Wall clock time and date at job start Tue Mar 31 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38281 * 119.94546 * 2 1 4 4 C 1.38130 * 120.05783 * 179.97438 * 3 2 1 5 5 C 1.38757 * 119.94053 * 0.02562 * 4 3 2 6 6 O 1.35896 * 120.05265 * 180.02562 * 5 4 3 7 7 C 1.42905 * 117.00039 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.46728 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.47177 * 65.00458 * 8 7 6 10 10 C 1.34778 * 120.00010 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00275 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99954 * 179.97438 * 10 9 8 13 13 C 1.52993 * 109.46912 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.47087 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99563 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00282 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99971 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99603 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46583 * 90.00905 * 18 16 14 20 20 H 1.48500 * 109.46674 * 210.00373 * 18 16 14 21 21 H 1.48497 * 109.47394 * 330.00502 * 18 16 14 22 22 C 1.38709 * 119.88984 * 0.27738 * 5 4 3 23 23 C 1.50701 * 120.02948 * 179.72382 * 22 5 4 24 24 C 1.38166 * 119.94128 * 359.44794 * 22 5 4 25 25 H 1.08995 * 109.46770 * 90.00180 * 1 2 3 26 26 H 1.08999 * 109.47261 * 209.99882 * 1 2 3 27 27 H 1.09001 * 109.47108 * 330.00183 * 1 2 3 28 28 H 1.07996 * 119.97422 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.02883 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47187 * 300.00222 * 7 6 5 31 31 H 1.09001 * 109.46558 * 60.00270 * 7 6 5 32 32 H 1.09000 * 109.46738 * 185.00163 * 8 7 6 33 33 H 1.08994 * 109.47465 * 305.00250 * 8 7 6 34 34 H 0.97003 * 120.00376 * 359.97438 * 9 8 7 35 35 H 1.08990 * 109.46967 * 300.00350 * 12 10 9 36 36 H 1.09003 * 109.46447 * 60.00072 * 12 10 9 37 37 H 1.09000 * 109.47744 * 300.00015 * 13 12 10 38 38 H 1.08999 * 109.47626 * 60.00379 * 13 12 10 39 39 H 0.97005 * 119.99545 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.46852 * 89.99583 * 23 22 5 41 41 H 1.08994 * 109.46996 * 210.00468 * 23 22 5 42 42 H 1.08996 * 109.46797 * 330.00359 * 23 22 5 43 43 H 1.07999 * 119.97225 * 180.27358 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2735 -0.0001 0.0005 6 8 5.6324 -0.0001 0.0016 7 6 6.2812 1.2732 0.0021 8 6 7.7980 1.0726 0.0039 9 7 8.2071 0.4298 -1.2473 10 6 9.5074 0.1533 -1.4692 11 8 10.3390 0.4371 -0.6332 12 6 9.9282 -0.5085 -2.7561 13 6 11.4451 -0.7078 -2.7548 14 6 11.8659 -1.3691 -4.0420 15 1 11.1254 -1.6223 -4.7862 16 6 13.1962 -1.6518 -4.2690 17 7 13.5633 -2.2293 -5.3921 18 14 14.4769 -1.2145 -2.9813 19 1 14.6501 -2.3564 -2.0479 20 1 15.7702 -0.9206 -3.6494 21 1 14.0285 -0.0190 -2.2232 22 6 3.5788 -1.2007 -0.0058 23 6 4.3303 -2.5069 -0.0121 24 6 2.1971 -1.1979 -0.0006 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6560 2.1327 -0.0004 29 1 4.1172 2.1370 0.0001 30 1 5.9890 1.8302 -0.8881 31 1 5.9876 1.8301 0.8919 32 1 8.2922 2.0399 0.0939 33 1 8.0800 0.4408 0.8461 34 1 7.5421 0.2030 -1.9162 35 1 9.4343 -1.4760 -2.8455 36 1 9.6457 0.1228 -3.5985 37 1 11.9387 0.2599 -2.6657 38 1 11.7280 -1.3389 -1.9124 39 1 14.4993 -2.4279 -5.5519 40 1 4.5111 -2.8269 1.0140 41 1 3.7403 -3.2630 -0.5301 42 1 5.2831 -2.3753 -0.5249 43 1 1.6557 -2.1324 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571849911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:51 Heat of formation + Delta-G solvation = -96.695905 kcal Electronic energy + Delta-G solvation = -22076.051094 eV Core-core repulsion = 18698.702084 eV Total energy + Delta-G solvation = -3377.349010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32328 -40.62326 -38.77956 -36.00380 -35.49817 -34.10144 -33.35432 -32.46820 -30.87487 -28.12367 -27.96068 -26.90069 -24.74852 -23.15545 -22.23551 -21.60605 -21.23594 -19.22741 -19.09560 -17.72597 -17.51823 -16.98502 -16.61250 -16.34833 -16.16050 -15.81145 -15.41774 -14.94679 -14.80089 -14.63778 -14.55733 -14.21293 -14.07633 -13.97182 -13.66079 -13.40708 -13.33583 -12.90841 -12.88668 -12.71893 -12.56764 -12.18632 -12.10130 -11.96925 -11.77182 -11.71362 -11.65008 -11.40328 -10.78411 -10.78340 -10.11404 -9.74411 -8.90252 -8.31642 -6.34617 0.39072 0.47686 1.33479 1.34942 1.50309 1.67812 2.13997 2.28087 2.35011 2.77761 3.03851 3.66457 3.86398 3.92218 4.00912 4.05423 4.09660 4.25000 4.36089 4.39743 4.40211 4.47207 4.51123 4.67927 4.71501 4.78526 4.80180 4.82354 4.89498 5.00494 5.03665 5.16753 5.31601 5.35302 5.40708 5.44409 5.45524 5.51905 5.61018 5.71180 5.91908 6.23335 6.46341 6.54673 6.71685 7.28504 7.30660 8.84018 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030228 B = 0.002474 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.075399 B =11317.041267 C =11767.063579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.130 4.130 3 C -0.095 4.095 4 C -0.207 4.207 5 C 0.104 3.896 6 O -0.325 6.325 7 C 0.054 3.946 8 C 0.121 3.879 9 N -0.718 5.718 10 C 0.515 3.485 11 O -0.586 6.586 12 C -0.118 4.118 13 C 0.005 3.995 14 C -0.530 4.530 15 H 0.049 0.951 16 C 0.012 3.988 17 N -0.943 5.943 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.132 4.132 23 C -0.104 4.104 24 C -0.093 4.093 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.414 0.586 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.012 0.988 38 H 0.008 0.992 39 H 0.267 0.733 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.608 7.823 13.553 33.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.130 4.130 3 C -0.113 4.113 4 C -0.225 4.225 5 C 0.059 3.941 6 O -0.240 6.240 7 C -0.021 4.021 8 C -0.003 4.003 9 N -0.372 5.372 10 C 0.304 3.696 11 O -0.466 6.466 12 C -0.157 4.157 13 C -0.033 4.033 14 C -0.568 4.568 15 H 0.068 0.932 16 C -0.186 4.186 17 N -0.584 5.584 18 Si 0.764 3.236 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.185 1.185 22 C -0.132 4.132 23 C -0.161 4.161 24 C -0.111 4.111 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.251 0.749 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.030 0.970 38 H 0.026 0.974 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -28.752 7.813 14.067 32.949 hybrid contribution 0.740 0.013 -0.091 0.746 sum -28.012 7.826 13.977 32.269 Atomic orbital electron populations 1.20758 0.89401 1.03475 1.02814 1.20170 0.97559 0.92835 1.02438 1.21127 0.93275 0.98625 0.98240 1.21481 0.95900 0.97119 1.08023 1.19015 0.82251 0.94375 0.98416 1.86092 1.16608 1.32420 1.88869 1.23150 0.90321 0.84326 1.04320 1.21454 0.92659 0.99215 0.86938 1.45895 1.07663 1.62457 1.21143 1.21143 0.82237 0.77454 0.88791 1.90637 1.52810 1.54767 1.48408 1.21493 0.97953 1.01928 0.94365 1.19221 0.93071 0.96038 0.94957 1.21438 0.93562 1.38941 1.02820 0.93241 1.25831 1.00917 0.94540 0.97298 1.70028 1.17824 1.44081 1.26466 0.85806 0.78447 0.79804 0.79514 1.19419 1.20274 1.18495 1.19543 0.94042 0.93912 1.05750 1.20597 0.99762 0.93425 1.02326 1.21020 0.92068 0.98923 0.99070 0.90789 0.90989 0.90740 0.83888 0.83725 0.89473 0.88274 0.88706 0.91966 0.74908 0.88282 0.87912 0.97008 0.97382 0.92370 0.91409 0.90458 0.92379 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 71.24 0.71 -0.23 16 2 C -0.13 -1.83 5.88 -19.85 -0.12 -1.95 16 3 C -0.09 -1.31 9.69 22.25 0.22 -1.10 16 4 C -0.21 -3.20 9.04 22.37 0.20 -3.00 16 5 C 0.10 2.02 6.66 22.51 0.15 2.17 16 6 O -0.33 -6.53 9.13 -92.39 -0.84 -7.37 16 7 C 0.05 0.79 4.87 71.98 0.35 1.14 16 8 C 0.12 2.51 6.06 86.38 0.52 3.03 16 9 N -0.72 -18.18 5.50 -463.06 -2.55 -20.73 16 10 C 0.52 18.44 7.83 87.66 0.69 19.13 16 11 O -0.59 -25.91 15.98 -3.03 -0.05 -25.96 16 12 C -0.12 -4.54 5.64 29.85 0.17 -4.37 16 13 C 0.01 0.26 3.33 29.85 0.10 0.36 16 14 C -0.53 -31.00 9.66 25.60 0.25 -30.75 16 15 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 16 C 0.01 0.71 5.47 84.66 0.46 1.17 16 17 N -0.94 -59.63 13.96 21.45 0.30 -59.34 16 18 Si 0.94 47.27 27.47 68.60 1.88 49.15 16 19 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.26 -13.00 6.54 99.48 0.65 -12.35 16 22 C -0.13 -2.53 5.89 -19.77 -0.12 -2.64 16 23 C -0.10 -1.89 9.79 71.24 0.70 -1.19 16 24 C -0.09 -1.47 9.35 22.25 0.21 -1.27 16 25 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.52 8.08 -2.39 -0.02 0.51 16 27 H 0.07 0.50 8.08 -2.39 -0.02 0.48 16 28 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 29 H 0.15 1.59 6.30 -2.91 -0.02 1.57 16 30 H 0.09 1.00 7.66 -2.39 -0.02 0.98 16 31 H 0.10 1.04 7.66 -2.39 -0.02 1.02 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.41 8.50 8.47 -92.71 -0.79 7.71 16 35 H 0.10 3.54 8.14 -2.39 -0.02 3.53 16 36 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 37 H 0.01 0.61 7.16 -2.39 -0.02 0.59 16 38 H 0.01 0.41 7.53 -2.39 -0.02 0.39 16 39 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 42 H 0.06 1.21 7.53 -2.39 -0.02 1.20 16 43 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -75.85 359.81 3.39 -72.46 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.16 Total: 11.27 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.49 Total: -19.50 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -2.25 Total: -80.06 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.89 Total: -33.33 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.88 Total: 49.15 kcal Total: -75.85 3.39 -72.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571849911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.237 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds