Wall clock time and date at job start Tue Mar 31 2020 07:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38213 * 119.95168 * 2 1 4 4 C 1.38127 * 120.11905 * 179.97438 * 3 2 1 5 5 C 1.38929 * 120.04323 * 0.03722 * 4 3 2 6 6 N 1.39917 * 120.04405 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00211 * 335.15541 * 6 5 4 8 8 O 1.21293 * 120.00074 * 354.47864 * 7 6 5 9 9 C 1.50699 * 120.00423 * 174.47389 * 7 6 5 10 10 C 1.52995 * 109.47438 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47216 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47308 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00407 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00152 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00085 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99678 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47308 * 89.99894 * 17 15 13 19 19 H 1.48500 * 109.46778 * 209.99822 * 17 15 13 20 20 H 1.48505 * 109.47132 * 329.99478 * 17 15 13 21 21 C 1.38756 * 119.91445 * 0.25889 * 5 4 3 22 22 C 1.50697 * 120.06006 * 179.72029 * 21 5 4 23 23 C 1.38627 * 119.87265 * 359.44805 * 21 5 4 24 24 O 1.35899 * 120.01957 * 180.25334 * 23 21 5 25 25 H 1.08994 * 109.47489 * 90.00358 * 1 2 3 26 26 H 1.09007 * 109.47201 * 210.00295 * 1 2 3 27 27 H 1.09002 * 109.47604 * 329.99727 * 1 2 3 28 28 H 1.07998 * 119.94007 * 359.97438 * 3 2 1 29 29 H 1.08008 * 119.97756 * 180.02562 * 4 3 2 30 30 H 0.96993 * 120.00338 * 155.42721 * 6 5 4 31 31 H 1.09001 * 109.47379 * 300.00237 * 9 7 6 32 32 H 1.09000 * 109.46640 * 60.00225 * 9 7 6 33 33 H 1.09001 * 109.47050 * 300.00463 * 10 9 7 34 34 H 1.09006 * 109.46975 * 60.00023 * 10 9 7 35 35 H 1.09001 * 109.47086 * 299.99947 * 11 10 9 36 36 H 1.08992 * 109.47342 * 59.99771 * 11 10 9 37 37 H 1.09001 * 109.46680 * 299.99800 * 12 11 10 38 38 H 1.08998 * 109.47403 * 59.98979 * 12 11 10 39 39 H 0.97009 * 119.99458 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.47277 * 90.00425 * 22 21 5 41 41 H 1.09008 * 109.46872 * 209.99858 * 22 21 5 42 42 H 1.08997 * 109.47003 * 329.99494 * 22 21 5 43 43 H 0.96701 * 114.00024 * 270.29531 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1975 0.0000 4 6 3.5783 1.2016 0.0005 5 6 4.2774 0.0010 0.0003 6 7 5.6765 0.0050 0.0003 7 6 6.3474 1.0663 -0.4899 8 8 5.7426 1.9732 -1.0218 9 6 7.8490 1.1262 -0.3771 10 6 8.3564 2.4246 -1.0077 11 6 9.8809 2.4851 -0.8937 12 6 10.3883 3.7838 -1.5237 13 6 11.8898 3.8437 -1.4109 14 1 12.4284 3.0365 -0.9370 15 6 12.5762 4.9291 -1.9129 16 7 13.8865 4.9815 -1.8140 17 14 11.6446 6.3257 -2.7321 18 1 11.2796 7.3422 -1.7129 19 1 12.5028 6.9513 -3.7700 20 1 10.4108 5.7937 -3.3647 21 6 3.5862 -1.2022 -0.0059 22 6 4.3412 -2.5064 -0.0126 23 6 2.2000 -1.2022 -0.0003 24 8 1.5201 -2.3789 -0.0011 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 1.6553 2.1318 -0.0004 29 1 4.1152 2.1387 0.0010 30 1 6.1638 -0.7575 0.3494 31 1 8.1359 1.0959 0.6740 32 1 8.2866 0.2746 -0.8979 33 1 8.0694 2.4544 -2.0588 34 1 7.9186 3.2765 -0.4873 35 1 10.1682 2.4551 0.1573 36 1 10.3182 1.6332 -1.4143 37 1 10.1010 3.8142 -2.5748 38 1 9.9508 4.6355 -1.0028 39 1 14.3693 5.7454 -2.1668 40 1 4.5231 -2.8261 1.0134 41 1 3.7529 -3.2641 -0.5304 42 1 5.2934 -2.3723 -0.5257 43 1 1.3236 -2.7190 -0.8848 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589841212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:59 Heat of formation + Delta-G solvation = -104.168981 kcal Electronic energy + Delta-G solvation = -22181.052240 eV Core-core repulsion = 18803.379173 eV Total energy + Delta-G solvation = -3377.673067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.87942 -40.40642 -37.82149 -36.67244 -36.05667 -34.62637 -33.52478 -32.15744 -31.49032 -28.23103 -27.93243 -26.68259 -24.20015 -23.23586 -21.89817 -21.61229 -21.32106 -19.44928 -18.84240 -18.54120 -17.33606 -17.12357 -16.67880 -16.35057 -16.07673 -15.86856 -15.41290 -15.15581 -14.72465 -14.53160 -14.27889 -14.07415 -13.90814 -13.74876 -13.61067 -13.50921 -13.07592 -12.89027 -12.84675 -12.76914 -12.44120 -12.30468 -12.08456 -11.75739 -11.51097 -11.50175 -11.35134 -11.29596 -11.24335 -10.76066 -10.75199 -9.54194 -8.91494 -8.29668 -6.32606 0.16721 0.26504 1.34773 1.36252 1.48893 1.53874 1.95740 2.35757 2.63837 3.05796 3.33236 3.63030 3.81787 3.92553 3.98235 4.05697 4.14110 4.32819 4.44209 4.60447 4.63391 4.64311 4.72849 4.75291 4.77806 4.81538 4.83722 4.87964 5.07186 5.13514 5.18779 5.22188 5.28051 5.30621 5.36203 5.45847 5.56551 5.60832 5.66026 5.68944 5.93050 6.29545 6.37247 6.75601 6.83582 7.06977 7.32189 8.86826 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035314 B = 0.002415 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.691360 B =11593.204976 C =12247.170596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.137 4.137 3 C -0.098 4.098 4 C -0.157 4.157 5 C 0.145 3.855 6 N -0.659 5.659 7 C 0.513 3.487 8 O -0.555 6.555 9 C -0.129 4.129 10 C -0.098 4.098 11 C -0.094 4.094 12 C -0.018 4.018 13 C -0.530 4.530 14 H 0.037 0.963 15 C 0.002 3.998 16 N -0.950 5.950 17 Si 0.948 3.052 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.252 1.252 21 C -0.146 4.146 22 C -0.107 4.107 23 C 0.118 3.882 24 O -0.494 6.494 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.140 0.860 29 H 0.127 0.873 30 H 0.427 0.573 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.014 0.986 38 H 0.013 0.987 39 H 0.266 0.734 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.354 -17.329 4.435 33.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.138 4.138 3 C -0.117 4.117 4 C -0.177 4.177 5 C 0.050 3.950 6 N -0.305 5.305 7 C 0.303 3.697 8 O -0.433 6.433 9 C -0.168 4.168 10 C -0.136 4.136 11 C -0.132 4.132 12 C -0.055 4.055 13 C -0.568 4.568 14 H 0.056 0.944 15 C -0.194 4.194 16 N -0.591 5.591 17 Si 0.771 3.229 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.175 1.175 21 C -0.149 4.149 22 C -0.163 4.163 23 C 0.073 3.927 24 O -0.307 6.307 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.145 0.855 30 H 0.266 0.734 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -28.519 -16.535 4.633 33.290 hybrid contribution 0.543 0.625 -0.712 1.092 sum -27.976 -15.910 3.921 32.421 Atomic orbital electron populations 1.20663 0.88974 1.03486 1.03000 1.20468 0.98073 0.92174 1.03127 1.21014 0.93098 0.98335 0.99248 1.21433 0.95041 0.98007 1.03246 1.17596 0.83233 0.93471 1.00714 1.43543 1.04261 1.21399 1.61276 1.21452 0.91455 0.80880 0.75939 1.90673 1.70769 1.38750 1.43111 1.21719 0.88502 1.01053 1.05559 1.21295 0.94939 0.96690 1.00710 1.21334 0.93707 0.97576 1.00534 1.19581 0.93860 0.95891 0.96170 1.21547 0.92576 1.05210 1.37434 0.94441 1.26007 0.95628 1.01297 0.96493 1.70065 1.08472 1.32092 1.48515 0.85692 0.79235 0.79087 0.78847 1.19273 1.20815 1.17531 1.20116 0.93755 0.95076 1.05949 1.20646 0.99740 0.92570 1.03351 1.17842 0.88565 0.85482 1.00824 1.84745 1.75636 1.35285 1.34998 0.90342 0.90802 0.90894 0.84268 0.85529 0.73356 0.86042 0.85947 0.92809 0.92750 0.92371 0.92315 0.96783 0.96911 0.92547 0.90128 0.89919 0.90937 0.73483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 9.79 71.24 0.70 -0.59 16 2 C -0.14 -2.46 5.89 -19.75 -0.12 -2.57 16 3 C -0.10 -2.03 9.69 22.24 0.22 -1.82 16 4 C -0.16 -3.90 8.72 22.41 0.20 -3.71 16 5 C 0.15 3.15 6.41 38.14 0.24 3.40 16 6 N -0.66 -12.23 4.97 -303.55 -1.51 -13.74 16 7 C 0.51 12.38 7.63 87.66 0.67 13.05 16 8 O -0.56 -18.17 13.14 -3.07 -0.04 -18.21 16 9 C -0.13 -2.71 5.70 29.85 0.17 -2.53 16 10 C -0.10 -3.02 4.50 30.59 0.14 -2.88 16 11 C -0.09 -3.49 5.15 30.59 0.16 -3.33 16 12 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 13 C -0.53 -30.98 9.66 25.60 0.25 -30.73 16 14 H 0.04 2.37 7.99 -2.91 -0.02 2.34 16 15 C 0.00 0.14 5.47 84.66 0.46 0.60 16 16 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 17 Si 0.95 45.78 27.47 68.60 1.88 47.66 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 21 C -0.15 -2.60 5.91 -19.65 -0.12 -2.71 16 22 C -0.11 -1.22 9.22 71.24 0.66 -0.57 16 23 C 0.12 2.05 6.64 22.49 0.15 2.20 16 24 O -0.49 -6.34 11.59 -92.41 -1.07 -7.41 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.88 7.53 -2.38 -0.02 0.86 16 27 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 28 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 29 H 0.13 3.69 5.79 -2.91 -0.02 3.68 16 30 H 0.43 4.84 7.40 -92.71 -0.69 4.16 16 31 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 34 H 0.05 1.78 8.10 -2.38 -0.02 1.76 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 38 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 39 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.77 7.54 -2.38 -0.02 0.76 16 42 H 0.07 0.70 6.99 -2.39 -0.02 0.68 16 43 H 0.41 1.66 9.06 -74.06 -0.67 0.99 16 Total: -1.00 -76.98 352.88 3.07 -73.91 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -0.39 Total: 10.80 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 3.89 Total: -32.91 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -1.21 Total: -73.84 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -1.11 Total: -25.62 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.66 kcal Total: -76.98 3.07 -73.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589841212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.255 kcal (2) G-P(sol) polarization free energy of solvation -76.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds