Wall clock time and date at job start Tue Mar 31 2020 06:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35648 * 117.00336 * 2 1 4 4 C 1.38714 * 120.14822 * 359.72758 * 3 2 1 5 5 C 1.38060 * 120.08301 * 179.76494 * 4 3 2 6 6 C 1.50693 * 119.80517 * 180.23043 * 5 4 3 7 7 C 1.38547 * 120.38964 * 0.51417 * 5 4 3 8 8 C 1.37788 * 120.30159 * 359.74111 * 7 5 4 9 9 C 1.39709 * 119.90887 * 0.02562 * 8 7 5 10 10 C 1.47529 * 120.19488 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00262 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99721 * 0.02562 * 10 9 8 13 13 C 1.46506 * 119.99831 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47042 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46761 * 299.99643 * 14 13 12 16 16 C 1.53002 * 109.47347 * 59.99405 * 14 13 12 17 17 C 1.50695 * 109.47044 * 179.97438 * 14 13 12 18 18 H 1.08004 * 120.00457 * 359.97438 * 17 14 13 19 19 C 1.37883 * 119.99864 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99928 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 119.99831 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47502 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47289 * 120.00396 * 21 19 17 24 24 H 1.48499 * 109.47334 * 239.99953 * 21 19 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99686 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99807 * 1 2 3 28 28 H 1.07999 * 119.95750 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.47583 * 270.27928 * 6 5 4 30 30 H 1.09007 * 109.47212 * 30.27799 * 6 5 4 31 31 H 1.08998 * 109.47200 * 150.27773 * 6 5 4 32 32 H 1.08000 * 119.84772 * 179.72190 * 7 5 4 33 33 H 1.08003 * 120.04940 * 179.97438 * 8 7 5 34 34 H 0.96992 * 120.00329 * 0.02562 * 12 10 9 35 35 H 1.09003 * 109.46479 * 299.99711 * 13 12 10 36 36 H 1.08995 * 109.47711 * 59.99541 * 13 12 10 37 37 H 1.09002 * 109.47035 * 60.00232 * 15 14 13 38 38 H 1.09002 * 109.47188 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.46937 * 300.00225 * 15 14 13 40 40 H 1.09004 * 109.46759 * 60.00390 * 16 14 13 41 41 H 1.09002 * 109.46843 * 180.02562 * 16 14 13 42 42 H 1.08995 * 109.47353 * 299.99980 * 16 14 13 43 43 H 0.97000 * 119.99807 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2925 2.3739 -0.0057 5 6 1.9208 3.6033 -0.0008 6 6 1.0972 4.8653 -0.0018 7 6 3.3039 3.6836 -0.0009 8 6 4.0669 2.5363 -0.0005 9 6 3.4442 1.2856 -0.0006 10 6 4.2550 0.0531 -0.0007 11 8 3.7094 -1.0336 -0.0013 12 7 5.6005 0.1316 -0.0003 13 6 6.4057 -1.0923 -0.0010 14 6 7.8911 -0.7256 0.0003 15 6 8.2141 0.0981 -1.2480 16 6 8.2125 0.0957 1.2505 17 6 8.7193 -1.9845 0.0002 18 1 8.2347 -2.9498 -0.0003 19 6 10.0958 -1.9042 0.0007 20 7 10.6858 -0.7289 0.0019 21 14 11.1224 -3.4648 0.0013 22 1 10.2248 -4.6479 0.0004 23 1 11.9798 -3.4937 -1.2108 24 1 11.9788 -3.4935 1.2141 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2139 2.3195 -0.0097 29 1 0.8986 5.1689 -1.0297 30 1 0.1532 4.6836 0.5122 31 1 1.6439 5.6563 0.5115 32 1 3.7862 4.6499 -0.0016 33 1 5.1448 2.6036 -0.0010 34 1 6.0357 0.9984 0.0005 35 1 6.1758 -1.6789 0.8885 36 1 6.1764 -1.6777 -0.8914 37 1 7.6150 1.0087 -1.2475 38 1 9.2724 0.3590 -1.2474 39 1 7.9850 -0.4870 -2.1387 40 1 7.9824 -0.4911 2.1398 41 1 9.2707 0.3574 1.2511 42 1 7.6135 1.0063 1.2510 43 1 11.6542 -0.6724 0.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574412169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:20 Heat of formation + Delta-G solvation = -75.943803 kcal Electronic energy + Delta-G solvation = -23354.666331 eV Core-core repulsion = 19978.217200 eV Total energy + Delta-G solvation = -3376.449131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.60770 -40.13300 -38.54991 -38.03251 -35.04833 -33.84115 -32.53982 -31.14315 -28.94192 -28.20152 -27.57263 -27.36194 -26.31608 -23.58499 -22.99095 -21.48229 -20.62293 -19.30421 -18.13601 -17.71087 -17.41027 -16.81238 -16.61364 -16.25769 -16.06001 -15.74140 -15.27961 -14.83496 -14.63014 -14.62793 -14.45485 -14.34376 -13.94989 -13.23843 -13.14901 -13.07359 -13.00206 -12.98173 -12.68313 -12.57462 -12.36711 -12.25619 -12.15324 -12.08437 -11.85740 -11.49556 -11.27560 -10.81610 -10.67386 -10.40322 -10.03247 -9.79835 -9.18668 -8.02623 -6.18257 -0.14098 0.41472 1.41274 1.45082 1.55014 1.92355 2.29309 2.37047 2.50262 2.84236 3.20710 3.67949 3.77161 3.97771 4.13823 4.31062 4.31868 4.36790 4.42795 4.49798 4.53495 4.66426 4.68825 4.73759 4.83249 4.89017 4.97650 5.04418 5.09488 5.18433 5.19027 5.25793 5.30350 5.36302 5.55314 5.58881 5.66354 5.67044 5.79739 6.14008 6.20285 6.42659 6.43320 6.70579 6.85280 7.34753 7.49222 8.96708 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027388 B = 0.003508 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.085890 B = 7980.236664 C = 8800.653390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.167 3.833 4 C -0.223 4.223 5 C -0.018 4.018 6 C -0.117 4.117 7 C -0.166 4.166 8 C -0.046 4.046 9 C -0.208 4.208 10 C 0.545 3.455 11 O -0.578 6.578 12 N -0.708 5.708 13 C 0.150 3.850 14 C 0.052 3.948 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.530 4.530 18 H 0.043 0.957 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.947 3.053 22 H -0.277 1.277 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.160 0.840 33 H 0.143 0.857 34 H 0.406 0.594 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.065 0.935 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.065 0.935 42 H 0.036 0.964 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.235 14.500 -0.036 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.119 3.881 4 C -0.241 4.241 5 C -0.018 4.018 6 C -0.173 4.173 7 C -0.184 4.184 8 C -0.065 4.065 9 C -0.211 4.211 10 C 0.335 3.665 11 O -0.459 6.459 12 N -0.361 5.361 13 C 0.026 3.974 14 C 0.051 3.949 15 C -0.178 4.178 16 C -0.178 4.178 17 C -0.569 4.569 18 H 0.061 0.939 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.773 3.227 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.125 0.875 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.176 0.824 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.177 0.823 33 H 0.160 0.840 34 H 0.244 0.756 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.338 13.588 -0.034 23.635 hybrid contribution 0.915 -1.016 -0.004 1.367 sum -18.423 12.572 -0.039 22.304 Atomic orbital electron populations 1.23421 0.76695 1.05307 1.02691 1.86357 1.23202 1.26637 1.86897 1.19338 0.90971 0.85649 0.92144 1.21354 1.01185 0.90673 1.10883 1.20355 0.94300 0.95548 0.91594 1.20967 0.99491 0.92892 1.03931 1.21244 0.93383 0.98904 1.04882 1.21389 1.00830 0.90372 0.93861 1.19428 0.91424 0.93800 1.16495 1.18624 0.82430 0.89266 0.76221 1.90736 1.72537 1.30734 1.51903 1.46014 1.05344 1.10633 1.74105 1.21273 0.91909 0.85501 0.98718 1.18363 0.88172 0.94745 0.93624 1.21669 1.02389 0.97032 0.96679 1.21667 1.02385 0.97030 0.96681 1.21294 0.91805 0.92392 1.51366 0.93904 1.25450 0.98533 0.98504 0.94598 1.69907 1.09555 1.23574 1.50636 0.85685 0.78744 0.80630 0.77612 1.20181 1.20580 1.20572 0.87483 0.90910 0.90905 0.82376 0.89259 0.90073 0.89570 0.82268 0.83963 0.75604 0.94601 0.94589 0.94534 0.91582 0.96401 0.96397 0.91586 0.94545 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -10.13 8.57 -68.71 -0.59 -10.72 16 3 C 0.17 4.88 6.70 22.85 0.15 5.03 16 4 C -0.22 -4.45 8.67 22.34 0.19 -4.26 16 5 C -0.02 -0.29 5.88 -19.84 -0.12 -0.41 16 6 C -0.12 -0.99 10.00 71.23 0.71 -0.28 16 7 C -0.17 -3.01 9.67 22.24 0.22 -2.79 16 8 C -0.05 -1.12 9.54 22.52 0.21 -0.90 16 9 C -0.21 -6.68 5.89 -20.01 -0.12 -6.80 16 10 C 0.55 22.18 7.76 86.69 0.67 22.85 16 11 O -0.58 -28.13 15.16 16.91 0.26 -27.88 16 12 N -0.71 -27.70 4.91 -466.26 -2.29 -29.99 16 13 C 0.15 6.92 4.50 86.38 0.39 7.31 16 14 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 15 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 16 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 17 C -0.53 -28.98 8.01 25.60 0.21 -28.77 16 18 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 19 C 0.03 1.55 5.15 84.66 0.44 1.99 16 20 N -0.90 -48.39 9.35 21.45 0.20 -48.19 16 21 Si 0.95 43.42 29.54 68.60 2.03 45.44 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 25 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 1.03 7.65 -2.39 -0.02 1.01 16 27 H 0.07 1.03 7.67 -2.38 -0.02 1.01 16 28 H 0.16 2.17 6.30 -2.91 -0.02 2.15 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.52 8.08 -2.38 -0.02 0.50 16 31 H 0.09 0.54 8.08 -2.39 -0.02 0.52 16 32 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.14 3.06 6.40 -2.91 -0.02 3.04 16 34 H 0.41 13.68 4.19 -92.71 -0.39 13.29 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.04 1.40 6.86 -2.39 -0.02 1.39 16 38 H 0.07 3.32 6.07 -2.39 -0.01 3.30 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.02 0.80 8.14 -2.38 -0.02 0.79 16 41 H 0.07 3.32 6.07 -2.39 -0.01 3.30 16 42 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 43 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -70.41 344.31 5.44 -64.97 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.63 Total: 19.40 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 5.21 Total: -13.05 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -2.09 Total: -78.18 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.33 Total: -38.60 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -70.41 5.44 -64.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574412169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.971 kcal (2) G-P(sol) polarization free energy of solvation -70.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds