 22 43 43 H 1.07999 * 120.02834 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2015 0.0062 5 6 4.2752 0.0072 0.0069 6 6 5.7822 0.0117 0.0143 7 7 6.2791 -0.2245 -1.3478 8 6 7.7478 -0.2274 -1.3793 9 6 8.2196 -0.4714 -2.7895 10 1 7.5003 -0.6100 -3.5832 11 6 9.5694 -0.5178 -3.0666 12 7 9.9812 -0.7312 -4.2972 13 14 10.8135 -0.2788 -1.6937 14 1 11.1448 -1.5950 -1.0913 15 1 12.0468 0.3378 -2.2451 16 1 10.2378 0.6110 -0.6534 17 6 3.5846 -1.1957 0.0010 18 8 4.2660 -2.3716 0.0023 19 6 3.4949 -3.5682 -0.1225 20 1 2.6717 -3.4260 -0.8228 21 6 4.3915 -4.7614 -0.5517 22 6 3.6115 -5.9513 0.0619 23 8 3.0915 -5.4570 1.3063 24 6 2.9712 -4.0306 1.2542 25 6 2.1971 -1.1964 -0.0054 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.6564 2.1325 -0.0004 30 1 4.1174 2.1383 0.0107 31 1 6.1409 0.9778 0.3696 32 1 6.1447 -0.7758 0.6749 33 1 5.9080 -1.0839 -1.7242 34 1 8.1205 0.7368 -1.0335 35 1 8.1235 -1.0169 -0.7283 36 1 10.9308 -0.7634 -4.4922 37 1 4.4431 -4.8434 -1.6374 38 1 5.3883 -4.6796 -0.1181 39 1 4.2822 -6.7920 0.2394 40 1 2.7962 -6.2509 -0.5966 41 1 3.5682 -3.5800 2.0472 42 1 1.9265 -3.7417 1.3686 43 1 1.6572 -2.1317 -0.0093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569595438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:32 Heat of formation + Delta-G solvation = -82.250886 kcal Electronic energy + Delta-G solvation = -23304.272320 eV Core-core repulsion = 19927.549694 eV Total energy + Delta-G solvation = -3376.722627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68749 -40.15101 -38.26891 -37.24818 -34.86602 -33.55779 -32.61361 -30.85126 -30.21866 -30.01852 -27.82661 -24.87584 -24.33281 -23.56883 -23.05790 -22.12090 -21.73935 -19.14838 -18.83229 -17.85788 -17.29842 -17.23508 -16.54936 -16.12989 -16.10360 -15.97615 -15.50357 -15.26796 -15.14195 -14.54196 -14.42070 -14.38241 -14.26962 -14.05599 -13.62468 -13.38397 -13.21350 -12.84512 -12.80547 -12.66551 -12.53957 -12.52075 -12.17040 -12.01702 -11.83054 -11.66144 -11.60042 -11.45307 -10.83736 -10.65740 -9.70265 -9.25110 -8.99522 -8.31884 -6.36471 0.34613 0.48512 1.32963 1.34832 1.46569 2.02040 2.32470 2.73345 2.82973 3.01887 3.23551 3.64157 3.69866 3.72747 3.84363 3.87865 4.00421 4.07831 4.16882 4.21526 4.32340 4.49568 4.56418 4.61026 4.65174 4.72868 4.77042 4.78665 4.81825 4.84319 4.87027 4.96117 4.98674 5.03386 5.27585 5.34930 5.48575 5.57744 5.67286 5.81236 5.91120 5.92076 6.41441 6.53442 6.60738 6.71983 7.28362 8.84930 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.004642 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.557620 B = 6030.531229 C = 7697.434197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.159 4.159 4 C -0.070 4.070 5 C -0.133 4.133 6 C 0.108 3.892 7 N -0.678 5.678 8 C 0.175 3.825 9 C -0.527 4.527 10 H 0.035 0.965 11 C 0.011 3.989 12 N -0.946 5.946 13 Si 0.950 3.050 14 H -0.267 1.267 15 H -0.277 1.277 16 H -0.251 1.251 17 C 0.121 3.879 18 O -0.316 6.316 19 C 0.048 3.952 20 H 0.105 0.895 21 C -0.154 4.154 22 C 0.055 3.945 23 O -0.396 6.396 24 C 0.035 3.965 25 C -0.213 4.213 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.147 0.853 30 H 0.136 0.864 31 H 0.077 0.923 32 H 0.024 0.976 33 H 0.333 0.667 34 H 0.027 0.973 35 H -0.019 1.019 36 H 0.268 0.732 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.692 -4.197 12.798 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.177 4.177 4 C -0.089 4.089 5 C -0.134 4.134 6 C -0.021 4.021 7 N -0.308 5.308 8 C 0.047 3.953 9 C -0.565 4.565 10 H 0.054 0.946 11 C -0.187 4.187 12 N -0.586 5.586 13 Si 0.774 3.226 14 H -0.192 1.192 15 H -0.203 1.203 16 H -0.175 1.175 17 C 0.076 3.924 18 O -0.230 6.230 19 C -0.008 4.008 20 H 0.123 0.877 21 C -0.192 4.192 22 C -0.021 4.021 23 O -0.316 6.316 24 C -0.042 4.042 25 C -0.231 4.231 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.150 0.850 34 H 0.045 0.955 35 H -0.001 1.001 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.425 -3.717 12.705 24.339 hybrid contribution 1.241 -0.704 0.210 1.442 sum -19.184 -4.421 12.915 23.545 Atomic orbital electron populations 1.20864 0.88587 1.04048 1.03323 1.20088 0.97670 0.91933 0.95621 1.21232 0.93392 0.98827 1.04241 1.21081 0.94811 0.96660 0.96300 1.19265 0.94951 0.91634 1.07506 1.20668 0.90888 1.00551 0.89978 1.60532 1.08631 1.41594 1.20003 1.19769 0.85702 0.95033 0.94834 1.21280 0.92428 1.48900 0.93941 0.94641 1.25842 1.00507 0.94127 0.98183 1.70042 1.16073 1.51277 1.21236 0.85670 0.78122 0.79423 0.79434 1.19209 1.20261 1.17519 1.19004 0.91296 0.85101 0.97045 1.86172 1.36353 1.12611 1.87852 1.24152 0.95359 0.83632 0.97670 0.87701 1.23361 0.99784 0.92443 1.03579 1.23525 0.97671 0.96122 0.84786 1.88404 1.86287 1.20031 1.36906 1.23664 1.02047 0.81589 0.96873 1.21279 0.91693 1.00103 1.10043 0.90163 0.90495 0.89936 0.83484 0.84610 0.90504 0.95788 0.85032 0.95456 1.00111 0.92259 0.87772 0.90537 0.87762 0.89446 0.91469 0.88878 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.24 0.71 -0.70 16 2 C -0.05 -1.07 5.88 -19.88 -0.12 -1.18 16 3 C -0.16 -3.45 9.70 22.28 0.22 -3.23 16 4 C -0.07 -1.88 9.67 22.26 0.22 -1.66 16 5 C -0.13 -4.19 5.41 -19.77 -0.11 -4.30 16 6 C 0.11 3.96 5.48 85.56 0.47 4.43 16 7 N -0.68 -30.36 6.48 -521.98 -3.38 -33.74 16 8 C 0.18 8.89 4.51 85.56 0.39 9.28 16 9 C -0.53 -31.80 9.87 25.60 0.25 -31.55 16 10 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 11 C 0.01 0.66 5.47 84.65 0.46 1.13 16 12 N -0.95 -60.11 13.96 21.44 0.30 -59.81 16 13 Si 0.95 45.20 27.47 68.60 1.88 47.08 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 17 C 0.12 3.50 6.60 22.50 0.15 3.65 16 18 O -0.32 -9.42 9.07 -92.46 -0.84 -10.26 16 19 C 0.05 1.08 2.80 31.86 0.09 1.17 16 20 H 0.11 1.98 6.61 -2.39 -0.02 1.96 16 21 C -0.15 -3.24 6.89 32.05 0.22 -3.02 16 22 C 0.05 0.93 7.78 72.65 0.56 1.50 16 23 O -0.40 -8.81 11.36 -148.98 -1.69 -10.50 16 24 C 0.04 0.73 7.07 72.45 0.51 1.24 16 25 C -0.21 -4.84 8.43 22.36 0.19 -4.65 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 0.80 8.09 -2.38 -0.02 0.78 16 28 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.14 3.34 8.04 -2.91 -0.02 3.31 16 31 H 0.08 2.67 8.00 -2.39 -0.02 2.65 16 32 H 0.02 0.91 7.85 -2.39 -0.02 0.89 16 33 H 0.33 15.23 8.66 -89.69 -0.78 14.45 16 34 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 35 H -0.02 -0.94 7.57 -2.39 -0.02 -0.96 16 36 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 37 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.57 8.05 -2.39 -0.02 1.55 16 42 H 0.09 1.53 7.45 -2.39 -0.02 1.51 16 43 H 0.14 2.56 5.34 -2.91 -0.02 2.54 16 Total: -1.00 -71.98 350.72 0.66 -71.32 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.17 Total: 23.82 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 4.22 Total: -27.91 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -3.08 Total: -93.55 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -2.53 Total: -20.76 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -71.98 0.66 -71.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569595438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.932 kcal (2) G-P(sol) polarization free energy of solvation -71.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds