Wall clock time and date at job start Tue Mar 31 2020 06:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35982 * 117.00082 * 2 1 4 4 C 1.38552 * 120.08234 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.01382 * 180.25463 * 4 3 2 6 6 C 1.38273 * 120.17863 * 359.43807 * 5 4 3 7 7 C 1.50698 * 119.92180 * 180.28289 * 6 5 4 8 8 C 1.38198 * 120.16626 * 0.55568 * 6 5 4 9 9 C 1.38725 * 119.98452 * 359.72823 * 8 6 5 10 10 N 1.40123 * 120.09377 * 179.97438 * 9 8 6 11 11 C 1.34770 * 119.99866 * 325.37027 * 10 9 8 12 12 O 1.21296 * 120.00280 * 4.45359 * 11 10 9 13 13 C 1.50702 * 120.00060 * 184.44688 * 11 10 9 14 14 C 1.52995 * 109.47144 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47030 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47127 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.46915 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00713 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99847 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00246 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00026 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47335 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47423 * 120.00162 * 21 19 17 24 24 H 1.48504 * 109.47125 * 240.00107 * 21 19 17 25 25 H 1.08998 * 109.47100 * 59.99103 * 1 2 3 26 26 H 1.08999 * 109.47009 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46676 * 299.99740 * 1 2 3 28 28 H 1.07995 * 119.99191 * 359.97018 * 4 3 2 29 29 H 1.07995 * 119.90722 * 179.72408 * 5 4 3 30 30 H 1.09000 * 109.47410 * 270.28155 * 7 6 5 31 31 H 1.09001 * 109.46909 * 30.27336 * 7 6 5 32 32 H 1.08994 * 109.47909 * 150.27692 * 7 6 5 33 33 H 1.07996 * 120.01134 * 179.74363 * 8 6 5 34 34 H 0.96996 * 119.99823 * 145.36574 * 10 9 8 35 35 H 1.08997 * 109.47213 * 300.00051 * 13 11 10 36 36 H 1.08996 * 109.46915 * 59.99871 * 13 11 10 37 37 H 1.09007 * 109.47285 * 299.99598 * 14 13 11 38 38 H 1.08996 * 109.47539 * 59.99985 * 14 13 11 39 39 H 1.08997 * 109.47150 * 299.99675 * 15 14 13 40 40 H 1.09004 * 109.46984 * 59.99859 * 15 14 13 41 41 H 1.08997 * 109.47140 * 300.00049 * 16 15 14 42 42 H 1.09004 * 109.47004 * 60.00238 * 16 15 14 43 43 H 0.97002 * 120.00288 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9225 3.6057 -0.0048 6 6 3.3032 3.6807 0.0011 7 6 3.9829 5.0257 0.0017 8 6 4.0615 2.5254 0.0007 9 6 3.4373 1.2864 0.0001 10 7 4.2039 0.1135 -0.0008 11 6 5.3763 0.0753 -0.6644 12 8 5.8071 1.0785 -1.1929 13 6 6.1522 -1.2138 -0.7499 14 6 7.4352 -0.9847 -1.5512 15 6 8.2226 -2.2937 -1.6384 16 6 9.5054 -2.0647 -2.4403 17 6 10.2812 -3.3539 -2.5257 18 1 9.8975 -4.2473 -2.0555 19 6 11.4803 -3.3931 -3.2051 20 7 11.9473 -2.3054 -3.7782 21 14 12.4416 -4.9912 -3.3115 22 1 11.7060 -6.0604 -2.5897 23 1 12.6035 -5.3776 -4.7362 24 1 13.7793 -4.8063 -2.6937 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2148 2.3196 0.0005 29 1 1.3339 4.5111 -0.0089 30 1 4.1467 5.3505 -1.0258 31 1 3.3524 5.7512 0.5158 32 1 4.9410 4.9485 0.5154 33 1 5.1397 2.5869 0.0011 34 1 3.8908 -0.6709 0.4762 35 1 6.4070 -1.5517 0.2546 36 1 5.5446 -1.9714 -1.2448 37 1 7.1807 -0.6466 -2.5558 38 1 8.0426 -0.2273 -1.0559 39 1 8.4771 -2.6322 -0.6341 40 1 7.6149 -3.0508 -2.1340 41 1 9.2505 -1.7264 -3.4446 42 1 10.1132 -1.3074 -1.9451 43 1 12.7908 -2.3331 -4.2564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588146974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:00 Heat of formation + Delta-G solvation = -96.241976 kcal Electronic energy + Delta-G solvation = -22166.576227 eV Core-core repulsion = 18789.246901 eV Total energy + Delta-G solvation = -3377.329326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.83762 -40.41116 -38.53723 -36.72331 -35.94328 -34.62994 -32.70154 -31.93815 -30.55075 -28.74513 -27.52624 -26.78551 -24.79562 -23.40856 -22.21602 -21.72049 -21.24227 -19.26496 -18.43520 -18.16580 -17.77986 -17.21361 -16.68726 -16.59160 -16.47007 -15.62110 -15.34907 -15.31527 -14.87777 -14.65923 -14.56276 -14.50610 -13.83556 -13.59590 -13.32982 -13.28205 -13.11253 -12.86289 -12.82881 -12.51458 -12.31886 -12.17996 -12.15984 -12.12510 -11.82447 -11.40729 -11.35504 -11.29684 -11.11921 -10.74321 -10.55662 -9.55003 -8.77299 -8.18812 -6.30845 0.23590 0.37459 1.40397 1.41388 1.54889 1.56296 2.01831 2.32336 2.42056 2.74968 3.14002 3.67750 3.85873 3.94977 4.00081 4.13336 4.15546 4.32297 4.41749 4.43401 4.45686 4.62898 4.66752 4.71414 4.77501 4.81628 4.82724 4.87037 4.89351 5.05189 5.17922 5.19494 5.26341 5.33067 5.36463 5.46249 5.57144 5.67206 5.78337 5.83161 5.88377 6.25482 6.37626 6.43290 6.87904 7.13475 7.38801 8.93743 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.002464 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.966948 B =11358.979208 C =12263.070273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.090 3.910 4 C -0.186 4.186 5 C -0.095 4.095 6 C -0.117 4.117 7 C -0.108 4.108 8 C -0.110 4.110 9 C 0.096 3.904 10 N -0.657 5.657 11 C 0.511 3.489 12 O -0.564 6.564 13 C -0.124 4.124 14 C -0.095 4.095 15 C -0.096 4.096 16 C 0.018 3.982 17 C -0.540 4.540 18 H 0.066 0.934 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.257 1.257 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.122 0.878 34 H 0.425 0.575 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.060 0.940 41 H -0.016 1.016 42 H -0.015 1.015 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.480 8.648 12.272 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.043 3.957 4 C -0.205 4.205 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.165 4.165 8 C -0.131 4.131 9 C 0.001 3.999 10 N -0.303 5.303 11 C 0.301 3.699 12 O -0.442 6.442 13 C -0.164 4.164 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.019 4.019 17 C -0.578 4.578 18 H 0.084 0.916 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.794 3.206 22 H -0.181 1.181 23 H -0.205 1.205 24 H -0.204 1.204 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.088 0.912 28 H 0.179 0.821 29 H 0.173 0.827 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.264 0.736 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.003 0.997 42 H 0.004 0.996 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.937 9.154 11.792 31.675 hybrid contribution 0.727 -0.684 -0.290 1.040 sum -27.209 8.470 11.502 30.731 Atomic orbital electron populations 1.23348 0.76134 1.05598 1.02350 1.86005 1.23631 1.25983 1.89042 1.18857 0.89992 0.86115 1.00746 1.21395 1.01223 0.91082 1.06756 1.21165 0.93325 0.98322 0.98544 1.20047 0.94375 0.95486 1.01855 1.20755 1.00454 0.92606 1.02653 1.21079 1.00554 0.90817 1.00611 1.17333 0.87854 0.87384 1.07298 1.43322 1.20631 1.14306 1.52065 1.21451 0.80699 0.91506 0.76280 1.90685 1.68764 1.37601 1.47187 1.21677 0.96097 0.93987 1.04620 1.21252 0.95070 0.97710 0.99331 1.21447 0.95739 0.96057 1.00066 1.19060 0.93333 0.95481 0.94000 1.21785 1.05643 0.96985 1.33395 0.91580 1.26099 0.98982 1.00303 0.95087 1.70138 1.21180 1.30149 1.36439 0.85330 0.78210 0.79098 0.77974 1.18093 1.20480 1.20437 0.91920 0.86442 0.91201 0.82147 0.82705 0.91231 0.89262 0.92213 0.86055 0.73617 0.85857 0.86204 0.93826 0.93512 0.91924 0.92095 0.99729 0.99624 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -5.88 10.05 -93.35 -0.94 -6.82 16 3 C 0.09 1.87 6.70 22.60 0.15 2.02 16 4 C -0.19 -2.99 9.04 22.35 0.20 -2.79 16 5 C -0.10 -1.57 9.69 22.28 0.22 -1.35 16 6 C -0.12 -2.50 5.88 -19.87 -0.12 -2.62 16 7 C -0.11 -1.83 10.01 71.24 0.71 -1.12 16 8 C -0.11 -3.01 8.35 22.38 0.19 -2.83 16 9 C 0.10 2.46 6.32 38.19 0.24 2.70 16 10 N -0.66 -15.72 5.19 -303.13 -1.57 -17.29 16 11 C 0.51 15.04 7.68 87.66 0.67 15.71 16 12 O -0.56 -21.58 13.40 -3.08 -0.04 -21.62 16 13 C -0.12 -3.21 5.70 29.85 0.17 -3.04 16 14 C -0.10 -3.51 4.50 30.59 0.14 -3.37 16 15 C -0.10 -3.95 5.15 30.60 0.16 -3.80 16 16 C 0.02 1.02 4.97 29.85 0.15 1.17 16 17 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 18 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 19 C -0.01 -0.46 5.46 84.66 0.46 0.01 16 20 N -0.94 -59.60 13.29 21.45 0.28 -59.32 16 21 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 26 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.40 7.66 -2.39 -0.02 0.39 16 28 H 0.16 1.50 6.30 -2.91 -0.02 1.48 16 29 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.03 8.09 -2.39 -0.02 1.01 16 32 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 33 H 0.12 3.90 6.20 -2.91 -0.02 3.88 16 34 H 0.43 7.50 8.57 -92.71 -0.79 6.71 16 35 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.04 1.76 8.10 -2.38 -0.02 1.74 16 38 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 41 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 42 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 43 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -78.31 359.17 4.65 -73.66 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.20 Total: 13.56 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: 4.69 Total: -29.42 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -1.29 Total: -76.61 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.98 Total: -28.44 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -78.31 4.65 -73.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588146974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.583 kcal (2) G-P(sol) polarization free energy of solvation -78.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds