Wall clock time and date at job start Tue Mar 31 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38134 * 120.03506 * 2 1 4 4 C 1.38265 * 120.06948 * 180.25153 * 3 2 1 5 5 C 1.38305 * 120.13982 * 359.49425 * 4 3 2 6 6 C 1.50702 * 119.96404 * 180.25276 * 5 4 3 7 7 O 1.42906 * 109.47250 * 89.99736 * 6 5 4 8 8 C 1.38088 * 120.07135 * 0.22461 * 5 4 3 9 9 C 1.38851 * 120.03666 * 179.72312 * 2 1 3 10 10 N 1.39924 * 120.06907 * 359.97438 * 9 2 1 11 11 C 1.34782 * 119.99828 * 145.31339 * 10 9 2 12 12 O 1.21287 * 120.00067 * 4.49555 * 11 10 9 13 13 C 1.50706 * 119.99601 * 184.49885 * 11 10 9 14 14 C 1.53004 * 109.46760 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47156 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47287 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47258 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00004 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99910 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00204 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46950 * 89.99930 * 21 19 17 23 23 H 1.48494 * 109.47331 * 210.00235 * 21 19 17 24 24 H 1.48505 * 109.47065 * 330.00265 * 21 19 17 25 25 H 1.08997 * 109.47351 * 270.27458 * 1 2 3 26 26 H 1.09000 * 109.47125 * 30.27807 * 1 2 3 27 27 H 1.09005 * 109.46884 * 150.27115 * 1 2 3 28 28 H 1.07999 * 119.96988 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.93327 * 179.76489 * 4 3 2 30 30 H 1.09003 * 109.47375 * 209.99526 * 6 5 4 31 31 H 1.08993 * 109.47221 * 330.00138 * 6 5 4 32 32 H 0.96694 * 114.00541 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.03966 * 179.97438 * 8 5 4 34 34 H 0.97001 * 119.99939 * 325.31170 * 10 9 2 35 35 H 1.08999 * 109.46882 * 299.99559 * 13 11 10 36 36 H 1.08994 * 109.47412 * 59.99762 * 13 11 10 37 37 H 1.08995 * 109.47044 * 300.00265 * 14 13 11 38 38 H 1.09002 * 109.47036 * 60.00052 * 14 13 11 39 39 H 1.09007 * 109.47194 * 300.00363 * 15 14 13 40 40 H 1.08999 * 109.47030 * 59.99388 * 15 14 13 41 41 H 1.08991 * 109.47254 * 300.00006 * 16 15 14 42 42 H 1.09002 * 109.46960 * 60.00142 * 16 15 14 43 43 H 0.97002 * 120.00249 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1967 -0.0053 5 6 4.2762 0.0011 0.0000 6 6 5.7832 0.0066 0.0000 7 8 6.2596 0.0144 1.3473 8 6 3.5909 -1.1978 0.0059 9 6 2.2020 -1.2020 0.0058 10 7 1.5046 -2.4151 0.0122 11 6 2.0006 -3.4810 -0.6469 12 8 3.0895 -3.4135 -1.1768 13 6 1.2021 -4.7567 -0.7254 14 6 1.9858 -5.8005 -1.5236 15 6 1.1755 -7.0958 -1.6029 16 6 1.9589 -8.1394 -2.4016 17 6 1.1609 -9.4156 -2.4791 18 1 0.1918 -9.4760 -2.0064 19 6 1.6677 -10.5055 -3.1545 20 7 2.8476 -10.4318 -3.7306 21 14 0.6784 -12.0871 -3.2512 22 1 -0.1881 -12.0560 -4.4568 23 1 1.6037 -13.2454 -3.3364 24 1 -0.1671 -12.2171 -2.0372 25 1 -0.3634 0.0049 1.0276 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3633 -0.8925 -0.5096 28 1 1.6584 2.1312 -0.0004 29 1 4.1193 2.1329 -0.0091 30 1 6.1499 -0.8843 -0.5098 31 1 6.1432 0.8956 -0.5177 32 1 7.2235 0.0179 1.4238 33 1 4.1343 -2.1311 0.0096 34 1 0.6642 -2.4889 0.4910 35 1 1.0171 -5.1321 0.2811 36 1 0.2511 -4.5602 -1.2203 37 1 2.1704 -5.4249 -2.5300 38 1 2.9370 -5.9972 -1.0290 39 1 0.9912 -7.4713 -0.5963 40 1 0.2240 -6.8995 -2.0971 41 1 2.1427 -7.7638 -3.4081 42 1 2.9105 -8.3358 -1.9076 43 1 3.2044 -11.1987 -4.2055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589842976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:57 Heat of formation + Delta-G solvation = -88.916259 kcal Electronic energy + Delta-G solvation = -22069.497905 eV Core-core repulsion = 18692.486247 eV Total energy + Delta-G solvation = -3377.011659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80774 -38.98330 -37.03186 -35.11038 -34.78079 -33.01956 -32.66453 -30.53207 -29.29101 -28.53417 -25.77925 -24.66130 -23.47590 -22.14102 -20.89922 -20.28231 -20.00643 -17.69942 -17.44839 -16.94687 -16.16604 -16.07096 -15.86767 -15.43584 -14.66085 -14.45706 -14.26282 -14.10254 -13.89207 -13.72436 -13.57006 -12.69291 -12.62303 -12.53624 -12.36676 -12.08991 -11.77184 -11.64874 -11.60533 -11.23993 -10.99696 -10.57529 -10.51452 -10.47536 -10.43569 -10.33632 -9.81980 -9.62739 -9.24522 -8.99835 -8.86970 -8.31048 -8.23824 -5.95766 -3.98369 1.00116 1.21689 2.56806 2.94707 3.33707 3.39791 3.42906 3.45458 4.21718 4.48337 4.54068 4.64538 4.71601 4.83107 4.88494 5.02717 5.14971 5.21720 5.25962 5.27957 5.29934 5.39669 5.42515 5.53075 5.66756 5.78150 5.87697 6.08732 6.10302 6.22746 6.25646 6.29436 6.44045 6.51877 6.80902 6.87035 6.98817 7.17752 7.26219 7.34139 7.73316 7.88950 8.05257 8.08021 8.47121 9.09341 9.65373 11.15583 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025101 B = 0.002451 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.220313 B =11421.015916 C =12315.519806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.110 4.110 3 C -0.107 4.107 4 C -0.115 4.115 5 C -0.083 4.083 6 C 0.118 3.882 7 O -0.568 6.568 8 C -0.097 4.097 9 C 0.146 3.854 10 N -0.679 5.679 11 C 0.512 3.488 12 O -0.515 6.515 13 C -0.137 4.137 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.380 0.620 33 H 0.142 0.858 34 H 0.410 0.590 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 26.006 9.980 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.112 4.112 3 C -0.126 4.126 4 C -0.134 4.134 5 C -0.084 4.084 6 C 0.040 3.960 7 O -0.374 6.374 8 C -0.117 4.117 9 C 0.051 3.949 10 N -0.325 5.325 11 C 0.301 3.699 12 O -0.389 6.389 13 C -0.177 4.177 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.227 0.773 33 H 0.160 0.840 34 H 0.246 0.754 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.803 25.854 9.583 27.584 hybrid contribution -0.323 -0.900 -0.057 0.958 sum -1.126 24.953 9.526 26.734 Atomic orbital electron populations 1.20744 0.90884 1.03210 1.02346 1.19742 0.96155 0.91887 1.03448 1.20782 0.93906 0.96908 1.00988 1.20964 0.94105 0.97374 1.00921 1.19463 0.94430 0.93001 1.01466 1.20973 0.90593 1.00673 0.83741 1.86554 1.26685 1.97735 1.26425 1.21214 0.92602 0.98940 0.98914 1.17579 0.91241 0.84983 1.01054 1.43710 1.26077 1.09609 1.53078 1.21358 0.86989 0.84968 0.76628 1.90696 1.20775 1.82784 1.44640 1.21826 1.00032 0.92172 1.03681 1.21473 0.98809 0.94188 0.99728 1.21648 0.98558 0.94128 1.00443 1.19093 0.95315 0.92316 0.95005 1.21279 1.03723 0.97363 1.33512 0.92750 1.25042 0.95027 0.98863 0.95642 1.69973 1.17267 1.30723 1.35518 0.86610 0.79912 0.83185 0.78372 1.20703 1.21246 1.19917 0.91059 0.91068 0.91523 0.85628 0.86038 0.92353 0.92720 0.77332 0.84019 0.75369 0.88745 0.88747 0.91691 0.91686 0.93405 0.93429 0.96591 0.96577 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.47 36.00 0.34 -0.46 16 2 C -0.11 -1.10 5.90 -104.44 -0.62 -1.71 16 3 C -0.11 -1.00 9.70 -39.61 -0.38 -1.38 16 4 C -0.11 -1.16 9.70 -39.55 -0.38 -1.54 16 5 C -0.08 -0.98 5.51 -104.65 -0.58 -1.56 16 6 C 0.12 1.14 7.17 36.01 0.26 1.40 16 7 O -0.57 -5.65 13.64 -35.23 -0.48 -6.13 16 8 C -0.10 -1.31 8.35 -39.39 -0.33 -1.64 16 9 C 0.15 1.77 6.29 -83.69 -0.53 1.24 16 10 N -0.68 -7.40 4.75 -9.86 -0.05 -7.45 16 11 C 0.51 7.05 7.68 -10.98 -0.08 6.97 16 12 O -0.52 -9.09 13.40 5.55 0.07 -9.01 16 13 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 14 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 15 C -0.11 -2.24 5.15 -26.74 -0.14 -2.38 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 21 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.07 0.45 7.17 -51.93 -0.37 0.08 16 28 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.38 1.86 9.12 45.56 0.42 2.28 16 33 H 0.14 2.18 6.20 -52.49 -0.33 1.86 16 34 H 0.41 3.08 7.85 -40.82 -0.32 2.76 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -35.71 360.54 -8.62 -44.33 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.05 Total: 1.04 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -3.27 Total: -18.29 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.69 Total: -34.25 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.41 Total: -15.14 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.71 -8.62 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589842976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.584 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds