Wall clock time and date at job start Tue Mar 31 2020 07:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38213 * 119.95168 * 2 1 4 4 C 1.38127 * 120.11905 * 179.97438 * 3 2 1 5 5 C 1.38929 * 120.04323 * 0.03722 * 4 3 2 6 6 N 1.39917 * 120.04405 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00211 * 335.15541 * 6 5 4 8 8 O 1.21293 * 120.00074 * 354.47864 * 7 6 5 9 9 C 1.50699 * 120.00423 * 174.47389 * 7 6 5 10 10 C 1.52995 * 109.47438 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47216 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47308 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00407 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00152 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00085 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99678 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47308 * 89.99894 * 17 15 13 19 19 H 1.48500 * 109.46778 * 209.99822 * 17 15 13 20 20 H 1.48505 * 109.47132 * 329.99478 * 17 15 13 21 21 C 1.38756 * 119.91445 * 0.25889 * 5 4 3 22 22 C 1.50697 * 120.06006 * 179.72029 * 21 5 4 23 23 C 1.38627 * 119.87265 * 359.44805 * 21 5 4 24 24 O 1.35899 * 120.01957 * 180.25334 * 23 21 5 25 25 H 1.08994 * 109.47489 * 90.00358 * 1 2 3 26 26 H 1.09007 * 109.47201 * 210.00295 * 1 2 3 27 27 H 1.09002 * 109.47604 * 329.99727 * 1 2 3 28 28 H 1.07998 * 119.94007 * 359.97438 * 3 2 1 29 29 H 1.08008 * 119.97756 * 180.02562 * 4 3 2 30 30 H 0.96993 * 120.00338 * 155.42721 * 6 5 4 31 31 H 1.09001 * 109.47379 * 300.00237 * 9 7 6 32 32 H 1.09000 * 109.46640 * 60.00225 * 9 7 6 33 33 H 1.09001 * 109.47050 * 300.00463 * 10 9 7 34 34 H 1.09006 * 109.46975 * 60.00023 * 10 9 7 35 35 H 1.09001 * 109.47086 * 299.99947 * 11 10 9 36 36 H 1.08992 * 109.47342 * 59.99771 * 11 10 9 37 37 H 1.09001 * 109.46680 * 299.99800 * 12 11 10 38 38 H 1.08998 * 109.47403 * 59.98979 * 12 11 10 39 39 H 0.97009 * 119.99458 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.47277 * 90.00425 * 22 21 5 41 41 H 1.09008 * 109.46872 * 209.99858 * 22 21 5 42 42 H 1.08997 * 109.47003 * 329.99494 * 22 21 5 43 43 H 0.96701 * 114.00024 * 270.29531 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1975 0.0000 4 6 3.5783 1.2016 0.0005 5 6 4.2774 0.0010 0.0003 6 7 5.6765 0.0050 0.0003 7 6 6.3474 1.0663 -0.4899 8 8 5.7426 1.9732 -1.0218 9 6 7.8490 1.1262 -0.3771 10 6 8.3564 2.4246 -1.0077 11 6 9.8809 2.4851 -0.8937 12 6 10.3883 3.7838 -1.5237 13 6 11.8898 3.8437 -1.4109 14 1 12.4284 3.0365 -0.9370 15 6 12.5762 4.9291 -1.9129 16 7 13.8865 4.9815 -1.8140 17 14 11.6446 6.3257 -2.7321 18 1 11.2796 7.3422 -1.7129 19 1 12.5028 6.9513 -3.7700 20 1 10.4108 5.7937 -3.3647 21 6 3.5862 -1.2022 -0.0059 22 6 4.3412 -2.5064 -0.0126 23 6 2.2000 -1.2022 -0.0003 24 8 1.5201 -2.3789 -0.0011 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 1.6553 2.1318 -0.0004 29 1 4.1152 2.1387 0.0010 30 1 6.1638 -0.7575 0.3494 31 1 8.1359 1.0959 0.6740 32 1 8.2866 0.2746 -0.8979 33 1 8.0694 2.4544 -2.0588 34 1 7.9186 3.2765 -0.4873 35 1 10.1682 2.4551 0.1573 36 1 10.3182 1.6332 -1.4143 37 1 10.1010 3.8142 -2.5748 38 1 9.9508 4.6355 -1.0028 39 1 14.3693 5.7454 -2.1668 40 1 4.5231 -2.8261 1.0134 41 1 3.7529 -3.2641 -0.5304 42 1 5.2934 -2.3723 -0.5257 43 1 1.3236 -2.7190 -0.8848 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589841212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:59 Heat of formation + Delta-G solvation = -80.828267 kcal Electronic energy + Delta-G solvation = -22180.040111 eV Core-core repulsion = 18803.379173 eV Total energy + Delta-G solvation = -3376.660937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.05018 -39.58564 -37.06265 -35.35525 -35.04147 -32.87008 -32.53834 -31.18505 -30.12669 -27.32308 -26.97670 -25.48100 -23.02265 -22.08113 -20.98099 -20.40627 -20.07258 -18.70853 -17.68533 -16.72265 -16.47512 -16.16146 -15.84031 -15.16195 -15.11255 -14.37204 -14.21060 -14.02888 -13.80772 -13.61975 -13.49628 -13.03911 -12.68513 -12.63486 -12.34408 -12.32108 -12.18760 -12.06134 -11.78906 -11.64710 -11.15506 -10.85218 -10.78688 -10.59025 -10.48708 -9.97911 -9.84232 -9.67451 -9.47409 -9.14203 -8.80828 -8.50847 -8.13105 -6.01950 -3.99582 0.95145 1.01310 2.44958 2.79056 3.34121 3.38979 3.41285 3.46844 3.96599 4.42014 4.48645 4.55536 4.59025 4.77487 5.00022 5.09585 5.17716 5.18912 5.21666 5.27071 5.31322 5.32793 5.40016 5.52652 5.65523 5.71827 5.77553 5.96087 6.00701 6.06604 6.09206 6.20343 6.31054 6.36051 6.62875 6.67931 6.76740 6.95375 7.14739 7.33328 7.35253 7.48069 7.82955 7.94505 8.56550 9.02916 9.61292 11.11471 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035314 B = 0.002415 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.691360 B =11593.204976 C =12247.170596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.131 4.131 3 C -0.089 4.089 4 C -0.133 4.133 5 C 0.164 3.836 6 N -0.675 5.675 7 C 0.512 3.488 8 O -0.513 6.513 9 C -0.138 4.138 10 C -0.107 4.107 11 C -0.103 4.103 12 C -0.015 4.015 13 C -0.520 4.520 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.144 4.144 22 C -0.107 4.107 23 C 0.120 3.880 24 O -0.492 6.492 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.129 0.871 29 H 0.150 0.850 30 H 0.411 0.589 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.241 -15.946 4.463 31.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.133 4.133 3 C -0.108 4.108 4 C -0.153 4.153 5 C 0.068 3.932 6 N -0.320 5.320 7 C 0.301 3.699 8 O -0.387 6.387 9 C -0.178 4.178 10 C -0.145 4.145 11 C -0.140 4.140 12 C -0.053 4.053 13 C -0.558 4.558 14 H 0.089 0.911 15 C -0.137 4.137 16 N -0.545 5.545 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.147 4.147 22 C -0.164 4.164 23 C 0.075 3.925 24 O -0.302 6.302 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.147 0.853 29 H 0.167 0.833 30 H 0.248 0.752 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -26.392 -15.094 4.648 30.756 hybrid contribution -0.095 0.303 -0.759 0.823 sum -26.487 -14.791 3.889 30.585 Atomic orbital electron populations 1.20637 0.90744 1.03005 1.02078 1.20160 0.96700 0.92444 1.03979 1.20851 0.93564 0.97247 0.99149 1.21471 0.94142 0.98303 1.01397 1.17469 0.82849 0.93167 0.99690 1.43765 1.04498 1.21577 1.62151 1.21346 0.91159 0.80960 0.76417 1.90674 1.69979 1.37075 1.40953 1.21821 0.89196 1.02630 1.04155 1.21507 0.97475 0.94482 1.01029 1.21476 0.91560 1.00168 1.00817 1.19575 0.96925 0.93008 0.95771 1.21172 0.90084 1.06243 1.38283 0.91105 1.25050 0.94750 0.98235 0.95616 1.69924 1.06656 1.30879 1.47001 0.86771 0.80272 0.82572 0.79653 1.20314 1.21452 1.18912 1.19843 0.93364 0.94572 1.06956 1.20570 0.99485 0.93794 1.02524 1.17716 0.88387 0.84874 1.01543 1.84794 1.76000 1.36162 1.33206 0.91578 0.91086 0.91580 0.85340 0.83290 0.75230 0.88434 0.88598 0.91650 0.91642 0.92784 0.92768 0.96615 0.97044 0.92806 0.90987 0.91024 0.91812 0.75808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 9.79 36.00 0.35 -0.42 16 2 C -0.13 -1.26 5.89 -104.44 -0.62 -1.88 16 3 C -0.09 -0.93 9.69 -39.63 -0.38 -1.32 16 4 C -0.13 -1.63 8.72 -39.37 -0.34 -1.97 16 5 C 0.16 1.85 6.41 -83.72 -0.54 1.31 16 6 N -0.68 -6.77 4.97 -9.88 -0.05 -6.82 16 7 C 0.51 6.45 7.63 -10.99 -0.08 6.37 16 8 O -0.51 -8.30 13.14 5.55 0.07 -8.23 16 9 C -0.14 -1.60 5.70 -27.89 -0.16 -1.76 16 10 C -0.11 -1.70 4.50 -26.74 -0.12 -1.82 16 11 C -0.10 -1.96 5.15 -26.73 -0.14 -2.09 16 12 C -0.02 -0.37 4.04 -27.88 -0.11 -0.49 16 13 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 14 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 17 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 21 C -0.14 -1.41 5.91 -104.29 -0.62 -2.03 16 22 C -0.11 -0.76 9.22 36.00 0.33 -0.43 16 23 C 0.12 1.15 6.64 -39.24 -0.26 0.89 16 24 O -0.49 -3.80 11.59 -19.42 -0.23 -4.03 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.50 7.53 -51.92 -0.39 0.11 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.15 2.05 5.79 -52.48 -0.30 1.75 16 30 H 0.41 2.84 7.40 -40.82 -0.30 2.54 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 34 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 38 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.44 7.54 -51.92 -0.39 0.05 16 42 H 0.06 0.40 6.99 -51.93 -0.36 0.04 16 43 H 0.39 1.35 9.06 45.56 0.41 1.76 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -34.91 352.88 -7.81 -42.72 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.91 Total: 0.10 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -3.12 Total: -19.15 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.72 Total: -34.28 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.15 Total: -12.26 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.91 -7.81 -42.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589841212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.110 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds