Wall clock time and date at job start Tue Mar 31 2020 06:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35648 * 117.00336 * 2 1 4 4 C 1.38714 * 120.14822 * 359.72758 * 3 2 1 5 5 C 1.38060 * 120.08301 * 179.76494 * 4 3 2 6 6 C 1.50693 * 119.80517 * 180.23043 * 5 4 3 7 7 C 1.38547 * 120.38964 * 0.51417 * 5 4 3 8 8 C 1.37788 * 120.30159 * 359.74111 * 7 5 4 9 9 C 1.39709 * 119.90887 * 0.02562 * 8 7 5 10 10 C 1.47529 * 120.19488 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00262 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99721 * 0.02562 * 10 9 8 13 13 C 1.46506 * 119.99831 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47042 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46761 * 299.99643 * 14 13 12 16 16 C 1.53002 * 109.47347 * 59.99405 * 14 13 12 17 17 C 1.50695 * 109.47044 * 179.97438 * 14 13 12 18 18 H 1.08004 * 120.00457 * 359.97438 * 17 14 13 19 19 C 1.37883 * 119.99864 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99928 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 119.99831 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47502 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47289 * 120.00396 * 21 19 17 24 24 H 1.48499 * 109.47334 * 239.99953 * 21 19 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99686 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99807 * 1 2 3 28 28 H 1.07999 * 119.95750 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.47583 * 270.27928 * 6 5 4 30 30 H 1.09007 * 109.47212 * 30.27799 * 6 5 4 31 31 H 1.08998 * 109.47200 * 150.27773 * 6 5 4 32 32 H 1.08000 * 119.84772 * 179.72190 * 7 5 4 33 33 H 1.08003 * 120.04940 * 179.97438 * 8 7 5 34 34 H 0.96992 * 120.00329 * 0.02562 * 12 10 9 35 35 H 1.09003 * 109.46479 * 299.99711 * 13 12 10 36 36 H 1.08995 * 109.47711 * 59.99541 * 13 12 10 37 37 H 1.09002 * 109.47035 * 60.00232 * 15 14 13 38 38 H 1.09002 * 109.47188 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.46937 * 300.00225 * 15 14 13 40 40 H 1.09004 * 109.46759 * 60.00390 * 16 14 13 41 41 H 1.09002 * 109.46843 * 180.02562 * 16 14 13 42 42 H 1.08995 * 109.47353 * 299.99980 * 16 14 13 43 43 H 0.97000 * 119.99807 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2925 2.3739 -0.0057 5 6 1.9208 3.6033 -0.0008 6 6 1.0972 4.8653 -0.0018 7 6 3.3039 3.6836 -0.0009 8 6 4.0669 2.5363 -0.0005 9 6 3.4442 1.2856 -0.0006 10 6 4.2550 0.0531 -0.0007 11 8 3.7094 -1.0336 -0.0013 12 7 5.6005 0.1316 -0.0003 13 6 6.4057 -1.0923 -0.0010 14 6 7.8911 -0.7256 0.0003 15 6 8.2141 0.0981 -1.2480 16 6 8.2125 0.0957 1.2505 17 6 8.7193 -1.9845 0.0002 18 1 8.2347 -2.9498 -0.0003 19 6 10.0958 -1.9042 0.0007 20 7 10.6858 -0.7289 0.0019 21 14 11.1224 -3.4648 0.0013 22 1 10.2248 -4.6479 0.0004 23 1 11.9798 -3.4937 -1.2108 24 1 11.9788 -3.4935 1.2141 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2139 2.3195 -0.0097 29 1 0.8986 5.1689 -1.0297 30 1 0.1532 4.6836 0.5122 31 1 1.6439 5.6563 0.5115 32 1 3.7862 4.6499 -0.0016 33 1 5.1448 2.6036 -0.0010 34 1 6.0357 0.9984 0.0005 35 1 6.1758 -1.6789 0.8885 36 1 6.1764 -1.6777 -0.8914 37 1 7.6150 1.0087 -1.2475 38 1 9.2724 0.3590 -1.2474 39 1 7.9850 -0.4870 -2.1387 40 1 7.9824 -0.4911 2.1398 41 1 9.2707 0.3574 1.2511 42 1 7.6135 1.0063 1.2510 43 1 11.6542 -0.6724 0.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574412169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:20 Heat of formation + Delta-G solvation = -58.203787 kcal Electronic energy + Delta-G solvation = -23353.897066 eV Core-core repulsion = 19978.217200 eV Total energy + Delta-G solvation = -3375.679866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.51764 -38.69540 -37.60525 -36.21444 -33.39445 -32.70228 -30.76005 -30.20850 -28.13260 -27.16727 -25.68657 -25.47019 -24.67459 -22.56922 -21.99427 -20.13610 -18.80996 -18.02247 -16.98266 -16.35382 -15.83644 -15.78185 -14.97109 -14.73074 -14.52215 -14.50554 -14.27474 -13.86916 -13.81659 -13.06130 -12.87145 -12.80942 -12.48008 -12.22758 -12.13417 -12.12382 -11.57902 -11.33637 -11.24233 -11.15785 -11.03040 -10.84058 -10.62995 -10.34489 -10.16756 -9.59008 -9.44750 -9.15765 -8.97591 -8.73884 -8.41295 -8.31871 -8.11080 -5.99056 -4.08637 0.86590 1.32964 3.14042 3.22975 3.29547 3.38019 3.43001 3.81650 4.00199 4.43109 4.51416 4.62150 4.87294 4.97144 5.03422 5.04490 5.24613 5.27777 5.31591 5.36035 5.39238 5.50130 5.53353 5.83283 6.06821 6.17720 6.32681 6.37799 6.39993 6.55949 6.62218 6.85275 6.86309 6.99344 7.06887 7.12424 7.34654 7.40961 7.59638 7.73059 8.04840 8.13386 8.23736 8.42882 8.84516 8.93204 9.56976 11.02431 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027388 B = 0.003508 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.085890 B = 7980.236664 C = 8800.653390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.277 6.277 3 C 0.184 3.816 4 C -0.224 4.224 5 C -0.029 4.029 6 C -0.117 4.117 7 C -0.168 4.168 8 C -0.044 4.044 9 C -0.169 4.169 10 C 0.548 3.452 11 O -0.532 6.532 12 N -0.715 5.715 13 C 0.134 3.866 14 C 0.055 3.945 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.131 0.869 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.395 0.605 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.005 0.995 38 H 0.085 0.915 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.085 0.915 42 H 0.005 0.995 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.820 11.687 -0.033 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.188 6.188 3 C 0.136 3.864 4 C -0.243 4.243 5 C -0.029 4.029 6 C -0.174 4.174 7 C -0.186 4.186 8 C -0.062 4.062 9 C -0.173 4.173 10 C 0.334 3.666 11 O -0.410 6.410 12 N -0.367 5.367 13 C 0.011 3.989 14 C 0.054 3.946 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.149 0.851 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.231 0.769 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.024 0.976 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.104 0.896 42 H 0.024 0.976 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.923 10.736 -0.031 20.892 hybrid contribution 0.589 -0.221 -0.004 0.629 sum -17.334 10.515 -0.036 20.274 Atomic orbital electron populations 1.23133 0.79190 1.04149 1.00892 1.86421 1.20343 1.25395 1.86652 1.19042 0.91043 0.84706 0.91599 1.21049 0.99956 0.91528 1.11779 1.19835 0.94023 0.94508 0.94545 1.20859 0.99331 0.94579 1.02628 1.20854 0.92976 0.98538 1.06264 1.21243 1.00145 0.90774 0.94084 1.19571 0.90909 0.94603 1.12194 1.17982 0.82534 0.88299 0.77737 1.90779 1.71830 1.28642 1.49792 1.46219 1.05311 1.11301 1.73889 1.21701 0.92142 0.84514 1.00513 1.18367 0.87963 0.95417 0.92823 1.21828 1.03266 0.96097 0.97618 1.21827 1.03261 0.96095 0.97619 1.21041 0.90889 0.91800 1.50529 0.92360 1.24882 0.97791 0.96033 0.94851 1.69816 1.09334 1.22539 1.50815 0.86519 0.80228 0.83680 0.77480 1.19754 1.21097 1.21091 0.88090 0.92815 0.92807 0.85088 0.90716 0.91455 0.91055 0.85352 0.84758 0.76926 0.92717 0.92712 0.97561 0.89595 0.95421 0.95414 0.89600 0.97569 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.28 -4.34 8.57 -40.52 -0.35 -4.69 16 3 C 0.18 2.74 6.70 -38.69 -0.26 2.48 16 4 C -0.22 -2.54 8.67 -39.47 -0.34 -2.89 16 5 C -0.03 -0.29 5.88 -104.58 -0.62 -0.91 16 6 C -0.12 -0.79 10.00 36.00 0.36 -0.43 16 7 C -0.17 -1.81 9.67 -39.63 -0.38 -2.20 16 8 C -0.04 -0.57 9.54 -39.20 -0.37 -0.94 16 9 C -0.17 -2.72 5.89 -104.85 -0.62 -3.34 16 10 C 0.55 10.79 7.76 -12.47 -0.10 10.70 16 11 O -0.53 -12.30 15.16 -16.59 -0.25 -12.56 16 12 N -0.72 -13.76 4.91 -61.35 -0.30 -14.06 16 13 C 0.13 2.98 4.50 -4.04 -0.02 2.96 16 14 C 0.05 1.30 0.50 -155.66 -0.08 1.22 16 15 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 16 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 17 C -0.50 -13.43 8.01 -34.44 -0.28 -13.71 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.79 9.35 55.43 0.52 -23.28 16 21 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 27 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 28 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.39 8.08 -51.92 -0.42 -0.03 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.13 1.57 6.40 -52.48 -0.34 1.24 16 34 H 0.39 6.78 4.19 -40.82 -0.17 6.60 16 35 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 38 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 43 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -31.26 344.31 -7.73 -38.99 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.32 Total: 4.03 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.20 Total: -9.57 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.22 Total: -37.33 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.60 Total: -17.25 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.26 -7.73 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574412169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.216 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds