Wall clock time and date at job start Tue Mar 31 2020 06:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35970 * 117.00344 * 2 1 4 4 C 1.38742 * 119.97933 * 0.02562 * 3 2 1 5 5 C 1.38071 * 120.01215 * 179.97438 * 4 3 2 6 6 C 1.38864 * 119.98547 * 0.02562 * 5 4 3 7 7 N 1.40113 * 120.01642 * 180.25731 * 6 5 4 8 8 C 1.34777 * 119.99595 * 325.26291 * 7 6 5 9 9 O 1.21296 * 120.00342 * 4.51327 * 8 7 6 10 10 C 1.50696 * 119.99955 * 184.50688 * 8 7 6 11 11 C 1.53008 * 109.47214 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47166 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47128 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46991 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99974 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99536 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00428 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99615 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47265 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47176 * 119.99618 * 18 16 14 21 21 H 1.48500 * 109.47352 * 239.99920 * 18 16 14 22 22 C 1.38829 * 119.97129 * 359.97438 * 6 5 4 23 23 C 1.50700 * 120.00912 * 180.02562 * 22 6 5 24 24 C 1.38109 * 119.98259 * 359.97438 * 22 6 5 25 25 H 1.09004 * 109.46942 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47071 * 300.00030 * 1 2 3 27 27 H 1.08999 * 109.46550 * 60.00254 * 1 2 3 28 28 H 1.07993 * 119.99667 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.00821 * 180.02562 * 5 4 3 30 30 H 0.96994 * 120.00470 * 145.27008 * 7 6 5 31 31 H 1.08998 * 109.47192 * 300.00053 * 10 8 7 32 32 H 1.08996 * 109.47552 * 60.00185 * 10 8 7 33 33 H 1.08998 * 109.46550 * 299.99792 * 11 10 8 34 34 H 1.08991 * 109.47239 * 59.99831 * 11 10 8 35 35 H 1.09000 * 109.46883 * 299.99809 * 12 11 10 36 36 H 1.09008 * 109.47173 * 59.99428 * 12 11 10 37 37 H 1.08998 * 109.46918 * 299.99957 * 13 12 11 38 38 H 1.09000 * 109.46717 * 60.00267 * 13 12 11 39 39 H 0.96999 * 120.00228 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.47119 * 89.99538 * 23 22 6 41 41 H 1.08992 * 109.47043 * 209.99830 * 23 22 6 42 42 H 1.08999 * 109.46707 * 329.99938 * 23 22 6 43 43 H 1.08004 * 119.99079 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2904 2.3748 0.0005 5 6 1.9166 3.6054 0.0011 6 6 3.3033 3.6784 0.0005 7 7 3.9394 4.9268 0.0065 8 6 3.3903 5.9660 -0.6529 9 8 2.3059 5.8436 -1.1825 10 6 4.1233 7.2803 -0.7321 11 6 3.2873 8.2834 -1.5296 12 6 4.0318 9.6176 -1.6106 13 6 3.1961 10.6204 -2.4085 14 6 3.9293 11.9347 -2.4877 15 1 4.8949 12.0437 -2.0164 16 6 3.3672 12.9980 -3.1619 17 7 2.1911 12.8655 -3.7353 18 14 4.2756 14.6273 -3.2594 19 1 5.5681 14.5175 -2.5365 20 1 4.5310 14.9672 -4.6823 21 1 3.4496 15.6927 -2.6366 22 6 4.0591 2.5139 0.0000 23 6 5.5641 2.5922 0.0000 24 6 3.4315 1.2837 0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 0.2120 2.3179 0.0014 29 1 1.3280 4.5109 0.0019 30 1 4.7750 5.0431 0.4851 31 1 4.2893 7.6650 0.2741 32 1 5.0830 7.1319 -1.2272 33 1 3.1210 7.8989 -2.5359 34 1 2.3279 8.4318 -1.0342 35 1 4.1985 10.0022 -0.6044 36 1 4.9912 9.4688 -2.1062 37 1 3.0298 10.2355 -3.4146 38 1 2.2367 10.7692 -1.9131 39 1 1.7959 13.6134 -4.2099 40 1 5.9270 2.6107 1.0277 41 1 5.9731 1.7225 -0.5142 42 1 5.8806 3.5001 -0.5135 43 1 4.0193 0.3777 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588155991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:03 Heat of formation + Delta-G solvation = -73.924810 kcal Electronic energy + Delta-G solvation = -21987.685902 eV Core-core repulsion = 18611.324321 eV Total energy + Delta-G solvation = -3376.361581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.89425 -39.69676 -37.80498 -34.97718 -34.48196 -32.78206 -32.62369 -30.37840 -29.39203 -27.46341 -26.88229 -25.57931 -23.40822 -22.20920 -21.22801 -20.27588 -20.00594 -18.04906 -17.70655 -17.03721 -16.27609 -16.14654 -15.95747 -15.60626 -14.59703 -14.46345 -14.43873 -14.13233 -13.97385 -13.79211 -13.42211 -13.03340 -12.63976 -12.52538 -12.29806 -12.28770 -12.10101 -11.73307 -11.61953 -11.48756 -11.13590 -11.00511 -10.56768 -10.49018 -10.43644 -10.08754 -9.77990 -9.62504 -9.24478 -9.01073 -8.97937 -8.31397 -7.87736 -5.95884 -3.98368 1.05175 1.19821 2.59003 2.93978 3.06131 3.32748 3.39983 3.43840 3.54977 4.48291 4.51257 4.60452 4.74293 4.78594 4.86174 4.87791 5.06132 5.15710 5.17211 5.23716 5.27648 5.30988 5.39610 5.42502 5.59173 5.71714 5.80239 5.89886 6.10399 6.18214 6.19903 6.26712 6.27501 6.51307 6.66054 6.81392 6.99292 7.16180 7.18267 7.29324 7.73658 7.89053 8.05366 8.11076 8.47193 9.09579 9.65386 11.15466 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034894 B = 0.002241 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.244623 B =12492.543608 C =13158.952703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.111 3.889 4 C -0.194 4.194 5 C -0.078 4.078 6 C 0.112 3.888 7 N -0.677 5.677 8 C 0.511 3.489 9 O -0.517 6.517 10 C -0.137 4.137 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.076 4.076 23 C -0.115 4.115 24 C -0.136 4.136 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.130 0.870 29 H 0.145 0.855 30 H 0.409 0.591 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.859 -26.328 11.009 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.066 3.934 4 C -0.213 4.213 5 C -0.098 4.098 6 C 0.018 3.982 7 N -0.323 5.323 8 C 0.300 3.700 9 O -0.392 6.392 10 C -0.177 4.177 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.078 4.078 23 C -0.172 4.172 24 C -0.156 4.156 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.148 0.852 29 H 0.162 0.838 30 H 0.245 0.755 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.046 -26.433 10.494 28.513 hybrid contribution 0.505 1.108 0.090 1.221 sum 2.551 -25.325 10.584 27.566 Atomic orbital electron populations 1.23048 0.78424 1.03798 1.01514 1.86049 1.21348 1.26947 1.89053 1.18960 0.92236 0.84131 0.98093 1.21154 1.00145 0.91779 1.08228 1.21151 0.93148 0.98351 0.97134 1.17525 0.91665 0.84554 1.04414 1.43671 1.27084 1.08480 1.53093 1.21330 0.86353 0.85664 0.76648 1.90695 1.20676 1.83006 1.44788 1.21819 1.00587 0.91682 1.03627 1.21469 0.98518 0.94442 0.99751 1.21651 0.98963 0.93753 1.00420 1.19103 0.95033 0.92625 0.95027 1.21318 1.04417 0.96562 1.33489 0.92685 1.25049 0.95002 0.98930 0.95666 1.69980 1.16313 1.31498 1.35659 0.86554 0.79863 0.83975 0.77696 1.19777 1.21052 1.21061 1.19466 0.96005 0.91049 1.01327 1.20754 0.90473 1.03395 1.02549 1.20021 0.91229 0.97425 1.06880 0.88330 0.92658 0.92556 0.85236 0.83776 0.75482 0.88802 0.88774 0.91709 0.91712 0.93419 0.93422 0.96579 0.96585 0.93092 0.90805 0.90880 0.91267 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.23 10.50 -19.65 -0.21 -3.44 16 3 C 0.11 1.22 6.69 -39.23 -0.26 0.96 16 4 C -0.19 -2.17 9.03 -39.46 -0.36 -2.53 16 5 C -0.08 -0.99 8.70 -39.41 -0.34 -1.34 16 6 C 0.11 1.31 6.29 -83.62 -0.53 0.79 16 7 N -0.68 -7.10 4.75 -9.83 -0.05 -7.15 16 8 C 0.51 6.91 7.68 -10.99 -0.08 6.83 16 9 O -0.52 -9.03 13.40 5.54 0.07 -8.95 16 10 C -0.14 -1.72 5.70 -27.88 -0.16 -1.88 16 11 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 14 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 18 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 22 C -0.08 -0.75 5.89 -104.45 -0.62 -1.37 16 23 C -0.12 -0.77 9.47 36.01 0.34 -0.43 16 24 C -0.14 -1.38 9.63 -39.46 -0.38 -1.76 16 25 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.13 1.20 6.29 -52.49 -0.33 0.87 16 29 H 0.14 2.05 6.19 -52.49 -0.32 1.73 16 30 H 0.41 2.91 7.85 -40.82 -0.32 2.59 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 42 H 0.07 0.45 7.17 -51.93 -0.37 0.08 16 43 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -34.60 357.22 -8.03 -42.63 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.75 Total: -1.32 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -2.20 Total: -17.24 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.69 Total: -33.92 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.13 Total: -12.39 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.60 -8.03 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588155991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.298 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds