Wall clock time and date at job start Tue Mar 31 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38281 * 119.94546 * 2 1 4 4 C 1.38130 * 120.05783 * 179.97438 * 3 2 1 5 5 C 1.38757 * 119.94053 * 0.02562 * 4 3 2 6 6 O 1.35896 * 120.05265 * 180.02562 * 5 4 3 7 7 C 1.42905 * 117.00039 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.46728 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.47177 * 65.00458 * 8 7 6 10 10 C 1.34778 * 120.00010 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00275 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99954 * 179.97438 * 10 9 8 13 13 C 1.52993 * 109.46912 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.47087 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99563 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00282 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99971 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99603 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46583 * 90.00905 * 18 16 14 20 20 H 1.48500 * 109.46674 * 210.00373 * 18 16 14 21 21 H 1.48497 * 109.47394 * 330.00502 * 18 16 14 22 22 C 1.38709 * 119.88984 * 0.27738 * 5 4 3 23 23 C 1.50701 * 120.02948 * 179.72382 * 22 5 4 24 24 C 1.38166 * 119.94128 * 359.44794 * 22 5 4 25 25 H 1.08995 * 109.46770 * 90.00180 * 1 2 3 26 26 H 1.08999 * 109.47261 * 209.99882 * 1 2 3 27 27 H 1.09001 * 109.47108 * 330.00183 * 1 2 3 28 28 H 1.07996 * 119.97422 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.02883 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47187 * 300.00222 * 7 6 5 31 31 H 1.09001 * 109.46558 * 60.00270 * 7 6 5 32 32 H 1.09000 * 109.46738 * 185.00163 * 8 7 6 33 33 H 1.08994 * 109.47465 * 305.00250 * 8 7 6 34 34 H 0.97003 * 120.00376 * 359.97438 * 9 8 7 35 35 H 1.08990 * 109.46967 * 300.00350 * 12 10 9 36 36 H 1.09003 * 109.46447 * 60.00072 * 12 10 9 37 37 H 1.09000 * 109.47744 * 300.00015 * 13 12 10 38 38 H 1.08999 * 109.47626 * 60.00379 * 13 12 10 39 39 H 0.97005 * 119.99545 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.46852 * 89.99583 * 23 22 5 41 41 H 1.08994 * 109.46996 * 210.00468 * 23 22 5 42 42 H 1.08996 * 109.46797 * 330.00359 * 23 22 5 43 43 H 1.07999 * 119.97225 * 180.27358 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2735 -0.0001 0.0005 6 8 5.6324 -0.0001 0.0016 7 6 6.2812 1.2732 0.0021 8 6 7.7980 1.0726 0.0039 9 7 8.2071 0.4298 -1.2473 10 6 9.5074 0.1533 -1.4692 11 8 10.3390 0.4371 -0.6332 12 6 9.9282 -0.5085 -2.7561 13 6 11.4451 -0.7078 -2.7548 14 6 11.8659 -1.3691 -4.0420 15 1 11.1254 -1.6223 -4.7862 16 6 13.1962 -1.6518 -4.2690 17 7 13.5633 -2.2293 -5.3921 18 14 14.4769 -1.2145 -2.9813 19 1 14.6501 -2.3564 -2.0479 20 1 15.7702 -0.9206 -3.6494 21 1 14.0285 -0.0190 -2.2232 22 6 3.5788 -1.2007 -0.0058 23 6 4.3303 -2.5069 -0.0121 24 6 2.1971 -1.1979 -0.0006 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6560 2.1327 -0.0004 29 1 4.1172 2.1370 0.0001 30 1 5.9890 1.8302 -0.8881 31 1 5.9876 1.8301 0.8919 32 1 8.2922 2.0399 0.0939 33 1 8.0800 0.4408 0.8461 34 1 7.5421 0.2030 -1.9162 35 1 9.4343 -1.4760 -2.8455 36 1 9.6457 0.1228 -3.5985 37 1 11.9387 0.2599 -2.6657 38 1 11.7280 -1.3389 -1.9124 39 1 14.4993 -2.4279 -5.5519 40 1 4.5111 -2.8269 1.0140 41 1 3.7403 -3.2630 -0.5301 42 1 5.2831 -2.3753 -0.5249 43 1 1.6557 -2.1324 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571849911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:51 Heat of formation + Delta-G solvation = -74.276094 kcal Electronic energy + Delta-G solvation = -22075.078898 eV Core-core repulsion = 18698.702084 eV Total energy + Delta-G solvation = -3376.376814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.62507 -39.26819 -38.05183 -34.82082 -33.45593 -33.41454 -31.89166 -31.36199 -29.79236 -27.49844 -26.47107 -25.98945 -23.78387 -21.79270 -21.12830 -20.96338 -19.70089 -18.42796 -17.26780 -16.62556 -16.45234 -15.80175 -15.47780 -15.20609 -15.08969 -14.67720 -14.16321 -14.06240 -13.74121 -13.50417 -13.45885 -13.27531 -13.06110 -12.76045 -12.55018 -12.24589 -12.23458 -12.14217 -11.85007 -11.57988 -11.39396 -11.10143 -11.02586 -10.93547 -10.14318 -10.02617 -9.76833 -9.24106 -9.14869 -9.11429 -8.90324 -8.48846 -8.25471 -6.01177 -3.99726 1.02042 1.11626 2.84983 3.14316 3.39333 3.39684 3.44633 3.46303 3.56877 4.37030 4.47404 4.52646 4.54862 4.61526 4.73154 4.86358 4.95095 4.98067 5.11424 5.26591 5.31080 5.34289 5.36710 5.39075 5.50172 5.52050 5.61133 5.63332 5.74302 5.98318 6.03988 6.10798 6.13028 6.16862 6.30159 6.50883 6.58440 6.72251 7.12631 7.38799 7.45820 7.76032 7.81820 8.52000 8.66259 9.02091 9.61921 11.11647 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030228 B = 0.002474 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.075399 B =11317.041267 C =11767.063579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.124 4.124 3 C -0.088 4.088 4 C -0.202 4.202 5 C 0.125 3.875 6 O -0.306 6.306 7 C 0.048 3.952 8 C 0.123 3.877 9 N -0.739 5.739 10 C 0.511 3.489 11 O -0.542 6.542 12 C -0.122 4.122 13 C 0.001 3.999 14 C -0.524 4.524 15 H 0.073 0.927 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.261 1.261 22 C -0.110 4.110 23 C -0.108 4.108 24 C -0.085 4.085 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.401 0.599 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.023 0.977 38 H 0.019 0.981 39 H 0.263 0.737 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.714 6.597 12.498 31.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.221 4.221 5 C 0.080 3.920 6 O -0.220 6.220 7 C -0.027 4.027 8 C -0.001 4.001 9 N -0.394 5.394 10 C 0.299 3.701 11 O -0.418 6.418 12 C -0.162 4.162 13 C -0.037 4.037 14 C -0.562 4.562 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.111 4.111 23 C -0.164 4.164 24 C -0.103 4.103 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.236 0.764 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -26.795 6.583 13.020 30.509 hybrid contribution 0.291 0.406 0.276 0.570 sum -26.504 6.989 13.296 30.465 Atomic orbital electron populations 1.20715 0.91132 1.02555 1.02162 1.19807 0.96160 0.93001 1.03444 1.20788 0.93278 0.97637 0.98866 1.21234 0.95391 0.96956 1.08522 1.18821 0.82403 0.93628 0.97188 1.86137 1.16085 1.31345 1.88445 1.23131 0.92614 0.84616 1.02371 1.21296 0.90473 0.99480 0.88893 1.46112 1.09155 1.64054 1.20080 1.21544 0.81025 0.77607 0.89876 1.90652 1.51277 1.52598 1.47317 1.21662 1.01546 1.00429 0.92545 1.19369 0.89202 0.97560 0.97521 1.21123 0.93874 1.39298 1.01931 0.90931 1.24981 0.98585 0.94426 0.95329 1.69916 1.17044 1.42684 1.24626 0.86788 0.80734 0.79983 0.81997 1.20239 1.21468 1.18548 1.19311 0.93247 0.93710 1.04846 1.20636 1.00376 0.92986 1.02417 1.20778 0.92408 0.97829 0.99241 0.91411 0.91705 0.91783 0.85973 0.85456 0.91202 0.90553 0.89578 0.90601 0.76441 0.89567 0.89621 0.95846 0.96269 0.92743 0.91368 0.91663 0.90742 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.12 -1.00 5.88 -104.60 -0.62 -1.61 16 3 C -0.09 -0.71 9.69 -39.61 -0.38 -1.09 16 4 C -0.20 -1.78 9.04 -39.43 -0.36 -2.14 16 5 C 0.12 1.29 6.66 -39.22 -0.26 1.03 16 6 O -0.31 -3.27 9.13 -19.41 -0.18 -3.45 16 7 C 0.05 0.41 4.87 37.16 0.18 0.59 16 8 C 0.12 1.37 6.06 -4.04 -0.02 1.35 16 9 N -0.74 -9.94 5.50 -60.29 -0.33 -10.28 16 10 C 0.51 9.38 7.83 -10.98 -0.09 9.29 16 11 O -0.54 -12.08 15.98 5.56 0.09 -11.99 16 12 C -0.12 -2.40 5.64 -27.88 -0.16 -2.56 16 13 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 14 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 18 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 22 C -0.11 -1.10 5.89 -104.47 -0.62 -1.72 16 23 C -0.11 -0.98 9.79 36.01 0.35 -0.63 16 24 C -0.08 -0.73 9.35 -39.60 -0.37 -1.10 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 27 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 29 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 30 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 31 H 0.08 0.51 7.66 -51.93 -0.40 0.11 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.40 4.52 8.47 -40.82 -0.35 4.18 16 35 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 38 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 42 H 0.07 0.77 7.53 -51.93 -0.39 0.38 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -35.00 359.81 -8.25 -43.25 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.85 Total: -1.18 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -2.50 Total: -12.46 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.44 Total: -37.74 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.09 Total: -15.43 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.00 -8.25 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571849911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.031 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds