Wall clock time and date at job start Tue Mar 31 2020 07:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38285 * 119.97874 * 2 1 4 4 C 1.38244 * 120.11586 * 180.02562 * 3 2 1 5 5 C 1.38160 * 120.05387 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.02642 * 179.97438 * 5 4 3 7 7 N 1.46909 * 109.47032 * 259.99840 * 6 5 4 8 8 C 1.46902 * 110.99852 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.46829 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00121 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00292 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99542 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00542 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47299 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47366 * 119.99777 * 13 11 9 16 16 H 1.48509 * 109.47056 * 239.99827 * 13 11 9 17 17 C 1.38713 * 119.94391 * 359.97438 * 5 4 3 18 18 O 1.35906 * 120.05540 * 180.02562 * 17 5 4 19 19 C 1.42894 * 117.00203 * 174.22463 * 18 17 5 20 20 H 1.09002 * 110.45757 * 326.41188 * 19 18 17 21 21 C 1.54509 * 110.51335 * 203.80487 * 19 18 17 22 22 C 1.54475 * 104.06053 * 241.35449 * 21 19 18 23 23 O 1.44424 * 104.80654 * 23.97969 * 22 21 19 24 24 C 1.44423 * 105.27575 * 319.48723 * 23 22 21 25 25 C 1.38132 * 119.96876 * 179.73298 * 2 1 3 26 26 H 1.09001 * 109.47374 * 89.99272 * 1 2 3 27 27 H 1.09000 * 109.47498 * 209.99755 * 1 2 3 28 28 H 1.09009 * 109.46720 * 329.99798 * 1 2 3 29 29 H 1.08005 * 119.94253 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.96909 * 179.97438 * 4 3 2 31 31 H 1.08995 * 109.47393 * 19.99785 * 6 5 4 32 32 H 1.09002 * 109.47021 * 140.00163 * 6 5 4 33 33 H 1.00901 * 111.00017 * 303.95509 * 7 6 5 34 34 H 1.08998 * 109.47162 * 300.00176 * 8 7 6 35 35 H 1.09002 * 109.46775 * 60.00036 * 8 7 6 36 36 H 0.97000 * 119.99944 * 180.02562 * 12 11 9 37 37 H 1.08997 * 110.50970 * 0.02562 * 21 19 18 38 38 H 1.09003 * 110.50828 * 122.71538 * 21 19 18 39 39 H 1.09000 * 110.36909 * 142.81185 * 22 21 19 40 40 H 1.09001 * 110.37436 * 265.03379 * 22 21 19 41 41 H 1.09001 * 110.36647 * 281.68357 * 24 23 22 42 42 H 1.08993 * 110.37412 * 159.34426 * 24 23 22 43 43 H 1.08001 * 120.02502 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1978 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.2752 0.0070 -0.0016 6 6 5.7822 0.0113 -0.0028 7 7 6.2715 -0.2273 -1.3673 8 6 7.7399 -0.2292 -1.4071 9 6 8.2037 -0.4756 -2.8196 10 1 7.4800 -0.6163 -3.6088 11 6 9.5520 -0.5216 -3.1044 12 7 10.4333 -0.3498 -2.1434 13 14 10.1270 -0.8263 -4.8553 14 1 8.9472 -0.9857 -5.7431 15 1 10.9419 0.3263 -5.3165 16 1 10.9489 -2.0625 -4.8984 17 6 3.5844 -1.1960 -0.0016 18 8 4.2656 -2.3720 -0.0021 19 6 3.4947 -3.5683 0.1260 20 1 2.6261 -3.3956 0.7615 21 6 4.3624 -4.7133 0.6946 22 6 4.3477 -5.7838 -0.4189 23 8 4.0643 -5.0516 -1.6311 24 6 3.0584 -4.0825 -1.2639 25 6 2.1970 -1.1966 0.0056 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8901 0.5139 29 1 1.6566 2.1324 -0.0004 30 1 4.1176 2.1380 -0.0010 31 1 6.1430 0.9778 0.3488 32 1 6.1483 -0.7752 0.6572 33 1 5.8981 -1.0873 -1.7401 34 1 8.1140 0.7359 -1.0654 35 1 8.1199 -1.0171 -0.7568 36 1 11.3818 -0.3818 -2.3438 37 1 5.3794 -4.3667 0.8784 38 1 3.9215 -5.1083 1.6099 39 1 5.3199 -6.2718 -0.4889 40 1 3.5673 -6.5202 -0.2271 41 1 2.0790 -4.5570 -1.2026 42 1 3.0401 -3.2636 -1.9829 43 1 1.6569 -2.1319 0.0104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569595440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:36 Heat of formation + Delta-G solvation = -62.500149 kcal Electronic energy + Delta-G solvation = -23406.016082 eV Core-core repulsion = 20030.149912 eV Total energy + Delta-G solvation = -3375.866170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63107 -39.10177 -37.09756 -35.41463 -33.07497 -31.86324 -31.56957 -29.77659 -29.06192 -28.26454 -25.96533 -23.71304 -23.26518 -22.67803 -21.32288 -20.94468 -20.56869 -17.84481 -16.73408 -16.52628 -16.24938 -15.85316 -15.35706 -15.02209 -14.76014 -14.49618 -14.13270 -14.05911 -13.63732 -13.42889 -13.17430 -13.00191 -12.78955 -12.29413 -12.23010 -12.14284 -11.73203 -11.67392 -11.46023 -11.37173 -11.10060 -11.06152 -10.83358 -10.65357 -10.61704 -10.40798 -9.87619 -9.84434 -9.09133 -8.61807 -8.39971 -7.95100 -7.14435 -5.95148 -3.95987 1.43582 1.56400 3.15329 3.37085 3.43693 3.50277 3.74917 3.85138 4.26289 4.51496 4.59307 4.68316 4.75008 4.87550 4.89419 5.03553 5.07011 5.19699 5.26607 5.39179 5.40948 5.43516 5.47575 5.54855 5.61317 5.62546 5.70356 5.75981 5.79689 5.87514 6.05911 6.13011 6.40295 6.42741 6.56695 6.63731 6.79522 6.96705 7.34620 7.52097 7.55136 7.88272 8.21797 8.52179 8.72716 9.13773 9.68409 11.16180 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012048 B = 0.004768 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.516637 B = 5870.569052 C = 7431.705500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.059 4.059 3 C -0.158 4.158 4 C -0.063 4.063 5 C -0.098 4.098 6 C 0.104 3.896 7 N -0.682 5.682 8 C 0.194 3.806 9 C -0.508 4.508 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.900 5.900 13 Si 0.898 3.102 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.134 3.866 18 O -0.291 6.291 19 C 0.052 3.948 20 H 0.087 0.913 21 C -0.153 4.153 22 C 0.045 3.955 23 O -0.362 6.362 24 C 0.025 3.975 25 C -0.214 4.214 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.332 0.668 34 H 0.027 0.973 35 H -0.014 1.014 36 H 0.260 0.740 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.515 -5.841 8.678 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.059 4.059 3 C -0.176 4.176 4 C -0.081 4.081 5 C -0.099 4.099 6 C -0.026 4.026 7 N -0.313 5.313 8 C 0.068 3.932 9 C -0.547 4.547 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.540 5.540 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.211 1.211 17 C 0.088 3.912 18 O -0.204 6.204 19 C -0.005 4.005 20 H 0.105 0.895 21 C -0.190 4.190 22 C -0.032 4.032 23 O -0.280 6.280 24 C -0.052 4.052 25 C -0.232 4.232 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.138 0.862 30 H 0.148 0.852 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.149 0.851 34 H 0.045 0.955 35 H 0.004 0.996 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.042 -5.248 8.293 22.316 hybrid contribution 0.345 -1.023 -0.237 1.105 sum -19.697 -6.271 8.056 22.185 Atomic orbital electron populations 1.20769 0.91413 1.02418 1.02245 1.19587 0.95603 0.92591 0.98168 1.20887 0.94132 0.97245 1.05385 1.20907 0.93625 0.97176 0.96432 1.19443 0.96730 0.90066 1.03708 1.20676 0.88375 1.00672 0.92838 1.60777 1.12253 1.41370 1.16890 1.19554 0.80779 0.96052 0.96844 1.21231 0.91550 1.47932 0.93992 0.91974 1.24977 0.96709 0.95531 0.97378 1.69982 1.01318 1.50782 1.31880 0.86442 0.78657 0.77628 0.84705 1.19640 1.21048 1.21127 1.18872 0.90210 0.85663 0.96441 1.86283 1.35048 1.11671 1.87442 1.23818 0.94886 0.84699 0.97137 0.89517 1.23082 1.02794 0.94071 0.99102 1.23438 1.01948 0.93977 0.83841 1.89240 1.58503 1.49559 1.30689 1.23986 0.91811 0.93111 0.96333 1.20971 0.92685 0.98529 1.11038 0.91178 0.91941 0.91551 0.86216 0.85227 0.91183 0.95216 0.85083 0.95517 0.99620 0.93083 0.88536 0.89301 0.88436 0.92154 0.91299 0.87968 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.00 0.36 -0.58 16 2 C -0.06 -0.70 5.88 -104.64 -0.62 -1.32 16 3 C -0.16 -1.98 9.70 -39.56 -0.38 -2.36 16 4 C -0.06 -0.92 9.66 -39.61 -0.38 -1.30 16 5 C -0.10 -1.65 5.41 -104.48 -0.56 -2.21 16 6 C 0.10 2.04 5.48 -4.97 -0.03 2.01 16 7 N -0.68 -16.00 6.48 -116.33 -0.75 -16.75 16 8 C 0.19 5.39 5.44 -4.98 -0.03 5.37 16 9 C -0.51 -15.15 9.32 -34.44 -0.32 -15.47 16 10 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 11 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 13 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 14 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 C 0.13 2.06 6.63 -39.22 -0.26 1.80 16 18 O -0.29 -4.58 8.96 -19.44 -0.17 -4.75 16 19 C 0.05 0.60 2.94 -25.16 -0.07 0.53 16 20 H 0.09 0.81 6.28 -51.93 -0.33 0.49 16 21 C -0.15 -1.58 6.90 -25.16 -0.17 -1.76 16 22 C 0.04 0.47 7.63 37.93 0.29 0.76 16 23 O -0.36 -5.18 11.65 -35.23 -0.41 -5.59 16 24 C 0.02 0.29 6.96 37.94 0.26 0.56 16 25 C -0.21 -2.71 8.52 -39.43 -0.34 -3.04 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.07 0.48 8.09 -51.92 -0.42 0.06 16 29 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 30 H 0.13 1.75 8.04 -52.49 -0.42 1.33 16 31 H 0.07 1.33 8.00 -51.93 -0.42 0.92 16 32 H 0.03 0.60 7.85 -51.93 -0.41 0.20 16 33 H 0.33 7.87 8.67 -39.29 -0.34 7.53 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H -0.01 -0.41 8.14 -51.93 -0.42 -0.84 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.10 1.18 8.00 -51.93 -0.42 0.76 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 1.34 8.09 -51.93 -0.42 0.92 16 43 H 0.12 1.25 5.86 -52.49 -0.31 0.94 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -33.60 355.29 -9.44 -43.04 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.82 Total: 3.66 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.35 Total: -15.49 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -0.02 Total: -43.75 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.58 Total: -10.34 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.60 -9.44 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569595440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.459 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds