Wall clock time and date at job start Tue Mar 31 2020 07:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38285 * 119.97874 * 2 1 4 4 C 1.38244 * 120.11586 * 180.02562 * 3 2 1 5 5 C 1.38160 * 120.05387 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.02642 * 179.97438 * 5 4 3 7 7 N 1.46909 * 109.47032 * 259.99840 * 6 5 4 8 8 C 1.46902 * 110.99852 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.46829 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00121 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00292 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99542 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00542 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47299 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47366 * 119.99777 * 13 11 9 16 16 H 1.48509 * 109.47056 * 239.99827 * 13 11 9 17 17 C 1.38713 * 119.94391 * 359.97438 * 5 4 3 18 18 O 1.35906 * 120.05540 * 180.02562 * 17 5 4 19 19 C 1.42894 * 117.00203 * 174.22463 * 18 17 5 20 20 H 1.09002 * 110.45757 * 326.41188 * 19 18 17 21 21 C 1.54509 * 110.51335 * 203.80487 * 19 18 17 22 22 C 1.54475 * 104.06053 * 241.35449 * 21 19 18 23 23 O 1.44424 * 104.80654 * 23.97969 * 22 21 19 24 24 C 1.44423 * 105.27575 * 319.48723 * 23 22 21 25 25 C 1.38132 * 119.96876 * 179.73298 * 2 1 3 26 26 H 1.09001 * 109.47374 * 89.99272 * 1 2 3 27 27 H 1.09000 * 109.47498 * 209.99755 * 1 2 3 28 28 H 1.09009 * 109.46720 * 329.99798 * 1 2 3 29 29 H 1.08005 * 119.94253 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.96909 * 179.97438 * 4 3 2 31 31 H 1.08995 * 109.47393 * 19.99785 * 6 5 4 32 32 H 1.09002 * 109.47021 * 140.00163 * 6 5 4 33 33 H 1.00901 * 111.00017 * 303.95509 * 7 6 5 34 34 H 1.08998 * 109.47162 * 300.00176 * 8 7 6 35 35 H 1.09002 * 109.46775 * 60.00036 * 8 7 6 36 36 H 0.97000 * 119.99944 * 180.02562 * 12 11 9 37 37 H 1.08997 * 110.50970 * 0.02562 * 21 19 18 38 38 H 1.09003 * 110.50828 * 122.71538 * 21 19 18 39 39 H 1.09000 * 110.36909 * 142.81185 * 22 21 19 40 40 H 1.09001 * 110.37436 * 265.03379 * 22 21 19 41 41 H 1.09001 * 110.36647 * 281.68357 * 24 23 22 42 42 H 1.08993 * 110.37412 * 159.34426 * 24 23 22 43 43 H 1.08001 * 120.02502 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1978 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.2752 0.0070 -0.0016 6 6 5.7822 0.0113 -0.0028 7 7 6.2715 -0.2273 -1.3673 8 6 7.7399 -0.2292 -1.4071 9 6 8.2037 -0.4756 -2.8196 10 1 7.4800 -0.6163 -3.6088 11 6 9.5520 -0.5216 -3.1044 12 7 10.4333 -0.3498 -2.1434 13 14 10.1270 -0.8263 -4.8553 14 1 8.9472 -0.9857 -5.7431 15 1 10.9419 0.3263 -5.3165 16 1 10.9489 -2.0625 -4.8984 17 6 3.5844 -1.1960 -0.0016 18 8 4.2656 -2.3720 -0.0021 19 6 3.4947 -3.5683 0.1260 20 1 2.6261 -3.3956 0.7615 21 6 4.3624 -4.7133 0.6946 22 6 4.3477 -5.7838 -0.4189 23 8 4.0643 -5.0516 -1.6311 24 6 3.0584 -4.0825 -1.2639 25 6 2.1970 -1.1966 0.0056 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8901 0.5139 29 1 1.6566 2.1324 -0.0004 30 1 4.1176 2.1380 -0.0010 31 1 6.1430 0.9778 0.3488 32 1 6.1483 -0.7752 0.6572 33 1 5.8981 -1.0873 -1.7401 34 1 8.1140 0.7359 -1.0654 35 1 8.1199 -1.0171 -0.7568 36 1 11.3818 -0.3818 -2.3438 37 1 5.3794 -4.3667 0.8784 38 1 3.9215 -5.1083 1.6099 39 1 5.3199 -6.2718 -0.4889 40 1 3.5673 -6.5202 -0.2271 41 1 2.0790 -4.5570 -1.2026 42 1 3.0401 -3.2636 -1.9829 43 1 1.6569 -2.1319 0.0104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569595440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:35 Heat of formation + Delta-G solvation = -85.521164 kcal Electronic energy + Delta-G solvation = -23407.014348 eV Core-core repulsion = 20030.149912 eV Total energy + Delta-G solvation = -3376.864437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65385 -40.08314 -38.12990 -37.18958 -34.90639 -33.42181 -32.55495 -30.81002 -29.98546 -29.74250 -27.65233 -25.01390 -24.48797 -23.59494 -23.33953 -21.97670 -21.64457 -18.93688 -18.55733 -17.64323 -17.29463 -17.13230 -16.69851 -16.40617 -16.03535 -15.86319 -15.64284 -15.13229 -14.99147 -14.64819 -14.34476 -14.31119 -13.87506 -13.71747 -13.45092 -13.14285 -13.09583 -12.82448 -12.80431 -12.63893 -12.53400 -12.50746 -12.21872 -12.17497 -11.99415 -11.74119 -11.51892 -11.27943 -10.76698 -10.69338 -9.68070 -9.21448 -8.97178 -8.24772 -6.36411 0.36467 0.51296 1.38233 1.39535 1.54036 2.18756 2.38412 2.75086 2.92783 3.07748 3.40080 3.69759 3.73323 3.82468 3.87367 3.95913 4.07312 4.12796 4.22074 4.26720 4.31539 4.48893 4.57270 4.63456 4.66678 4.73609 4.78177 4.80836 4.86279 4.89806 4.97625 5.01323 5.03314 5.21073 5.29584 5.37891 5.56794 5.59491 5.68992 5.74587 5.95448 5.98464 6.38474 6.53457 6.64901 6.83357 7.34157 8.87260 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012048 B = 0.004768 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.516637 B = 5870.569052 C = 7431.705500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.051 4.051 3 C -0.160 4.160 4 C -0.071 4.071 5 C -0.135 4.135 6 C 0.112 3.888 7 N -0.678 5.678 8 C 0.210 3.790 9 C -0.536 4.536 10 H 0.059 0.941 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.275 1.275 17 C 0.123 3.877 18 O -0.324 6.324 19 C 0.044 3.956 20 H 0.117 0.883 21 C -0.151 4.151 22 C 0.041 3.959 23 O -0.403 6.403 24 C 0.024 3.976 25 C -0.212 4.212 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.131 0.869 31 H 0.067 0.933 32 H 0.014 0.986 33 H 0.330 0.670 34 H 0.003 0.997 35 H -0.045 1.045 36 H 0.266 0.734 37 H 0.066 0.934 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.511 -6.515 8.292 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.052 4.052 3 C -0.178 4.178 4 C -0.090 4.090 5 C -0.136 4.136 6 C -0.017 4.017 7 N -0.307 5.307 8 C 0.083 3.917 9 C -0.574 4.574 10 H 0.077 0.923 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.799 3.201 14 H -0.190 1.190 15 H -0.198 1.198 16 H -0.201 1.201 17 C 0.078 3.922 18 O -0.238 6.238 19 C -0.012 4.012 20 H 0.135 0.865 21 C -0.189 4.189 22 C -0.035 4.035 23 O -0.322 6.322 24 C -0.052 4.052 25 C -0.230 4.230 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.165 0.835 30 H 0.149 0.851 31 H 0.086 0.914 32 H 0.032 0.968 33 H 0.146 0.854 34 H 0.021 0.979 35 H -0.027 1.027 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.143 0.857 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -23.060 -5.919 7.926 25.092 hybrid contribution 1.206 -0.821 -0.044 1.460 sum -21.854 -6.740 7.882 24.190 Atomic orbital electron populations 1.20858 0.88349 1.04110 1.03362 1.20101 0.97748 0.91835 0.95494 1.21212 0.93130 0.98982 1.04480 1.21041 0.94960 0.96458 0.96542 1.19263 0.94546 0.92015 1.07777 1.20580 0.91259 0.99698 0.90209 1.60693 1.09439 1.40920 1.19689 1.19206 0.83397 0.93477 0.95661 1.21516 0.92267 1.49038 0.94556 0.92271 1.25964 0.96582 0.94618 1.02391 1.70103 1.01923 1.50926 1.34413 0.85255 0.78268 0.78023 0.78568 1.18957 1.19817 1.20059 1.19025 0.91430 0.85119 0.96674 1.86253 1.37046 1.12891 1.87627 1.24154 0.95769 0.83510 0.97781 0.86536 1.23143 1.01308 0.93792 1.00623 1.23651 1.03048 0.94256 0.82552 1.89185 1.59635 1.50552 1.32841 1.24104 0.92968 0.92522 0.95638 1.21265 0.91413 1.00263 1.10070 0.90131 0.90220 0.90040 0.83477 0.85081 0.91443 0.96782 0.85376 0.97883 1.02691 0.92493 0.91500 0.85723 0.88904 0.88721 0.87515 0.90134 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 71.24 0.71 -0.65 16 2 C -0.05 -1.06 5.88 -19.88 -0.12 -1.18 16 3 C -0.16 -3.67 9.70 22.28 0.22 -3.45 16 4 C -0.07 -2.09 9.66 22.25 0.22 -1.88 16 5 C -0.13 -4.69 5.41 -19.77 -0.11 -4.79 16 6 C 0.11 4.70 5.48 85.56 0.47 5.17 16 7 N -0.68 -33.79 6.48 -521.97 -3.38 -37.17 16 8 C 0.21 12.43 5.44 85.55 0.47 12.90 16 9 C -0.54 -33.09 9.32 25.60 0.24 -32.85 16 10 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 11 C 0.00 0.16 5.46 84.65 0.46 0.62 16 12 N -0.93 -58.98 13.29 21.45 0.28 -58.70 16 13 Si 0.98 46.73 29.54 68.60 2.03 48.75 16 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 C 0.12 3.80 6.63 22.51 0.15 3.95 16 18 O -0.32 -10.50 8.96 -92.49 -0.83 -11.33 16 19 C 0.04 0.98 2.94 31.61 0.09 1.07 16 20 H 0.12 1.83 6.28 -2.39 -0.01 1.81 16 21 C -0.15 -3.01 6.90 31.61 0.22 -2.79 16 22 C 0.04 0.82 7.63 72.48 0.55 1.37 16 23 O -0.40 -11.48 11.65 -148.98 -1.74 -13.22 16 24 C 0.02 0.55 6.96 72.49 0.50 1.05 16 25 C -0.21 -4.89 8.52 22.37 0.19 -4.70 16 26 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 28 H 0.08 0.80 8.09 -2.38 -0.02 0.79 16 29 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 30 H 0.13 3.62 8.04 -2.91 -0.02 3.60 16 31 H 0.07 2.79 8.00 -2.39 -0.02 2.77 16 32 H 0.01 0.63 7.85 -2.39 -0.02 0.61 16 33 H 0.33 16.64 8.67 -89.69 -0.78 15.87 16 34 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 35 H -0.04 -2.84 8.14 -2.39 -0.02 -2.86 16 36 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 37 H 0.07 1.72 8.00 -2.39 -0.02 1.71 16 38 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 43 H 0.15 2.51 5.86 -2.91 -0.02 2.50 16 Total: -1.00 -76.48 355.29 0.85 -75.63 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.22 Total: 22.19 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 4.26 Total: -26.16 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -3.10 Total: -95.87 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -2.56 Total: -24.54 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -76.48 0.85 -75.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569595440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.891 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds