Wall clock time and date at job start Tue Mar 31 2020 06:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35970 * 117.00344 * 2 1 4 4 C 1.38742 * 119.97933 * 0.02562 * 3 2 1 5 5 C 1.38071 * 120.01215 * 179.97438 * 4 3 2 6 6 C 1.38864 * 119.98547 * 0.02562 * 5 4 3 7 7 N 1.40113 * 120.01642 * 180.25731 * 6 5 4 8 8 C 1.34777 * 119.99595 * 325.26291 * 7 6 5 9 9 O 1.21296 * 120.00342 * 4.51327 * 8 7 6 10 10 C 1.50696 * 119.99955 * 184.50688 * 8 7 6 11 11 C 1.53008 * 109.47214 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47166 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47128 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46991 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99974 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99536 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00428 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99615 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47265 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47176 * 119.99618 * 18 16 14 21 21 H 1.48500 * 109.47352 * 239.99920 * 18 16 14 22 22 C 1.38829 * 119.97129 * 359.97438 * 6 5 4 23 23 C 1.50700 * 120.00912 * 180.02562 * 22 6 5 24 24 C 1.38109 * 119.98259 * 359.97438 * 22 6 5 25 25 H 1.09004 * 109.46942 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47071 * 300.00030 * 1 2 3 27 27 H 1.08999 * 109.46550 * 60.00254 * 1 2 3 28 28 H 1.07993 * 119.99667 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.00821 * 180.02562 * 5 4 3 30 30 H 0.96994 * 120.00470 * 145.27008 * 7 6 5 31 31 H 1.08998 * 109.47192 * 300.00053 * 10 8 7 32 32 H 1.08996 * 109.47552 * 60.00185 * 10 8 7 33 33 H 1.08998 * 109.46550 * 299.99792 * 11 10 8 34 34 H 1.08991 * 109.47239 * 59.99831 * 11 10 8 35 35 H 1.09000 * 109.46883 * 299.99809 * 12 11 10 36 36 H 1.09008 * 109.47173 * 59.99428 * 12 11 10 37 37 H 1.08998 * 109.46918 * 299.99957 * 13 12 11 38 38 H 1.09000 * 109.46717 * 60.00267 * 13 12 11 39 39 H 0.96999 * 120.00228 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.47119 * 89.99538 * 23 22 6 41 41 H 1.08992 * 109.47043 * 209.99830 * 23 22 6 42 42 H 1.08999 * 109.46707 * 329.99938 * 23 22 6 43 43 H 1.08004 * 119.99079 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2904 2.3748 0.0005 5 6 1.9166 3.6054 0.0011 6 6 3.3033 3.6784 0.0005 7 7 3.9394 4.9268 0.0065 8 6 3.3903 5.9660 -0.6529 9 8 2.3059 5.8436 -1.1825 10 6 4.1233 7.2803 -0.7321 11 6 3.2873 8.2834 -1.5296 12 6 4.0318 9.6176 -1.6106 13 6 3.1961 10.6204 -2.4085 14 6 3.9293 11.9347 -2.4877 15 1 4.8949 12.0437 -2.0164 16 6 3.3672 12.9980 -3.1619 17 7 2.1911 12.8655 -3.7353 18 14 4.2756 14.6273 -3.2594 19 1 5.5681 14.5175 -2.5365 20 1 4.5310 14.9672 -4.6823 21 1 3.4496 15.6927 -2.6366 22 6 4.0591 2.5139 0.0000 23 6 5.5641 2.5922 0.0000 24 6 3.4315 1.2837 0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 0.2120 2.3179 0.0014 29 1 1.3280 4.5109 0.0019 30 1 4.7750 5.0431 0.4851 31 1 4.2893 7.6650 0.2741 32 1 5.0830 7.1319 -1.2272 33 1 3.1210 7.8989 -2.5359 34 1 2.3279 8.4318 -1.0342 35 1 4.1985 10.0022 -0.6044 36 1 4.9912 9.4688 -2.1062 37 1 3.0298 10.2355 -3.4146 38 1 2.2367 10.7692 -1.9131 39 1 1.7959 13.6134 -4.2099 40 1 5.9270 2.6107 1.0277 41 1 5.9731 1.7225 -0.5142 42 1 5.8806 3.5001 -0.5135 43 1 4.0193 0.3777 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588155991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:03 Heat of formation + Delta-G solvation = -95.363164 kcal Electronic energy + Delta-G solvation = -21988.615538 eV Core-core repulsion = 18611.324321 eV Total energy + Delta-G solvation = -3377.291218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78658 -40.58254 -38.65923 -36.64313 -35.43990 -34.61710 -33.50209 -31.77639 -30.47091 -28.39513 -27.48078 -27.19123 -24.70959 -23.53837 -22.09243 -21.71277 -21.26385 -18.85756 -18.55865 -18.38488 -17.98721 -17.19255 -16.68229 -16.64500 -16.49335 -15.66418 -15.37759 -15.15269 -14.90961 -14.59545 -14.51417 -14.20047 -13.87542 -13.67382 -13.59210 -13.27961 -13.10870 -12.85332 -12.84941 -12.74621 -12.31790 -12.26863 -12.15349 -12.14149 -11.89449 -11.37450 -11.34428 -11.14788 -10.94493 -10.70397 -10.55679 -9.80315 -8.72219 -8.18749 -6.30723 0.24095 0.32743 1.40609 1.41446 1.54925 1.58251 2.06107 2.36855 2.42054 2.72054 3.14101 3.69023 3.82949 3.86351 4.03380 4.09900 4.15363 4.28091 4.36483 4.37105 4.47091 4.57819 4.68901 4.69017 4.71970 4.83965 4.84205 4.88061 4.91996 5.01282 5.19331 5.24455 5.33596 5.34442 5.36871 5.40633 5.47294 5.57941 5.78918 5.81968 5.88851 6.25578 6.40623 6.44700 6.88288 7.16610 7.38959 8.93686 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034894 B = 0.002241 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.244623 B =12492.543608 C =13158.952703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.106 3.894 4 C -0.204 4.204 5 C -0.100 4.100 6 C 0.092 3.908 7 N -0.657 5.657 8 C 0.510 3.490 9 O -0.567 6.567 10 C -0.125 4.125 11 C -0.097 4.097 12 C -0.096 4.096 13 C 0.017 3.983 14 C -0.539 4.539 15 H 0.067 0.933 16 C -0.009 4.009 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.256 1.256 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.068 4.068 23 C -0.115 4.115 24 C -0.143 4.143 25 H 0.123 0.877 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.140 0.860 29 H 0.121 0.879 30 H 0.428 0.572 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.062 0.938 37 H -0.016 1.016 38 H -0.016 1.016 39 H 0.262 0.738 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 -27.109 12.281 30.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.060 3.940 4 C -0.223 4.223 5 C -0.120 4.120 6 C -0.002 4.002 7 N -0.304 5.304 8 C 0.300 3.700 9 O -0.445 6.445 10 C -0.164 4.164 11 C -0.135 4.135 12 C -0.133 4.133 13 C -0.020 4.020 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.794 3.206 19 H -0.180 1.180 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.070 4.070 23 C -0.171 4.171 24 C -0.162 4.162 25 H 0.141 0.859 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.157 0.843 29 H 0.139 0.861 30 H 0.267 0.733 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.951 -27.243 11.803 30.100 hybrid contribution -0.465 1.249 -0.308 1.368 sum 4.485 -25.994 11.495 28.774 Atomic orbital electron populations 1.23309 0.76791 1.05565 1.01899 1.86037 1.23115 1.26481 1.88874 1.19158 0.92854 0.84262 0.97709 1.21258 1.00885 0.91582 1.08571 1.21110 0.94029 0.98067 0.98829 1.17690 0.91510 0.85472 1.05530 1.43406 1.27325 1.07496 1.52171 1.21476 0.85743 0.86495 0.76293 1.90695 1.22845 1.83816 1.47132 1.21690 1.00301 0.89724 1.04690 1.21255 0.98323 0.94523 0.99383 1.21446 0.98459 0.93332 1.00066 1.19071 0.94749 0.94136 0.94022 1.21793 1.04988 0.97497 1.33454 0.91477 1.26108 0.95869 1.03472 0.95136 1.70137 1.18227 1.32956 1.36581 0.85330 0.78935 0.78394 0.77948 1.18004 1.20535 1.20543 1.19794 0.97731 0.90080 0.99429 1.20862 0.87873 1.04239 1.04141 1.20376 0.91179 0.98370 1.06286 0.85916 0.91965 0.92512 0.84271 0.86132 0.73264 0.85742 0.85765 0.93890 0.93750 0.91902 0.91943 0.99773 0.99738 0.92886 0.88693 0.89673 0.90774 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -6.37 10.50 -93.21 -0.98 -7.35 16 3 C 0.11 2.26 6.69 22.50 0.15 2.41 16 4 C -0.20 -4.68 9.03 22.35 0.20 -4.48 16 5 C -0.10 -2.66 8.70 22.38 0.19 -2.47 16 6 C 0.09 2.09 6.29 38.11 0.24 2.33 16 7 N -0.66 -12.79 4.75 -303.39 -1.44 -14.23 16 8 C 0.51 13.50 7.68 87.66 0.67 14.17 16 9 O -0.57 -20.62 13.40 -3.08 -0.04 -20.67 16 10 C -0.12 -2.87 5.70 29.85 0.17 -2.70 16 11 C -0.10 -3.39 4.50 30.60 0.14 -3.25 16 12 C -0.10 -3.82 5.15 30.59 0.16 -3.66 16 13 C 0.02 0.95 4.97 29.85 0.15 1.10 16 14 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 15 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 16 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 17 N -0.94 -59.17 13.29 21.45 0.28 -58.88 16 18 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 C -0.07 -1.22 5.89 -19.75 -0.12 -1.33 16 23 C -0.11 -1.16 9.47 71.24 0.67 -0.49 16 24 C -0.14 -2.67 9.63 22.35 0.22 -2.45 16 25 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 27 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 28 H 0.14 2.71 6.29 -2.91 -0.02 2.69 16 29 H 0.12 3.74 6.19 -2.91 -0.02 3.72 16 30 H 0.43 4.81 7.85 -92.71 -0.73 4.08 16 31 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 37 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 42 H 0.07 0.70 7.17 -2.39 -0.02 0.68 16 43 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -78.41 357.22 4.78 -73.63 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.27 Total: 11.15 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 4.65 Total: -30.47 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -1.16 Total: -73.11 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -1.02 Total: -28.01 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -78.41 4.78 -73.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588155991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.733 kcal (2) G-P(sol) polarization free energy of solvation -78.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds