Wall clock time and date at job start Tue Mar 31 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38134 * 120.03506 * 2 1 4 4 C 1.38265 * 120.06948 * 180.25153 * 3 2 1 5 5 C 1.38305 * 120.13982 * 359.49425 * 4 3 2 6 6 C 1.50702 * 119.96404 * 180.25276 * 5 4 3 7 7 O 1.42906 * 109.47250 * 89.99736 * 6 5 4 8 8 C 1.38088 * 120.07135 * 0.22461 * 5 4 3 9 9 C 1.38851 * 120.03666 * 179.72312 * 2 1 3 10 10 N 1.39924 * 120.06907 * 359.97438 * 9 2 1 11 11 C 1.34782 * 119.99828 * 145.31339 * 10 9 2 12 12 O 1.21287 * 120.00067 * 4.49555 * 11 10 9 13 13 C 1.50706 * 119.99601 * 184.49885 * 11 10 9 14 14 C 1.53004 * 109.46760 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47156 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47287 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47258 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00004 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99910 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00204 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46950 * 89.99930 * 21 19 17 23 23 H 1.48494 * 109.47331 * 210.00235 * 21 19 17 24 24 H 1.48505 * 109.47065 * 330.00265 * 21 19 17 25 25 H 1.08997 * 109.47351 * 270.27458 * 1 2 3 26 26 H 1.09000 * 109.47125 * 30.27807 * 1 2 3 27 27 H 1.09005 * 109.46884 * 150.27115 * 1 2 3 28 28 H 1.07999 * 119.96988 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.93327 * 179.76489 * 4 3 2 30 30 H 1.09003 * 109.47375 * 209.99526 * 6 5 4 31 31 H 1.08993 * 109.47221 * 330.00138 * 6 5 4 32 32 H 0.96694 * 114.00541 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.03966 * 179.97438 * 8 5 4 34 34 H 0.97001 * 119.99939 * 325.31170 * 10 9 2 35 35 H 1.08999 * 109.46882 * 299.99559 * 13 11 10 36 36 H 1.08994 * 109.47412 * 59.99762 * 13 11 10 37 37 H 1.08995 * 109.47044 * 300.00265 * 14 13 11 38 38 H 1.09002 * 109.47036 * 60.00052 * 14 13 11 39 39 H 1.09007 * 109.47194 * 300.00363 * 15 14 13 40 40 H 1.08999 * 109.47030 * 59.99388 * 15 14 13 41 41 H 1.08991 * 109.47254 * 300.00006 * 16 15 14 42 42 H 1.09002 * 109.46960 * 60.00142 * 16 15 14 43 43 H 0.97002 * 120.00249 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1967 -0.0053 5 6 4.2762 0.0011 0.0000 6 6 5.7832 0.0066 0.0000 7 8 6.2596 0.0144 1.3473 8 6 3.5909 -1.1978 0.0059 9 6 2.2020 -1.2020 0.0058 10 7 1.5046 -2.4151 0.0122 11 6 2.0006 -3.4810 -0.6469 12 8 3.0895 -3.4135 -1.1768 13 6 1.2021 -4.7567 -0.7254 14 6 1.9858 -5.8005 -1.5236 15 6 1.1755 -7.0958 -1.6029 16 6 1.9589 -8.1394 -2.4016 17 6 1.1609 -9.4156 -2.4791 18 1 0.1918 -9.4760 -2.0064 19 6 1.6677 -10.5055 -3.1545 20 7 2.8476 -10.4318 -3.7306 21 14 0.6784 -12.0871 -3.2512 22 1 -0.1881 -12.0560 -4.4568 23 1 1.6037 -13.2454 -3.3364 24 1 -0.1671 -12.2171 -2.0372 25 1 -0.3634 0.0049 1.0276 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3633 -0.8925 -0.5096 28 1 1.6584 2.1312 -0.0004 29 1 4.1193 2.1329 -0.0091 30 1 6.1499 -0.8843 -0.5098 31 1 6.1432 0.8956 -0.5177 32 1 7.2235 0.0179 1.4238 33 1 4.1343 -2.1311 0.0096 34 1 0.6642 -2.4889 0.4910 35 1 1.0171 -5.1321 0.2811 36 1 0.2511 -4.5602 -1.2203 37 1 2.1704 -5.4249 -2.5300 38 1 2.9370 -5.9972 -1.0290 39 1 0.9912 -7.4713 -0.5963 40 1 0.2240 -6.8995 -2.0971 41 1 2.1427 -7.7638 -3.4081 42 1 2.9105 -8.3358 -1.9076 43 1 3.2044 -11.1987 -4.2055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589842976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:57 Heat of formation + Delta-G solvation = -113.584348 kcal Electronic energy + Delta-G solvation = -22070.567594 eV Core-core repulsion = 18692.486247 eV Total energy + Delta-G solvation = -3378.081348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74751 -39.92077 -37.81103 -36.68876 -35.83190 -34.63796 -33.76800 -31.91425 -30.50476 -29.28105 -27.49870 -25.44585 -24.75464 -23.49280 -21.87977 -21.63651 -21.28857 -18.49250 -18.41664 -18.32334 -17.89841 -17.11764 -16.67219 -16.53805 -16.39763 -15.70255 -15.33225 -15.04593 -14.71940 -14.61894 -14.51996 -14.39359 -13.79631 -13.61270 -13.36232 -13.24860 -13.19366 -12.90715 -12.81713 -12.40511 -12.34562 -12.17867 -12.14979 -11.99083 -11.45390 -11.37333 -11.33047 -11.14460 -11.06179 -10.76412 -10.55497 -9.67555 -9.09066 -8.19208 -6.31419 0.19559 0.36917 1.40123 1.42407 1.53451 1.54655 2.02648 2.41652 2.66962 3.13636 3.50020 3.69637 3.87565 3.95102 4.00184 4.08452 4.12393 4.18216 4.33049 4.42791 4.56215 4.58720 4.66372 4.70511 4.79890 4.81055 4.83051 4.86597 4.97391 5.16928 5.22650 5.30675 5.33316 5.35482 5.41798 5.51998 5.56351 5.62342 5.77564 5.87725 6.05172 6.24722 6.39194 6.83504 6.87306 7.11214 7.38356 8.93127 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025101 B = 0.002451 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.220313 B =11421.015916 C =12315.519806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.108 4.108 3 C -0.107 4.107 4 C -0.116 4.116 5 C -0.104 4.104 6 C 0.118 3.882 7 O -0.587 6.587 8 C -0.126 4.126 9 C 0.122 3.878 10 N -0.660 5.660 11 C 0.510 3.490 12 O -0.564 6.564 13 C -0.125 4.125 14 C -0.097 4.097 15 C -0.095 4.095 16 C 0.018 3.982 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.007 4.007 20 N -0.939 5.939 21 Si 0.970 3.030 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.259 1.259 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.159 0.841 29 H 0.145 0.855 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.399 0.601 33 H 0.110 0.890 34 H 0.428 0.572 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.062 0.938 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 27.480 11.140 29.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.110 4.110 3 C -0.125 4.125 4 C -0.135 4.135 5 C -0.105 4.105 6 C 0.041 3.959 7 O -0.396 6.396 8 C -0.147 4.147 9 C 0.028 3.972 10 N -0.307 5.307 11 C 0.300 3.700 12 O -0.442 6.442 13 C -0.164 4.164 14 C -0.135 4.135 15 C -0.133 4.133 16 C -0.019 4.019 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.183 1.183 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.176 0.824 29 H 0.163 0.837 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.249 0.751 33 H 0.128 0.872 34 H 0.267 0.733 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.003 0.997 42 H 0.002 0.998 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.755 27.358 10.781 29.644 hybrid contribution 0.655 -1.275 -0.410 1.491 sum -3.100 26.083 10.371 28.240 Atomic orbital electron populations 1.20833 0.88391 1.04101 1.03747 1.20123 0.97944 0.91072 1.01863 1.21239 0.93811 0.98021 0.99449 1.21306 0.94848 0.97495 0.99827 1.19778 0.95595 0.93193 1.01885 1.20990 0.89836 1.01305 0.83801 1.86493 1.28747 1.97771 1.26599 1.21160 0.93697 0.98497 1.01323 1.17793 0.91001 0.86068 1.02349 1.43456 1.26349 1.08692 1.52207 1.21522 0.86372 0.85840 0.76300 1.90697 1.22902 1.83633 1.46976 1.21698 0.99883 0.90112 1.04693 1.21257 0.98320 0.94529 0.99384 1.21440 0.98341 0.93418 1.00069 1.19057 0.94814 0.94009 0.94003 1.21761 1.04355 0.98269 1.33531 0.91505 1.26099 0.96149 1.03133 0.95067 1.70132 1.19305 1.32051 1.36434 0.85382 0.78279 0.77877 0.79111 1.19679 1.20986 1.18275 0.89255 0.89520 0.91336 0.82364 0.83679 0.93551 0.90162 0.75077 0.87194 0.73257 0.85814 0.85664 0.93777 0.93835 0.91956 0.91883 0.99743 0.99776 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.47 71.23 0.67 -0.52 16 2 C -0.11 -1.92 5.90 -19.74 -0.12 -2.04 16 3 C -0.11 -1.71 9.70 22.25 0.22 -1.49 16 4 C -0.12 -2.15 9.70 22.29 0.22 -1.94 16 5 C -0.10 -2.49 5.51 -19.88 -0.11 -2.60 16 6 C 0.12 2.35 7.17 71.24 0.51 2.87 16 7 O -0.59 -11.78 13.64 -148.98 -2.03 -13.81 16 8 C -0.13 -3.62 8.35 22.39 0.19 -3.43 16 9 C 0.12 2.93 6.29 38.15 0.24 3.17 16 10 N -0.66 -13.79 4.75 -303.49 -1.44 -15.23 16 11 C 0.51 14.11 7.68 87.66 0.67 14.78 16 12 O -0.56 -21.19 13.40 -3.05 -0.04 -21.24 16 13 C -0.12 -2.98 5.70 29.85 0.17 -2.81 16 14 C -0.10 -3.45 4.50 30.59 0.14 -3.32 16 15 C -0.10 -3.85 5.15 30.59 0.16 -3.69 16 16 C 0.02 1.01 4.97 29.85 0.15 1.15 16 17 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 19 C -0.01 -0.44 5.46 84.65 0.46 0.03 16 20 N -0.94 -59.36 13.29 21.45 0.28 -59.07 16 21 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 25 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.09 0.67 8.09 -2.39 -0.02 0.65 16 27 H 0.07 0.70 7.17 -2.38 -0.02 0.69 16 28 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 29 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 30 H 0.05 0.99 8.08 -2.39 -0.02 0.97 16 31 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 32 H 0.40 3.89 9.12 -74.06 -0.68 3.22 16 33 H 0.11 3.78 6.20 -2.91 -0.02 3.76 16 34 H 0.43 5.44 7.85 -92.71 -0.73 4.71 16 35 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 38 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 39 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 41 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 42 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 43 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -81.77 360.54 2.21 -79.56 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -0.39 Total: 13.91 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 3.80 Total: -31.01 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -1.16 Total: -74.30 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -2.07 Total: -35.05 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -81.77 2.21 -79.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589842976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.024 kcal (2) G-P(sol) polarization free energy of solvation -81.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds