Wall clock time and date at job start Tue Mar 31 2020 06:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35982 * 117.00082 * 2 1 4 4 C 1.38552 * 120.08234 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.01382 * 180.25463 * 4 3 2 6 6 C 1.38273 * 120.17863 * 359.43807 * 5 4 3 7 7 C 1.50698 * 119.92180 * 180.28289 * 6 5 4 8 8 C 1.38198 * 120.16626 * 0.55568 * 6 5 4 9 9 C 1.38725 * 119.98452 * 359.72823 * 8 6 5 10 10 N 1.40123 * 120.09377 * 179.97438 * 9 8 6 11 11 C 1.34770 * 119.99866 * 325.37027 * 10 9 8 12 12 O 1.21296 * 120.00280 * 4.45359 * 11 10 9 13 13 C 1.50702 * 120.00060 * 184.44688 * 11 10 9 14 14 C 1.52995 * 109.47144 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47030 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47127 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.46915 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00713 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99847 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00246 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00026 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47335 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47423 * 120.00162 * 21 19 17 24 24 H 1.48504 * 109.47125 * 240.00107 * 21 19 17 25 25 H 1.08998 * 109.47100 * 59.99103 * 1 2 3 26 26 H 1.08999 * 109.47009 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46676 * 299.99740 * 1 2 3 28 28 H 1.07995 * 119.99191 * 359.97018 * 4 3 2 29 29 H 1.07995 * 119.90722 * 179.72408 * 5 4 3 30 30 H 1.09000 * 109.47410 * 270.28155 * 7 6 5 31 31 H 1.09001 * 109.46909 * 30.27336 * 7 6 5 32 32 H 1.08994 * 109.47909 * 150.27692 * 7 6 5 33 33 H 1.07996 * 120.01134 * 179.74363 * 8 6 5 34 34 H 0.96996 * 119.99823 * 145.36574 * 10 9 8 35 35 H 1.08997 * 109.47213 * 300.00051 * 13 11 10 36 36 H 1.08996 * 109.46915 * 59.99871 * 13 11 10 37 37 H 1.09007 * 109.47285 * 299.99598 * 14 13 11 38 38 H 1.08996 * 109.47539 * 59.99985 * 14 13 11 39 39 H 1.08997 * 109.47150 * 299.99675 * 15 14 13 40 40 H 1.09004 * 109.46984 * 59.99859 * 15 14 13 41 41 H 1.08997 * 109.47140 * 300.00049 * 16 15 14 42 42 H 1.09004 * 109.47004 * 60.00238 * 16 15 14 43 43 H 0.97002 * 120.00288 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9225 3.6057 -0.0048 6 6 3.3032 3.6807 0.0011 7 6 3.9829 5.0257 0.0017 8 6 4.0615 2.5254 0.0007 9 6 3.4373 1.2864 0.0001 10 7 4.2039 0.1135 -0.0008 11 6 5.3763 0.0753 -0.6644 12 8 5.8071 1.0785 -1.1929 13 6 6.1522 -1.2138 -0.7499 14 6 7.4352 -0.9847 -1.5512 15 6 8.2226 -2.2937 -1.6384 16 6 9.5054 -2.0647 -2.4403 17 6 10.2812 -3.3539 -2.5257 18 1 9.8975 -4.2473 -2.0555 19 6 11.4803 -3.3931 -3.2051 20 7 11.9473 -2.3054 -3.7782 21 14 12.4416 -4.9912 -3.3115 22 1 11.7060 -6.0604 -2.5897 23 1 12.6035 -5.3776 -4.7362 24 1 13.7793 -4.8063 -2.6937 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2148 2.3196 0.0005 29 1 1.3339 4.5111 -0.0089 30 1 4.1467 5.3505 -1.0258 31 1 3.3524 5.7512 0.5158 32 1 4.9410 4.9485 0.5154 33 1 5.1397 2.5869 0.0011 34 1 3.8908 -0.6709 0.4762 35 1 6.4070 -1.5517 0.2546 36 1 5.5446 -1.9714 -1.2448 37 1 7.1807 -0.6466 -2.5558 38 1 8.0426 -0.2273 -1.0559 39 1 8.4771 -2.6322 -0.6341 40 1 7.6149 -3.0508 -2.1340 41 1 9.2505 -1.7264 -3.4446 42 1 10.1132 -1.3074 -1.9451 43 1 12.7908 -2.3331 -4.2564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588146974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:00 Heat of formation + Delta-G solvation = -74.769522 kcal Electronic energy + Delta-G solvation = -22165.645112 eV Core-core repulsion = 18789.246901 eV Total energy + Delta-G solvation = -3376.398210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.94213 -39.45352 -37.77716 -35.19986 -34.72181 -32.63866 -31.94878 -30.59007 -29.22039 -28.16361 -26.19987 -25.66568 -23.41748 -22.11012 -21.31344 -20.18914 -19.96334 -18.50380 -17.26608 -16.83926 -16.32008 -16.12421 -15.89933 -15.55684 -14.59058 -14.53876 -14.39270 -14.27954 -13.82795 -13.78387 -13.72082 -12.68017 -12.61965 -12.50134 -12.24285 -12.12406 -11.79849 -11.70972 -11.58096 -11.46315 -11.16146 -10.98334 -10.53113 -10.46984 -10.40978 -10.39301 -9.75965 -9.59370 -9.21058 -8.95888 -8.69806 -8.29200 -7.94699 -5.93809 -3.96159 1.08141 1.18137 2.63887 2.87923 3.07134 3.34340 3.41498 3.45534 3.56782 4.50248 4.52517 4.63742 4.69287 4.80096 4.81070 4.96627 5.10300 5.14788 5.18482 5.31989 5.36629 5.41752 5.48259 5.49959 5.69374 5.75908 5.86721 5.94461 6.02384 6.14888 6.28692 6.31531 6.47369 6.56239 6.63594 6.85309 7.03065 7.11794 7.21695 7.35713 7.76175 7.91956 8.07793 8.16718 8.49681 9.11842 9.67500 11.17592 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.002464 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.966948 B =11358.979208 C =12263.070273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.092 3.908 4 C -0.188 4.188 5 C -0.101 4.101 6 C -0.104 4.104 7 C -0.109 4.109 8 C -0.087 4.087 9 C 0.127 3.873 10 N -0.672 5.672 11 C 0.512 3.488 12 O -0.519 6.519 13 C -0.137 4.137 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.519 4.519 18 H 0.055 0.945 19 C 0.054 3.946 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.149 0.851 34 H 0.413 0.587 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.897 9.985 11.089 29.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C 0.045 3.955 4 C -0.208 4.208 5 C -0.120 4.120 6 C -0.105 4.105 7 C -0.166 4.166 8 C -0.107 4.107 9 C 0.032 3.968 10 N -0.318 5.318 11 C 0.301 3.699 12 O -0.393 6.393 13 C -0.176 4.176 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.073 0.927 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.166 0.834 34 H 0.249 0.751 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.301 10.513 10.575 29.368 hybrid contribution 0.022 -1.164 0.077 1.166 sum -25.279 9.349 10.652 28.981 Atomic orbital electron populations 1.23032 0.78278 1.03930 1.01263 1.86024 1.21427 1.26519 1.89252 1.18779 0.90527 0.84935 1.01249 1.20994 0.99700 0.91806 1.08267 1.20780 0.93915 0.96928 1.00333 1.19764 0.93370 0.95455 1.01880 1.20722 1.00395 0.92981 1.02476 1.21135 1.01475 0.89354 0.98750 1.17115 0.86720 0.87534 1.05438 1.43541 1.21546 1.13793 1.52896 1.21321 0.80132 0.91844 0.76573 1.90691 1.67505 1.36111 1.45010 1.21808 0.98340 0.93884 1.03606 1.21469 0.93212 0.99759 0.99719 1.21651 0.98307 0.94423 1.00410 1.19102 0.90788 0.96874 0.95007 1.21324 1.05036 0.96074 1.33302 0.92700 1.25046 0.97674 0.96226 0.95679 1.69985 1.20516 1.27414 1.35581 0.86558 0.79946 0.83920 0.77692 1.19781 1.21065 1.21055 0.92688 0.88215 0.92732 0.85252 0.85820 0.91132 0.91722 0.91429 0.83393 0.75133 0.88808 0.88760 0.91715 0.91691 0.93420 0.93435 0.96577 0.96572 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.14 10.05 -19.68 -0.20 -3.34 16 3 C 0.09 1.02 6.70 -39.07 -0.26 0.76 16 4 C -0.19 -1.76 9.04 -39.46 -0.36 -2.12 16 5 C -0.10 -0.94 9.69 -39.57 -0.38 -1.33 16 6 C -0.10 -1.13 5.88 -104.62 -0.62 -1.74 16 7 C -0.11 -0.94 10.01 36.00 0.36 -0.58 16 8 C -0.09 -1.14 8.35 -39.42 -0.33 -1.46 16 9 C 0.13 1.62 6.32 -83.49 -0.53 1.09 16 10 N -0.67 -8.10 5.19 -9.75 -0.05 -8.15 16 11 C 0.51 7.42 7.68 -10.99 -0.08 7.34 16 12 O -0.52 -9.34 13.40 5.54 0.07 -9.27 16 13 C -0.14 -1.84 5.70 -27.88 -0.16 -1.99 16 14 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 15 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 18 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 21 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 26 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 28 H 0.13 0.87 6.30 -52.49 -0.33 0.53 16 29 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.15 2.15 6.20 -52.49 -0.33 1.82 16 34 H 0.41 3.88 8.57 -40.82 -0.35 3.53 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -34.51 359.17 -8.05 -42.55 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.83 Total: -0.51 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.17 Total: -16.75 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.69 Total: -35.11 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.12 Total: -12.60 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.51 -8.05 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588146974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.215 kcal (2) G-P(sol) polarization free energy of solvation -34.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds